prot_H-elongata_contig81958.15861.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig81958.15861.1
Unique Nameprot_H-elongata_contig81958.15861.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.010e-24
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GKIFLGGLTWQT+++MLKTHFGKWG+L+DVILMRNKITGEPRGFGFVQF
Sbjct:   61 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQF 109          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.590e-16
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GKIF+GG++WQTSDE L  +F K+G+L+DV LM++K TG+PRGFGF++F
Sbjct:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKF 71          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A2V0P186_9CHLO (Heterogeneous nuclear ribonucleoprotein-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P186_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 6.160e-16
Identity = 31/49 (63.27%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GKIFLGGL+W+T+++ LK HFGK+G++ +VI+MR++ITG+PRGFGF+ F
Sbjct:   19 GKIFLGGLSWETNEDKLKEHFGKYGTIQEVIVMRDRITGKPRGFGFITF 67          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: K3X8G5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8G5_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 8.200e-16
Identity = 28/49 (57.14%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++W+T+++ L+ HFGK+G+L+D  LM++K TG+PRGFGFV F
Sbjct:   68 GKLFIGGISWETTEDGLRAHFGKYGTLTDAALMKDKYTGQPRGFGFVTF 116          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A5K0YSM3_9MAGN (RRM domain-containing protein (Fragment) n=3 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0YSM3_9MAGN)

HSP 1 Score: 72.0 bits (175), Expect = 1.650e-15
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++W+T++E LK HF K+G ++  ++MR+K+TG PRGFGFV F
Sbjct:    6 GKLFIGGVSWETTEEKLKDHFEKYGEVTQAVIMRDKVTGRPRGFGFVVF 54          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: H3G7Q1_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Q1_PHYRM)

HSP 1 Score: 73.9 bits (180), Expect = 1.660e-15
Identity = 28/49 (57.14%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++W+T+++ L+ HFGK+G L+D  LM++K TG+PRGFGFV F
Sbjct:    6 GKLFIGGVSWETTEDTLRQHFGKYGELTDAALMKDKYTGQPRGFGFVTF 54          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A2V0NLB4_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLB4_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 2.710e-15
Identity = 30/49 (61.22%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GKIFLGGL+W+T++E LK HF K+G + +VI+MR+++TG+PRGFGF+ F
Sbjct:   37 GKIFLGGLSWETNEEKLKEHFSKYGEIQEVIVMRDRVTGKPRGFGFITF 85          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.140e-15
Identity = 29/49 (59.18%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++WQT++E L+ HFGK+G+L+D+ LM++K TG PRGFGF++F
Sbjct:  148 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKF 196          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A3S3NEA5_9MAGN (Heterogeneous nuclear ribonucleoprotein 1-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NEA5_9MAGN)

HSP 1 Score: 76.3 bits (186), Expect = 5.550e-15
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++W+T+DE LK HFGK+G +S  ++MR+K TG PRGFGFV F
Sbjct:    6 GKLFIGGISWETTDEKLKEHFGKYGEVSQTVIMRDKSTGRPRGFGFVGF 54          
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A699RWZ5_TANCI (Heterogeneous nuclear ribonucleoprotein 1-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RWZ5_TANCI)

HSP 1 Score: 70.5 bits (171), Expect = 6.700e-15
Identity = 26/49 (53.06%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 49
            GK+F+GG++W T++E+L  +F K+G++S  ++MR+K+TG PRGFGFV F
Sbjct:    6 GKVFIGGISWDTTEEILTDYFSKYGNVSQTVIMRDKVTGRPRGFGFVVF 54          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI8.010e-2489.80RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A836CMD2_9STRA5.590e-1663.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V0P186_9CHLO6.160e-1663.27Heterogeneous nuclear ribonucleoprotein-like n=1 T... [more]
K3X8G5_GLOUD8.200e-1657.14RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A5K0YSM3_9MAGN1.650e-1555.10RRM domain-containing protein (Fragment) n=3 Tax=N... [more]
H3G7Q1_PHYRM1.660e-1557.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2V0NLB4_9CHLO2.710e-1561.22Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
D7FW71_ECTSI4.140e-1559.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3S3NEA5_9MAGN5.550e-1561.22Heterogeneous nuclear ribonucleoprotein 1-like pro... [more]
A0A699RWZ5_TANCI6.700e-1553.06Heterogeneous nuclear ribonucleoprotein 1-like (Fr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 3..49
e-value: 9.9E-12
score: 44.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..49
score: 13.311
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..49
e-value: 1.6E-16
score: 62.5
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 2..49
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 2..49
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81958contigH-elongata_contig81958:1..147 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81958.15861.1mRNA_H-elongata_contig81958.15861.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig81958 1..147 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig81958.15861.1 ID=prot_H-elongata_contig81958.15861.1|Name=mRNA_H-elongata_contig81958.15861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf