mRNA_H-elongata_contig82428.15898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82428.15898.1
Unique NamemRNA_H-elongata_contig82428.15898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.970e-21
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   25 GGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            GGGVLSLPFALRRSG+V GA+LL+LTA A DF+VFTLVSCSRRSG S+YE+VA  AFGR   L+ + LV
Sbjct:   35 GGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLVSCSRRSGGSSYESVADVAFGRRAKLLCMALV 103          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.240e-16
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFG 198
            N ++   GGGVLSLPFAL+R+GL+ G  LLVLTALA+DFSV+ LVSCSRRSGA ++E VA  AFG
Sbjct:   31 NLISTVLGGGVLSLPFALQRAGLIPGLALLVLTALASDFSVYILVSCSRRSGAQSFEEVAEKAFG 95          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A024U9R4_9STRA (Aa_trans domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9R4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.660e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGL 228
            N +T   GGGVL LPF + +SG+V+G +L++  A+A+ F+ + LVSCSRRSGA +YE +A  AFGR   ++T+ L
Sbjct:   57 NLVTTLIGGGVLLLPFTIAKSGIVVGCVLMLCCAMASSFTSYILVSCSRRSGAQSYEEIARNAFGRKMQIVTMVL 131          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A485KWV7_9STRA (Aste57867_12930 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWV7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.620e-13
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            N +T   GGGVL LPF + +SG+V+G  L++  A+A+ F+++ LVSCSRRSGA +YE +A  AFG+   L T+ L+
Sbjct:   56 NLVTTLIGGGVLLLPFTIAKSGIVVGCFLMLCCAMASSFTLYILVSCSRRSGAQSYEEIAKNAFGKKMQLFTMVLL 131          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: K3WGF0_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGF0_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 2.240e-13
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            +N  +   GGGVLSLP+A  + GLV+  + +VL+A A++FS++ +VSCSRR GA+TYE +   A G   GLIT+ L+
Sbjct:   78 FNLASTIVGGGVLSLPYAFDKCGLVLTVVFMVLSAAASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLITVTLL 154          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A6A5ANP3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ANP3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.180e-13
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGL 228
            N +T   GGGVL LPF + +SG+V+G ++++  A A+ F+ + LVSCSRRSGA +YE +A  AFGR   ++T+ L
Sbjct:   55 NLVTTLIGGGVLLLPFTIAKSGIVVGCIIMLCCATASSFTSYILVSCSRRSGAQSYEEIARNAFGRKMQVVTMVL 129          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A5D6XH06_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH06_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.180e-13
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            +N  +   GGG+LSLP+A  + GLV+  + +V++A+A++FS++ +VSCSRR GA+TYE +   A G   GL+T+ L+
Sbjct:   83 FNLASTIIGGGILSLPYAFEKCGLVLAFVFMVVSAMASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLVTVTLL 159          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A2D4CAQ0_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAQ0_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 4.150e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            +N ++   GGGVLSLP+A  + GLV+  +L+V+++ A+ FS++ +VSCSRR G +TYE V   A G   GL+T+ L+
Sbjct:   68 FNXVSTIIGGGVLSLPYAFDKCGLVLAVVLMVISSAASTFSLYIIVSCSRRGGVTTYEEVVRKALGVRAGLVTVSLL 144          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: K3WGD4_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGD4_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 5.720e-13
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
            +N ++   GGG+LSLP+A  + G+V+  + ++++A A++FS++ +VSCSRR GA+TYE V   A G   GLIT+ L+
Sbjct:   97 FNLVSTIIGGGILSLPYAFDKCGIVLAVVFMIVSAAASNFSLYVIVSCSRRGGATTYEEVVRKALGPKAGLITVTLL 173          
