mRNA_H-elongata_contig81839.15851.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 239 bits (609), Expect = 2.580e-74 Identity = 113/163 (69.33%), Postives = 127/163 (77.91%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLND-PDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GE A NGNY+E D ++ RHG+CGDPEQTA E SN+YG NS YPVLETY EG I+EVKIVVST H GH+E FLCD DDL D PD VTQ CFN HPLDRAEDD PIDP GR+ LDP CR++ETDQ ++ GAFPGDV TAR+QLP GVTC RC+VQMAY
Sbjct: 51 GERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAY 213
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 234 bits (598), Expect = 2.390e-72 Identity = 112/163 (68.71%), Postives = 126/163 (77.30%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLND-PDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GE A NGNY+E D ++ RHG+CGDPEQTA E SN+YG NS YPVLETY EG I+EVKIVVST H GH+E FLCD DDL D PD VTQ CFN +PLDRAEDD PIDP GR+ LDP CR++ETDQ +L GAF GDV TAR+QLP GVTC RC+VQMAY
Sbjct: 80 GERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAY 242
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 232 bits (591), Expect = 2.230e-69 Identity = 108/163 (66.26%), Postives = 126/163 (77.30%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDL-NDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GE A NGNY+E + ++ RHGICGDPEQTA E SN+YG NS YPVLETY EG I+E K+VVST H GH+E FLCD DDL PD VTQ CFN HPLDR +DD SPIDP+ GR+ LDP CR++ETDQ +LDGAFPGDV TAR++LP G+TC RC+VQM Y
Sbjct: 82 GERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVY 244
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 221 bits (564), Expect = 4.550e-69 Identity = 103/163 (63.19%), Postives = 124/163 (76.07%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDL-NDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GE A NGNY+E + ++ RHGICGDPEQTA ESSN+YG NS YPV ETY EG I+EVKIVVST H GH+E FLC+ +L PD VTQ CFN HPLDRA+DD P DP+ GR+ LDP CR++ETDQ +LDGA+P DV TAR++LP G++C RC+VQM Y
Sbjct: 83 GERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVY 245
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.070e-66 Identity = 114/232 (49.14%), Postives = 135/232 (58.19%), Query Frame = 1
Query: 4 EMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTH-----------------------------------------------------------------------NGHLEFFLCDTDDLNDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
E+ NGNY EP+ ISVRHGICGDPEQT E +N YG NS YPV Y+EG I+E+KIVVST H +GHLEFF+C+ +D++DPDG VTQGCFNMHPLDRA+DDGDASPIDP++ GRY+LDP CR+ ETDQ L GA+PGDV TARY+LPSG+TCSRCI+QM Y
Sbjct: 78 EVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVY 309
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 220 bits (561), Expect = 1.530e-66 Identity = 104/163 (63.80%), Postives = 121/163 (74.23%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLND-PDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
G A NGNYLE D ++ RHGICGDPEQTA E N+YG N YPVL TY EG ++EVKI+VST H GH+E FLCDT DL + D VTQ CFN +PLDRA DD PIDP Y GR+ LDP CR++ETDQ +++GA+PGDV TARYQLP GV C RC+VQM Y
Sbjct: 87 GARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVY 249
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 227 bits (578), Expect = 1.920e-66 Identity = 106/163 (65.03%), Postives = 125/163 (76.69%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDL-NDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
G+ A NGNY+E + ++ RHGICGDPEQTA E SN YG NS YPVLETY EG I+E K+VVST H GH+E FLCD +DL PD VTQ CFN HPLDR +DD SPIDP+ GR+ LDP CR++ETDQ +LDGAFPGDV TAR++LP GV+C RC+VQM Y
Sbjct: 82 GDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVY 244
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 210 bits (535), Expect = 2.930e-64 Identity = 94/162 (58.02%), Postives = 118/162 (72.84%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLNDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GEMA NGNYLE D I+ RHGICGDPEQ +E +N Y N +P+L TY EG ++E+K+ ++ H GH+EFF+C+ D++ DPDG Q CFN +PL RAE D + SPIDPNYPGRY++DP CR ETDQT +GA G V+ A YQLP G+TC RCI+QM Y
Sbjct: 59 GEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNY 220
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 196 bits (499), Expect = 1.130e-58 Identity = 100/162 (61.73%), Postives = 113/162 (69.75%), Query Frame = 1
Query: 4 EMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLND-PDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
E NGNY++ D +TA E SNRYG NS YPVLETY EG I+EVKIVV+T H GH+E FLCD DDL D PD VTQ CFN +PLDRAEDD SPIDP GR+ LDP CR++ETDQ +L GAF GDV TAR+QLP GVTC RC+VQM Y
Sbjct: 45 EPGGNGNYIQSD-------------ETAAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVY 193
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.480e-58 Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 1
Query: 1 GEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSIMEVKIVVSTTHNGHLEFFLCDTDDLNDPDGAVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPTCRSTETDQTILDGAFPGDVVTARYQLPSGVTCSRCIVQMAY 486
GE A NGNYLE + I+ RHG+CGDPEQ ADE +N Y AN + L+++T G ++E+ IV++ H GH EFF+C+TDD++DPDG TQ CFNMHPL RA+DDGDASPIDPNYPGRY++DP CR ET+Q+ + G + RY LP + C CI+QM Y
Sbjct: 88 GEFADNGNYLETNEIAKRHGVCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLPD-IECEHCILQMVY 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81839.15851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81839.15851.1 >prot_H-elongata_contig81839.15851.1 ID=prot_H-elongata_contig81839.15851.1|Name=mRNA_H-elongata_contig81839.15851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp MATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGback to top mRNA from alignment at H-elongata_contig81839:303..2726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81839.15851.1 ID=mRNA_H-elongata_contig81839.15851.1|Name=mRNA_H-elongata_contig81839.15851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2424bp|location=Sequence derived from alignment at H-elongata_contig81839:303..2726+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81839:303..2726+ >mRNA_H-elongata_contig81839.15851.1 ID=mRNA_H-elongata_contig81839.15851.1|Name=mRNA_H-elongata_contig81839.15851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig81839:303..2726+ (Himanthalia elongata Himel1 dioecious)back to top |