mRNA_H-elongata_contig82675.15912.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: D7FSE5_ECTSI (Casein kinase II subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.160e-54 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 1
Query: 1 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGI DEPKKEAVKLYCPRC DVYNTVSPYGGE
Sbjct: 39 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGE 128
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6H5KX78_9PHAE (Casein kinase II subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX78_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.080e-53 Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 1
Query: 1 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGI DEPKKEAVKLYCPRC DVYNTVSPYGGE
Sbjct: 73 ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGIFDEPKKEAVKLYCPRCCDVYNTVSPYGGE 162
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6V1P2G8_HETAK (Casein kinase II subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2G8_HETAK) HSP 1 Score: 121 bits (303), Expect = 3.420e-31 Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
D+ DP++AQ+A++LYG+IHARFI T+RGLE MYKKYR +FGRCPR +CK+Q VVP GI D P KE VK+YCP+C VY + G +
Sbjct: 65 DDNLDPMMAQAAYLLYGLIHARFITTSRGLEVMYKKYRTGDFGRCPRMLCKDQFVVPAGIYDHPNKEKVKVYCPKCGQVYGVPTNPGEQ 153
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: U9SHE8_RHIID (Casein kinase II subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=U9SHE8_RHIID) HSP 1 Score: 114 bits (284), Expect = 1.460e-29 Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
D+ V +SA LYG+IHARFI+T+RGL M +KY+ A+FGRCPR +C NQP++PVG+SD+P ++VKLYCPRC D+YN S
Sbjct: 69 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLEKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 152
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A2Z6RID5_9GLOM (Casein kinase II subunit beta n=3 Tax=Glomeromycetes TaxID=214506 RepID=A0A2Z6RID5_9GLOM) HSP 1 Score: 114 bits (284), Expect = 4.150e-29 Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
D+ V +SA LYG+IHARFI+T+RGL M +KY+ A+FGRCPR +C NQP++PVG+SD+P ++VKLYCPRC D+YN S
Sbjct: 115 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLEKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 198
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A397G234_9GLOM (Casein kinase II subunit beta n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G234_9GLOM) HSP 1 Score: 113 bits (282), Expect = 8.240e-29 Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
D+ V +SA LYG+IHARFI+T+RGL M KY+ A+FGRCPR +C NQP++PVG+SD+P ++VKLYCPRC D+YN S
Sbjct: 115 DDEMREAVEKSARHLYGLIHARFIITSRGLAKMLDKYKKADFGRCPRVLCHNQPLLPVGLSDQPYTKSVKLYCPRCEDIYNPKS 198
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A6U2PBT7_9STRA (Casein kinase II subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2PBT7_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.960e-28 Identity = 45/80 (56.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVY 243
+E Q +V +A MLYG+IHAR+IVT+RG+ AMY+KYR+A FGRCPR C+ QPV+PVG+SD P+ V ++CPRC +++
Sbjct: 8 NEEQQEIVESAAEMLYGLIHARYIVTSRGMHAMYEKYRIASFGRCPRVFCQGQPVLPVGMSDLPRNYTVNVFCPRCHELF 87
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A0K9NYU0_ZOSMR (Casein kinase II subunit beta n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NYU0_ZOSMR) HSP 1 Score: 110 bits (274), Expect = 2.710e-28 Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNT 249
+E D ++ SA MLYG+IHAR+I+T RGL+AM +K+ A+FG CPR +CKNQ +PVGISD+P KE +K+YCP C+DVY+T
Sbjct: 92 EEVDDNILKHSAEMLYGLIHARYILTPRGLKAMSEKFENADFGFCPRVLCKNQYCLPVGISDKPHKEFIKIYCPNCQDVYDT 173
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A507ECY4_9FUNG (Casein kinase II subunit beta n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507ECY4_9FUNG) HSP 1 Score: 110 bits (276), Expect = 2.800e-28 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 25 VAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVS 255
V +SA LYGMIHARF++TARGL M K+R AEFGRCPR +C+NQPV+P G++D P + VKLYCPRC DVY+ V+
Sbjct: 79 VEKSARQLYGMIHARFVITARGLAKMLDKFRHAEFGRCPRVLCENQPVLPCGLADTPGIKCVKLYCPRCEDVYSPVA 155
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Match: A0A1Y2BJB6_9TREE (Casein kinase II subunit beta n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2BJB6_9TREE) HSP 1 Score: 111 bits (277), Expect = 3.550e-28 Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 4 DEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMCKNQPVVPVGISDEPKKEAVKLYCPRCRDVYNTVSPYGGE 270
D+ VV SA LYG+IHAR+IVT+RGL+ M +KYR A+FGRCPR C +QP++PVG+SD P ++AVKLYCPRC D+Y+ S G
Sbjct: 71 DDDLREVVETSARFLYGLIHARYIVTSRGLQKMLEKYRKADFGRCPRVYCYSQPLLPVGLSDIPYQKAVKLYCPRCEDIYSPKSNRHGS 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82675.15912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82675.15912.1 >prot_H-elongata_contig82675.15912.1 ID=prot_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp ADEPQDPVVAQSAFMLYGMIHARFIVTARGLEAMYKKYRLAEFGRCPRTMback to top mRNA from alignment at H-elongata_contig82675:1140..2549+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82675.15912.1 ID=mRNA_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1410bp|location=Sequence derived from alignment at H-elongata_contig82675:1140..2549+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82675:1140..2549+ >mRNA_H-elongata_contig82675.15912.1 ID=mRNA_H-elongata_contig82675.15912.1|Name=mRNA_H-elongata_contig82675.15912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig82675:1140..2549+ (Himanthalia elongata Himel1 dioecious)back to top |