mRNA_H-elongata_contig81432.15809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81432.15809.1
Unique NamemRNA_H-elongata_contig81432.15809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.420e-63
Identity = 174/489 (35.58%), Postives = 229/489 (46.83%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKD-SRKLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYISYDDLLRDVRDYTSVLDFTANSPAH--------------HENATHA------------PAPTRRGTAIRNSR--------------------------------IPWPNVVR--QRAAAKPTG--------------------------------------------AVTCYRGVR--------PNNNSNNNHAALAERFQQRICMMLAIAVELNYEVHMLDMQTAFLNANVEEEVFVKMAPGYETNDKSGVPLVMKLKKSLHGLRQSPKQWFGMMDVELAVIGFRPLK 1131
            G RI   R  +G E+T  EFRQYC + GI  EFA+ N  QQI  +ER GRT+  +VRC+LAD + P+ +WG L  TA YL NR P  AL+  TP+K L+G++  L HLRVIGSR  VH +  +RKLE  A EG++ GYS +SKSYR++N +TRRV  SRNV+FIE PP        ++P+ D     +  DD      Y ++DD++RDVR+YT      +  P H              HE                  AP   G  IR  R                                   P+V R  + A A P G                                            A   ++G          P  +  N +A +  RFQ  I M+  IAV+ N E+  +D+ TAFL A++ E VFV+  PG+E  DK G  LVM+L+KSL+GL QSP  WF  +D  L  IGF PLK
Sbjct:  163 GERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETPP--------VAPALD----EFGFDDREFT--YDTHDDMVRDVRNYTFNHSIDSLPPDHDVGDIPVIELLEQIHETTNRDLGVSSAGTPPTDDAPRTSGETIRELRRISYAFTAKGEFPDVAHRDGSFGFTEHAYAMGASQPDVPRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVC-RFQS-IRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLK 635          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.090e-59
Identity = 150/381 (39.37%), Postives = 205/381 (53.81%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKDSRK-LETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPS---QDLVPPSWNLDD--DTLDNDYISYDDLLRDVRD-YTSVLDFTANSPAHHENATHAP-APTRRGTAIRNSRIPWPNVVRQRAAAKPTGAVTCYRGVRPNNNSNNNHAALAERFQQRICMMLAIAVELNYEVHMLDMQTAFLNANVEEEVFVKMAPGYET-NDKSGVPLVMKLKKSLHGLRQSPKQWFGMMDVELAVIGF 1119
            G RI   R  KGGE  G EFR YC  + I  E+AATNT QQI VSER G+TL  + RC+L DG FP SMWG L +TAAYL NR+   AL   TP+  LH + P+LS LRVIG+R  VH +  RK L+  A EGK+CG+  +S++Y V NP  R VVESRNV FIE PP  +P       +    D++  +  LD    T D D+   ++LLR  R+ +        N+   H      P +   +G  I  ++  +   +  R  A+    V       P  +   ++A +      R  M  AI    N+ ++ LD+  AFLNA  + +V+V+ APG    N  +G P+V KL++SL+GL QSP  W   +D  L V G+
Sbjct:  506 GYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLHNQSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYWVLNPSNRAVVESRNVTFIEFPPRSVPFQYSTEANGYESDVLRFTSLLDSPHSTSDLDFTPQNELLRQEREIWKGACSKEMNNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKAR---LVVGGHRQEPGQDYGRSYAPVCRIGSIR--MTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGW 881          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.780e-57
Identity = 145/416 (34.86%), Postives = 211/416 (50.72%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKDSR-KLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIE----APPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYI---------------------SYDDLLR--DVRDYTSVLDFTANSPAHHENATHAPAPTRRGTAIRNSRIPWPNVVRQRAAAKPTGAVTCYR----------------GVRPNNNSNNNHAALAERFQQRICMMLAIAVELNYEVHMLDMQTAFLNANVEEEVFVKMAPGYETNDK-SGVPLVMKLKKSLHGLRQSPKQWFGMMDVELAVIG 1116
