prot_H-elongata_contig82334.15889.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82334.15889.1
Unique Nameprot_H-elongata_contig82334.15889.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig82334.15889.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:    2 RQFWEAKFVKGDGNCMWRSVVKAMWDCDRFWSHMKLVVLGWAAAN 46
            ++ W A +V+GDGNC WRS+ K +W+ D +WS +KLVVL WAAA+
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAH 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82334.15889.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.680e-1155.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82334contigH-elongata_contig82334:694..831 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82334.15889.1mRNA_H-elongata_contig82334.15889.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82334 694..831 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82334.15889.1 ID=prot_H-elongata_contig82334.15889.1|Name=mRNA_H-elongata_contig82334.15889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
LRQFWEAKFVKGDGNCMWRSVVKAMWDCDRFWSHMKLVVLGWAAAN
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