mRNA_H-elongata_contig82428.15898.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 9.970e-21 Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 25 GGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
GGGVLSLPFALRRSG+V GA+LL+LTA A DF+VFTLVSCSRRSG S+YE+VA AFGR L+ + LV
Sbjct: 35 GGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLVSCSRRSGGSSYESVADVAFGRRAKLLCMALV 103
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.240e-16 Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFG 198
N ++ GGGVLSLPFAL+R+GL+ G LLVLTALA+DFSV+ LVSCSRRSGA ++E VA AFG
Sbjct: 31 NLISTVLGGGVLSLPFALQRAGLIPGLALLVLTALASDFSVYILVSCSRRSGAQSFEEVAEKAFG 95
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A024U9R4_9STRA (Aa_trans domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9R4_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 8.660e-14 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGL 228
N +T GGGVL LPF + +SG+V+G +L++ A+A+ F+ + LVSCSRRSGA +YE +A AFGR ++T+ L
Sbjct: 57 NLVTTLIGGGVLLLPFTIAKSGIVVGCVLMLCCAMASSFTSYILVSCSRRSGAQSYEEIARNAFGRKMQIVTMVL 131
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A485KWV7_9STRA (Aste57867_12930 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWV7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.620e-13 Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
N +T GGGVL LPF + +SG+V+G L++ A+A+ F+++ LVSCSRRSGA +YE +A AFG+ L T+ L+
Sbjct: 56 NLVTTLIGGGVLLLPFTIAKSGIVVGCFLMLCCAMASSFTLYILVSCSRRSGAQSYEEIAKNAFGKKMQLFTMVLL 131
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: K3WGF0_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGF0_GLOUD) HSP 1 Score: 73.2 bits (178), Expect = 2.240e-13 Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
+N + GGGVLSLP+A + GLV+ + +VL+A A++FS++ +VSCSRR GA+TYE + A G GLIT+ L+
Sbjct: 78 FNLASTIVGGGVLSLPYAFDKCGLVLTVVFMVLSAAASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLITVTLL 154
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A6A5ANP3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ANP3_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.180e-13 Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGL 228
N +T GGGVL LPF + +SG+V+G ++++ A A+ F+ + LVSCSRRSGA +YE +A AFGR ++T+ L
Sbjct: 55 NLVTTLIGGGVLLLPFTIAKSGIVVGCIIMLCCATASSFTSYILVSCSRRSGAQSYEEIARNAFGRKMQVVTMVL 129
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A5D6XH06_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH06_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.180e-13 Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
+N + GGG+LSLP+A + GLV+ + +V++A+A++FS++ +VSCSRR GA+TYE + A G GL+T+ L+
Sbjct: 83 FNLASTIIGGGILSLPYAFEKCGLVLAFVFMVVSAMASNFSLYVIVSCSRRGGATTYEEIVRKALGPKAGLVTVTLL 159
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A2D4CAQ0_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAQ0_PYTIN) HSP 1 Score: 72.4 bits (176), Expect = 4.150e-13 Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
+N ++ GGGVLSLP+A + GLV+ +L+V+++ A+ FS++ +VSCSRR G +TYE V A G GL+T+ L+
Sbjct: 68 FNXVSTIIGGGVLSLPYAFDKCGLVLAVVLMVISSAASTFSLYIIVSCSRRGGVTTYEEVVRKALGVRAGLVTVSLL 144
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: K3WGD4_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGD4_GLOUD) HSP 1 Score: 72.0 bits (175), Expect = 5.720e-13 Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 1 YNPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGRLGGLITLGLV 231
+N ++ GGG+LSLP+A + G+V+ + ++++A A++FS++ +VSCSRR GA+TYE V A G GLIT+ L+
Sbjct: 97 FNLVSTIIGGGILSLPYAFDKCGIVLAVVFMIVSAAASNFSLYVIVSCSRRGGATTYEEVVRKALGPKAGLITVTLL 173
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Match: A0A1W0A103_9STRA (Sodium-coupled neutral amino acid transporter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A103_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.050e-12 Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 4 NPMTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGASTYETVAHTAFGR 201
N +T GGGVL LP+ + RSG+V+G +++L A+ + F+++ LVSCSRRSGA +YE +A AFG+
Sbjct: 45 NLVTTLIGGGVLLLPYTIARSGIVLGCFMMLLCAMGSSFTLYILVSCSRRSGAQSYEEIAKNAFGK 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82428.15898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82428.15898.1 >prot_H-elongata_contig82428.15898.1 ID=prot_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MTVFAGGGVLSLPFALRRSGLVIGALLLVLTALAADFSVFTLVSCSRRSGback to top mRNA from alignment at H-elongata_contig82428:256..486- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82428.15898.1 ID=mRNA_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig82428:256..486- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82428:256..486- >mRNA_H-elongata_contig82428.15898.1 ID=mRNA_H-elongata_contig82428.15898.1|Name=mRNA_H-elongata_contig82428.15898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig82428:256..486- (Himanthalia elongata Himel1 dioecious)back to top |