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A1W0A103_9STRA (Sodium-coupled neutral amino acid transporter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A103_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-12
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGR 201
            N +T   GGGVL LP+ + RSG+V+G  +++L A+ + F+++ LVSCSRRSGA +YE +A  AFG+
Sbjct:   45 NLVTTLIGGGVLLLPYTIARSGIVLGCFMMLLCAMGSSFTLYILVSCSRRSGAQSYEEIAKNAFGK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW38_ECTSI9.970e-2172.46Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA1.240e-1667.69Transmembrane amino acid transporter protein-domai... [more]
A0A024U9R4_9STRA8.660e-1449.33Aa_trans domain-containing protein n=6 Tax=Aphanom... [more]
A0A485KWV7_9STRA1.620e-1348.68Aste57867_12930 protein n=1 Tax=Aphanomyces stella... [more]
K3WGF0_GLOUD2.240e-1348.05Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A6A5ANP3_9STRA3.180e-1348.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A5D6XH06_9STRA3.180e-1344.16Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CAQ0_PYTIN4.150e-1345.45Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
K3WGD4_GLOUD5.720e-1344.16Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A1W0A103_9STRA1.050e-1250.00Sodium-coupled neutral amino acid transporter n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82428contigH-elongata_contig82428:256..486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.4e-17
Seed eggNOG ortholog2880.D7FW38
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size231
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.8221176-CDS-H-elongata_contig82428:255..4771622931230.8221176-CDS-H-elongata_contig82428:255..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82428 256..477 -
1691679751.7547288-CDS-H-elongata_contig82428:255..4771691679751.7547288-CDS-H-elongata_contig82428:255..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82428 256..477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.8824482-UTR-H-elongata_contig82428:477..4861622931230.8824482-UTR-H-elongata_contig82428:477..486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82428 478..486 -
1691679751.7668495-UTR-H-elongata_contig82428:477..4861691679751.7668495-UTR-H-elongata_contig82428:477..486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82428 478..486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82428.15898.1prot_H-elongata_contig82428.15898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82428 256..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82428.15898.1

>prot_H-elongata_contig82428.15898.1 ID=prot_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSG
ASTYETVAHTAFGRLGGLITLGLV
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mRNA from alignment at H-elongata_contig82428:256..486-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82428.15898.1 ID=mRNA_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig82428:256..486- (Himanthalia elongata Himel1 dioecious)
TACAACCCCATGACTGTATTTGCAGGAGGGGGTGTCCTATCGCTGCCCTT CGCCCTGCGCAGAAGCGGATTAGTCATCGGAGCTCTGCTGCTGGTGCTAA CAGCCTTGGCCGCGGACTTCAGCGTGTTTACGCTTGTCAGCTGCTCCAGG CGGTCGGGTGCATCGACGTACGAAACGGTCGCCCACACCGCTTTCGGTCG ATTGGGCGGGTTGATTACCTTGGGGCTGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig82428:256..486-

>mRNA_H-elongata_contig82428.15898.1 ID=mRNA_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig82428:256..486- (Himanthalia elongata Himel1 dioecious)
ATGACTGTATTTGCAGGAGGGGGTGTCCTATCGCTGCCCTTCGCCCTGCG
CAGAAGCGGATTAGTCATCGGAGCTCTGCTGCTGGTGCTAACAGCCTTGG
CCGCGGACTTCAGCGTGTTTACGCTTGTCAGCTGCTCCAGGCGGTCGGGT
GCATCGACGTACGAAACGGTCGCCCACACCGCTTTCGGTCGATTGGGCGG
GTTGATTACCTTGGGGCTGGTAATGACTGTATTTGCAGGAGGGGGTGTCC
TATCGCTGCCCTTCGCCCTGCGCAGAAGCGGATTAGTCATCGGAGCTCTG
CTGCTGGTGCTAACAGCCTTGGCCGCGGACTTCAGCGTGTTTACGCTTGT
CAGCTGCTCCAGGCGGTCGGGTGCATCGACGTACGAAACGGTCGCCCACA
CCGCTTTCGGTCGATTGGGCGGGTTGATTACCTTGGGGCTGGTA
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