            G R+ R R+  GGEYT E +R +C   GI+QEF A  T QQ  +SER GRTL  +VRC++  G  P  +WG L  T  ++ NR P   L  +TP+  + G++  L HLRVIGS   VH++  + KL   A  G + GYS +S++YRV+NP+T+R+V SRNV FIE    A P ++P P++L    +      ++  D   + YI                     +Y + +R  D   + + +D    S   H+ A   P            R+P          AKP G+   Y+                G R   +    +  ++ RF  ++  M AIA E  Y+V  +D+ TAFL + VEEEV+V+ A GYE  D+ +G+PLVMKLKKSL+GL+QSP+ +       +  IG
Sbjct:  106 GFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPMDAAMPPVIPTPAELRNDTEN---ELSVSSDVNQDQYIRIKTPSAGEPVRPPACIPIPTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPV----------QRLP--------PGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVS-RFSSQLVFM-AIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIG 498          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.730e-51
Identity = 110/226 (48.67%), Postives = 142/226 (62.83%), Query Frame = 1
Query:   10 RIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKD-SRKLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDND---YISYDDLLRDVRDYTSVLDFTANSPAH 675
            RI   RAGKG E+T   +RQYCL+ GI  +FA+ NT  QI  +ER GRT+  +VRCMLAD + PS +WG L  TA YL NRTP  AL   TP+K L G +  L HLRV+G+R  VH +  ++KL++ A EG++ GYS +SKSYR++N +TRRV ESRNVIFIE  P                PPS  LD+   D+    Y  +DD++RDVR+YT+     A SP H
Sbjct:  601 RIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNP---------------APPS--LDERGFDDGEFTYADHDDMIRDVRNYTTNHSVDALSPTH 809          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.370e-50
Identity = 106/222 (47.75%), Postives = 138/222 (62.16%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKDSRK-LETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYISYDDLLRDVRDYTSVLDFTANS 666
            G +I   R  KGGE TG +FR YC  + I  E+AATNT QQI VSER G+TL  + RC+L DG FP SMWG + +TAAYL NR+P  AL   TP+  LH + P+LS LRVIG+R  VH +  RK L+  A EGK+CG+  +S++YRV +P    VVESRNV FIE+PP               VP  ++ + +  ++D +S+  LL D    TS LDFTA +
Sbjct:  119 GYQIETIRCDKGGENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLDPSNGAVVESRNVTFIESPPR-------------SVPFQYSTEANGYESDVLSFTSLL-DSPHSTSDLDFTAQN 326          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.670e-50
Identity = 109/222 (49.10%), Postives = 138/222 (62.16%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKDSRK-LETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYISYDDLLRDVRDYTSVLDFTANS 666
            G RI   R  KGGE TG EFR YC  +    E+AATNTTQQI VSER G+TL  + RC+L DG FP SMWG L +TAAYL NR+P  AL   TP+  LH + P+LS LRVIG+R  VH +  RK L+  A EGK+CG+  +S++YRV NP    VVESRNV FIE+PP               VP  ++ + +  ++D +S+  L+ D    TS LDFTA +
Sbjct:   56 GYRIETIRCDKGGENTGSEFRDYCKNSATKLEYAATNTTQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPPR-------------SVPVQYSTEANGYESDVLSFTSLM-DSPHSTSDLDFTAQN 263          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 3.340e-50
Identity = 106/222 (47.75%), Postives = 135/222 (60.81%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKDSRK-LETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYISYDDLLRDVRDYTSVLDFTANS 666
            G RI   R  KGGE TG EFR YC  + I  E+AATNT QQI  SER G+TL  + RC+L DG FP SMW  L +TAAYL NR+P  AL   TP+  LH + P+LS LRVIG+R  VH +  RK L+  A EGK+CG+  +S++YRV NP    VVESRN+ FIE+ P               VP  ++ + +  ++D +S+  LL D    TS LDFTA +
