mRNA_H-elongata_contig82334.15889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82334.15889.1
Unique NamemRNA_H-elongata_contig82334.15889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82334.15889.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 RQFWEAKFVKGDGNCMWRSVVKAMWDCDRFWSHMKLVVLGWAAAN 138
            ++ W A +V+GDGNC WRS+ K +W+ D +WS +KLVVL WAAA+
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAH 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82334.15889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.680e-1155.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82334contigH-elongata_contig82334:694..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.9887288-CDS-H-elongata_contig82334:693..8311622931229.9887288-CDS-H-elongata_contig82334:693..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82334 694..831 -
1691679751.3207424-CDS-H-elongata_contig82334:693..8311691679751.3207424-CDS-H-elongata_contig82334:693..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82334 694..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82334.15889.1prot_H-elongata_contig82334.15889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82334 694..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82334.15889.1

>prot_H-elongata_contig82334.15889.1 ID=prot_H-elongata_contig82334.15889.1|Name=mRNA_H-elongata_contig82334.15889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
LRQFWEAKFVKGDGNCMWRSVVKAMWDCDRFWSHMKLVVLGWAAAN
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mRNA from alignment at H-elongata_contig82334:694..831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82334.15889.1 ID=mRNA_H-elongata_contig82334.15889.1|Name=mRNA_H-elongata_contig82334.15889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig82334:694..831- (Himanthalia elongata Himel1 dioecious)
CTTCGCCAGTTTTGGGAGGCCAAGTTTGTGAAAGGCGACGGAAACTGTAT
GTGGCGTTCAGTCGTCAAGGCCATGTGGGATTGCGACCGGTTCTGGTCCC
ATATGAAGCTTGTGGTTCTAGGGTGGGCCGCCGCGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig82334:694..831-

>mRNA_H-elongata_contig82334.15889.1 ID=mRNA_H-elongata_contig82334.15889.1|Name=mRNA_H-elongata_contig82334.15889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig82334:694..831- (Himanthalia elongata Himel1 dioecious)
CTTCGCCAGTTTTGGGAGGCCAAGTTTGTGAAAGGCGACGGAAACTGTAT
GTGGCGTTCAGTCGTCAAGGCCATGTGGGATTGCGACCGGTTCTGGTCCC
ATATGAAGCTTGTGGTTCTAGGGTGGGCCGCCGCGAACCTTCGCCAGTTT
TGGGAGGCCAAGTTTGTGAAAGGCGACGGAAACTGTATGTGGCGTTCAGT
CGTCAAGGCCATGTGGGATTGCGACCGGTTCTGGTCCCATATGAAGCTTG
TGGTTCTAGGGTGGGCCGCCGCGAAC
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