mRNA_H-elongata_contig81958.15861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81958.15861.1
Unique NamemRNA_H-elongata_contig81958.15861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.010e-24
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GKIFLGGLTWQT+++MLKTHFGKWG+L+DVILMRNKITGEPRGFGFVQF
Sbjct:   61 GKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQF 109
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.590e-16
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GKIF+GG++WQTSDE L  +F K+G+L+DV LM++K TG+PRGFGF++F
Sbjct:   23 GKIFVGGISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKF 71
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A2V0P186_9CHLO (Heterogeneous nuclear ribonucleoprotein-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P186_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 6.160e-16
Identity = 31/49 (63.27%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GKIFLGGL+W+T+++ LK HFGK+G++ +VI+MR++ITG+PRGFGF+ F
Sbjct:   19 GKIFLGGLSWETNEDKLKEHFGKYGTIQEVIVMRDRITGKPRGFGFITF 67
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: K3X8G5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8G5_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 8.200e-16
Identity = 28/49 (57.14%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++W+T+++ L+ HFGK+G+L+D  LM++K TG+PRGFGFV F
Sbjct:   68 GKLFIGGISWETTEDGLRAHFGKYGTLTDAALMKDKYTGQPRGFGFVTF 116
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A5K0YSM3_9MAGN (RRM domain-containing protein (Fragment) n=3 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0YSM3_9MAGN)

HSP 1 Score: 72.0 bits (175), Expect = 1.650e-15
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++W+T++E LK HF K+G ++  ++MR+K+TG PRGFGFV F
Sbjct:    6 GKLFIGGVSWETTEEKLKDHFEKYGEVTQAVIMRDKVTGRPRGFGFVVF 54
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: H3G7Q1_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Q1_PHYRM)

HSP 1 Score: 73.9 bits (180), Expect = 1.660e-15
Identity = 28/49 (57.14%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++W+T+++ L+ HFGK+G L+D  LM++K TG+PRGFGFV F
Sbjct:    6 GKLFIGGVSWETTEDTLRQHFGKYGELTDAALMKDKYTGQPRGFGFVTF 54
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A2V0NLB4_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLB4_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 2.710e-15
Identity = 30/49 (61.22%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GKIFLGGL+W+T++E LK HF K+G + +VI+MR+++TG+PRGFGF+ F
Sbjct:   37 GKIFLGGLSWETNEEKLKEHFSKYGEIQEVIVMRDRVTGKPRGFGFITF 85
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.140e-15
Identity = 29/49 (59.18%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++WQT++E L+ HFGK+G+L+D+ LM++K TG PRGFGF++F
Sbjct:  148 GKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKF 196
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A3S3NEA5_9MAGN (Heterogeneous nuclear ribonucleoprotein 1-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NEA5_9MAGN)

HSP 1 Score: 76.3 bits (186), Expect = 5.550e-15
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++W+T+DE LK HFGK+G +S  ++MR+K TG PRGFGFV F
Sbjct:    6 GKLFIGGISWETTDEKLKEHFGKYGEVSQTVIMRDKSTGRPRGFGFVGF 54
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BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Match: A0A699RWZ5_TANCI (Heterogeneous nuclear ribonucleoprotein 1-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RWZ5_TANCI)

HSP 1 Score: 70.5 bits (171), Expect = 6.700e-15
Identity = 26/49 (53.06%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF 147
            GK+F+GG++W T++E+L  +F K+G++S  ++MR+K+TG PRGFGFV F
Sbjct:    6 GKVFIGGISWDTTEEILTDYFSKYGNVSQTVIMRDKVTGRPRGFGFVVF 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81958.15861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT7_ECTSI8.010e-2489.80RNA-binding protein, putative n=2 Tax=Ectocarpus T... [more]
A0A836CMD2_9STRA5.590e-1663.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V0P186_9CHLO6.160e-1663.27Heterogeneous nuclear ribonucleoprotein-like n=1 T... [more]
K3X8G5_GLOUD8.200e-1657.14RRM domain-containing protein n=1 Tax=Globisporang... [more]
A0A5K0YSM3_9MAGN1.650e-1555.10RRM domain-containing protein (Fragment) n=3 Tax=N... [more]
H3G7Q1_PHYRM1.660e-1557.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2V0NLB4_9CHLO2.710e-1561.22Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
D7FW71_ECTSI4.140e-1559.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3S3NEA5_9MAGN5.550e-1561.22Heterogeneous nuclear ribonucleoprotein 1-like pro... [more]
A0A699RWZ5_TANCI6.700e-1553.06Heterogeneous nuclear ribonucleoprotein 1-like (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81958contigH-elongata_contig81958:1..147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue4.6e-20
Seed eggNOG ortholog2880.D7FQT7
Preferred nameHNRNPA1
KEGG rclassRC00302
KEGG koko:K12235,ko:K12741,ko:K14411
KEGG ReactionR00589
KEGG Pathwayko00260,ko01100,ko03015,ko03040,map00260,map01100,map03015,map03040
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009791,GO:0009987,GO:0010228,GO:0010467,GO:0016070,GO:0016071,GO:0022414,GO:0030154,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034046,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0047484,GO:0048468,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050789,GO:0061458,GO:0065007,GO:0070013,GO:0070717,GO:0071704,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901000,GO:1901360,GO:1901363,GO:1990904,GO:2000070
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
EC5.1.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.264972-CDS-H-elongata_contig81958:0..1471622931227.264972-CDS-H-elongata_contig81958:0..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81958 1..147 -
1691679750.244597-CDS-H-elongata_contig81958:0..1471691679750.244597-CDS-H-elongata_contig81958:0..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81958 1..147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81958.15861.1prot_H-elongata_contig81958.15861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81958 1..147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81958.15861.1

>prot_H-elongata_contig81958.15861.1 ID=prot_H-elongata_contig81958.15861.1|Name=mRNA_H-elongata_contig81958.15861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GKIFLGGLTWQTSDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQF
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mRNA from alignment at H-elongata_contig81958:1..147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81958.15861.1 ID=mRNA_H-elongata_contig81958.15861.1|Name=mRNA_H-elongata_contig81958.15861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig81958:1..147- (Himanthalia elongata Himel1 dioecious)
GGCAAGATCTTCCTCGGGGGTCTCACTTGGCAGACGTCAGATGAGATGCT
CAAGACGCATTTCGGGAAGTGGGGCAGCCTGAGCGATGTCATACTCATGC
GCAACAAAATTACCGGAGAGCCCCGAGGATTCGGCTTCGTTCAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig81958:1..147-

>mRNA_H-elongata_contig81958.15861.1 ID=mRNA_H-elongata_contig81958.15861.1|Name=mRNA_H-elongata_contig81958.15861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig81958:1..147- (Himanthalia elongata Himel1 dioecious)
GGCAAGATCTTCCTCGGGGGTCTCACTTGGCAGACGTCAGATGAGATGCT
CAAGACGCATTTCGGGAAGTGGGGCAGCCTGAGCGATGTCATACTCATGC
GCAACAAAATTACCGGAGAGCCCCGAGGATTCGGCTTCGTTCAGTTCGGC
AAGATCTTCCTCGGGGGTCTCACTTGGCAGACGTCAGATGAGATGCTCAA
GACGCATTTCGGGAAGTGGGGCAGCCTGAGCGATGTCATACTCATGCGCA
ACAAAATTACCGGAGAGCCCCGAGGATTCGGCTTCGTTCAGTTC
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