Sbjct:    8 GYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIESLPR-------------SVPFQYSTEANGYESDVLSFTSLL-DSPHSTSDLDFTAQN 215          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KIP3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP3_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 3.640e-50
Identity = 150/422 (35.55%), Postives = 206/422 (48.82%), Query Frame = 1
Query:    4 GRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIK--DSRKLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPP---PSQLSPSQD------LVPPSWNLDDDTLDNDYISYDDLL--------------RDVRDYTSVLD----FTANSPAHHENA-THAPAPTRRGTAIRN--------SRIPWPNVVRQRA---AAKPTGAVTCYRGVRPNNN------SNNNHAALAERFQQRICMMLAIAVELNYEVHMLD---MQTAFLNANVEEEVFVKMAPGYETNDKS-GVPLVMKLKKSLHGLRQSPKQWFGMMDVELAVIG 1116
            G RI   R  KGGE TGEE R YC E+ I  EFAATNT Q+I VSER G+TL A+ R +L DG FP  +WG L MTAAYL NRTP  AL   TP+  ++   P+LS LR IG+R  VH +  + +KL+    E K+CGY  +SK+YR++     +V ESRNV FIE PP+ +PP     +L   QD      L+    +  D+    DY +  +LL               ++R   + +D    F A     + N  T  P+ T + T + +        S  P P  +R+     AA P  + T      P  N        +N A L  R        L+      +         +   FLNA  + +V+V+ APG E  D + G  +V KL+KSL+GL QSP  W   ++  L + G
Sbjct:  277 GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHIWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYNKKKLDYRTFEDKLCGYGSDSKTYRIYVEGKDKVYESRNVTFIETPPNTIPPHRWDDRLGYEQDVMNFTSLLGRRTSTGDEDNKVDYGTQSELLLHEMRNMQQDNISRAELRQNNAGMDSDNYFAAGGADSNNNPRTTTPSRTSQDTTLESPTTPTDTDSASPAPISMRRLTVTRAALPWLSATPTHWSSPRINYSISPIKRSNDALLTRRILLTWMKTLSPKSPYAFATGTSSKGFLGETFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFG 698          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 8.830e-50
Identity = 109/226 (48.23%), Postives = 141/226 (62.39%), Query Frame = 1
Query:   10 RIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKD-SRKLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDND---YISYDDLLRDVRDYTSVLDFTANSPAH 675
            RI   RA KG E+T   +RQYCL+ GI  +FA+ NT  QI  +ER GRT+  +VRCMLAD + PS +WG L  TA YL NRTP  AL   TP+K L G +  L HLRV+G+R  VH +  ++KL++ A EG++ GYS +SKSYR++N +TRRV ESRNVIFIE  P                PPS  LD+   D+    Y  +DD++RDVR+YT+     A SP H
Sbjct:  695 RIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTP---------------APPS--LDERGFDDGEFTYADHDDMIRDVRNYTTNHSVDALSPTH 903          
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.370e-49
Identity = 109/226 (48.23%), Postives = 141/226 (62.39%), Query Frame = 1
Query:   10 RIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVGRTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLHGEEPELSHLRVIGSRTSVHIKD-SRKLETAASEGKVCGYSEESKSYRVWNPKTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDND---YISYDDLLRDVRDYTSVLDFTANSPAH 675
            RI   RA KG E+T   +RQYCL+ GI  +FA+ NT  QI  +ER GRT+  +VRCMLAD + PS +WG L  TA YL NRTP  AL   TP+K L G +  L HLRV+G+R  VH +  ++KL++ A EG++ GYS +SKSYR++N +TRRV ESRNVIFIE  P                PPS  LD+   D+    Y  +DD++RDVR+YT+     A SP H
Sbjct:  924 RIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTP---------------APPS--LDERGFDDGEFTYADHDDMIRDVRNYTTNHPVDALSPTH 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81432.15809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL37_9PHAE7.420e-6335.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8P7_9PHAE6.090e-5939.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCZ9_9PHAE3.780e-5734.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JYB5_9PHAE7.730e-5148.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF63_9PHAE1.370e-5047.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KLG0_9PHAE1.670e-5049.10Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQ40_9PHAE3.340e-5047.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KIP3_9PHAE3.640e-5035.55Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KJN3_9PHAE8.830e-5048.23Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE1.370e-4948.23Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81432contigH-elongata_contig81432:7..1389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score146.7
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1134
Cds size1134
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.295975-CDS-H-elongata_contig81432:6..4521622931222.295975-CDS-H-elongata_contig81432:6..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81432 7..452 -
1691679748.1546493-CDS-H-elongata_contig81432:6..4521691679748.1546493-CDS-H-elongata_contig81432:6..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81432 7..452 -
1622931222.312455-CDS-H-elongata_contig81432:701..13891622931222.312455-CDS-H-elongata_contig81432:701..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81432 702..1389 -
1691679748.1713696-CDS-H-elongata_contig81432:701..13891691679748.1713696-CDS-H-elongata_contig81432:701..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81432 702..1389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81432.15809.1prot_H-elongata_contig81432.15809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81432 7..1389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81432.15809.1

>prot_H-elongata_contig81432.15809.1 ID=prot_H-elongata_contig81432.15809.1|Name=mRNA_H-elongata_contig81432.15809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=378bp
LGRRIVRWRAGKGGEYTGEEFRQYCLETGIIQEFAATNTTQQIDVSERVG
RTLRAMVRCMLADGSFPSSMWGGLFMTAAYLKNRTPPKALKIKTPFKMLH
GEEPELSHLRVIGSRTSVHIKDSRKLETAASEGKVCGYSEESKSYRVWNP
KTRRVVESRNVIFIEAPPHLLPPPSQLSPSQDLVPPSWNLDDDTLDNDYI
SYDDLLRDVRDYTSVLDFTANSPAHHENATHAPAPTRRGTAIRNSRIPWP
NVVRQRAAAKPTGAVTCYRGVRPNNNSNNNHAALAERFQQRICMMLAIAV
ELNYEVHMLDMQTAFLNANVEEEVFVKMAPGYETNDKSGVPLVMKLKKSL
HGLRQSPKQWFGMMDVELAVIGFRPLK*
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mRNA from alignment at H-elongata_contig81432:7..1389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81432.15809.1 ID=mRNA_H-elongata_contig81432.15809.1|Name=mRNA_H-elongata_contig81432.15809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-elongata_contig81432:7..1389- (Himanthalia elongata Himel1 dioecious)
CTCGGCCGCCGCATCGTTCGTTGGCGCGCCGGTAAGGGCGGCGAGTACAC CGGGGAGGAGTTCCGGCAGTACTGCTTGGAGACCGGTATTATCCAAGAGT TCGCTGCAACCAACACGACACAGCAAATCGATGTGTCCGAACGAGTGGGG AGGACTCTGCGGGCGATGGTTCGGTGCATGCTCGCAGACGGCAGCTTCCC ATCGTCCATGTGGGGGGGGCTGTTCATGACGGCCGCGTACCTCAAGAACA GGACTCCGCCCAAGGCACTCAAGATTAAAACGCCGTTCAAGATGCTTCAC GGCGAGGAACCCGAACTCTCGCACCTTCGCGTTATCGGATCCAGAACCTC CGTGCACATCAAGGACTCCAGAAAGCTTGAAACCGCGGCTTCGGAAGGGA AGGTGTGCGGCTACAGCGAGGAGAGCAAATCCTACCGAGTCTGGAACCCG AAGACTCGCCGCGTCGTGGAGAGCAGGAACGTCATCTTCATCGAGGCACC GCCACACCTACTTCCCCCGCCTTCTCAGCTTTCTCCGTCGCAAGATCTGG TGCCGCCGTCATGGAACCTCGATGACGACACTCTGGACAACGACTACATC TCGTACGACGACTTACTGCGGGATGTGAGGGACTACACGAGTGTTTTGGA CTTCACCGCCAACAGCCCCGCTCACCACGAGAACGCCAGTGGCGTTTCGG CCGATCCGCACGTGCAGGGGTTAGTCGAACAAATCCGCAATCTTACCAGG AGAGACTTACTCACGCCCGCTGCACCTTCATCCGGAGCAGCATCACCATC GGAACCATTGCCAGGAGCAGCGTCACTCGGAGCAGGGGGGGCTTCGTCAG AGGGAGCACCATCGCTGAATGGGTCAGGGGAAGCGTCGCCTGGAACAGGG GGAGCTTCGCTAGGGCCCGCGCCGGCTTTTGCTTTAGCGCATGCCCCCGC ACCGACCAGAAGAGGGACCGCTATACGCAACAGCAGGATTCCTTGGCCCA ATGTCGTCAGGCAGCGTGCTGCCGCGAAGCCGACGGGGGCGGTTACCTGT TACAGGGGAGTACGCCCCAATAACAACAGCAACAACAACCACGCCGCTCT GGCGGAACGTTTCCAGCAGAGAATTTGCATGATGCTTGCAATTGCGGTGG AGCTGAACTACGAGGTGCACATGCTAGATATGCAGACGGCATTCCTTAAC GCCAACGTCGAAGAGGAAGTATTCGTCAAGATGGCGCCCGGCTACGAGAC CAACGACAAGTCAGGAGTTCCTCTTGTCATGAAGCTCAAGAAGAGCTTGC ACGGTCTCCGACAGAGCCCGAAGCAATGGTTCGGCATGATGGACGTGGAG CTCGCCGTTATCGGTTTCCGCCCGCTCAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig81432:7..1389-

>mRNA_H-elongata_contig81432.15809.1 ID=mRNA_H-elongata_contig81432.15809.1|Name=mRNA_H-elongata_contig81432.15809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2268bp|location=Sequence derived from alignment at H-elongata_contig81432:7..1389- (Himanthalia elongata Himel1 dioecious)
CTCGGCCGCCGCATCGTTCGTTGGCGCGCCGGTAAGGGCGGCGAGTACAC
CGGGGAGGAGTTCCGGCAGTACTGCTTGGAGACCGGTATTATCCAAGAGT
TCGCTGCAACCAACACGACACAGCAAATCGATGTGTCCGAACGAGTGGGG
AGGACTCTGCGGGCGATGGTTCGGTGCATGCTCGCAGACGGCAGCTTCCC
ATCGTCCATGTGGGGGGGGCTGTTCATGACGGCCGCGTACCTCAAGAACA
GGACTCCGCCCAAGGCACTCAAGATTAAAACGCCGTTCAAGATGCTTCAC
GGCGAGGAACCCGAACTCTCGCACCTTCGCGTTATCGGATCCAGAACCTC
CGTGCACATCAAGGACTCCAGAAAGCTTGAAACCGCGGCTTCGGAAGGGA
AGGTGTGCGGCTACAGCGAGGAGAGCAAATCCTACCGAGTCTGGAACCCG
AAGACTCGCCGCGTCGTGGAGAGCAGGAACGTCATCTTCATCGAGGCACC
GCCACACCTACTTCCCCCGCCTTCTCAGCTTTCTCCGTCGCAAGATCTGG
TGCCGCCGTCATGGAACCTCGATGACGACACTCTGGACAACGACTACATC
TCGTACGACGACTTACTGCGGGATGTGAGGGACTACACGAGTGTTTTGGA
CTTCACCGCCAACAGCCCCGCTCACCACGAGAACGCCACTCGGCCGCCGC
ATCGTTCGTTGGCGCGCCGGTAAGGGCGGCGAGTACACCGGGGAGGAGTT
CCGGCAGTACTGCTTGGAGACCGGTATTATCCAAGAGTTCGCTGCAACCA
ACACGACACAGCAAATCGATGTGTCCGAACGAGTGGGGAGGACTCTGCGG
GCGATGGTTCGGTGCATGCTCGCAGACGGCAGCTTCCCATCGTCCATGTG
GGGGGGGCTGTTCATGACGGCCGCGTACCTCAAGAACAGGACTCCGCCCA
AGGCACTCAAGATTAAAACGCCGTTCAAGATGCTTCACGGCGAGGAACCC
GAACTCTCGCACCTTCGCGTTATCGGATCCAGAACCTCCGTGCACATCAA
GGACTCCAGAAAGCTTGAAACCGCGGCTTCGGAAGGGAAGGTGTGCGGCT
ACAGCGAGGAGAGCAAATCCTACCGAGTCTGGAACCCGAAGACTCGCCGC
GTCGTGGAGAGCAGGAACGTCATCTTCATCGAGGCACCGCCACACCTACT
TCCCCCGCCTTCTCAGCTTTCTCCGTCGCAAGATCTGGTGCCGCCGTCAT
GGAACCTCGATGACGACACTCTGGACAACGACTACATCTCGTACGACGAC
TTACTGCGGGATGTGAGGGACTACACGAGTGTTTTGGACTTCACCGCCAA
CAGCCCCGCTCACCACGAGAACGCCACGCATGCCCCCGCACCGACCAGAA
GAGGGACCGCTATACGCAACAGCAGGATTCCTTGGCCCAATGTCGTCAGG
CAGCGTGCTGCCGCGAAGCCGACGGGGGCGGTTACCTGTTACAGGGGAGT
ACGCCCCAATAACAACAGCAACAACAACCACGCCGCTCTGGCGGAACGTT
TCCAGCAGAGAATTTGCATGATGCTTGCAATTGCGGTGGAGCTGAACTAC
GAGGTGCACATGCTAGATATGCAGACGGCATTCCTTAACGCCAACGTCGA
AGAGGAAGTATTCGTCAAGATGGCGCCCGGCTACGAGACCAACGACAAGT
CAGGAGTTCCTCTTGTCATGAAGCTCAAGAAGAGCTTGCACGGTCTCCGA
CAGAGCCCGAAGCAATGGTTCGGCATGATGGACGTGGAGCTCGCCGTTAT
CGGTTTCCGCCCGCTCAAGTAGCGCATGCCCCCGCACCGACCAGAAGAGG
GACCGCTATACGCAACAGCAGGATTCCTTGGCCCAATGTCGTCAGGCAGC
GTGCTGCCGCGAAGCCGACGGGGGCGGTTACCTGTTACAGGGGAGTACGC
CCCAATAACAACAGCAACAACAACCACGCCGCTCTGGCGGAACGTTTCCA
GCAGAGAATTTGCATGATGCTTGCAATTGCGGTGGAGCTGAACTACGAGG
TGCACATGCTAGATATGCAGACGGCATTCCTTAACGCCAACGTCGAAGAG
GAAGTATTCGTCAAGATGGCGCCCGGCTACGAGACCAACGACAAGTCAGG
AGTTCCTCTTGTCATGAAGCTCAAGAAGAGCTTGCACGGTCTCCGACAGA
GCCCGAAGCAATGGTTCGGCATGATGGACGTGGAGCTCGCCGTTATCGGT
TTCCGCCCGCTCAAGTAG
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