mRNA_H-elongata_contig81413.15805.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI) HSP 1 Score: 175 bits (443), Expect = 2.460e-51 Identity = 95/160 (59.38%), Postives = 107/160 (66.88%), Query Frame = 1
Query: 181 GQAGMRQRRKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
G G + GV+ LRAG D L + EQS + H S F GG+VGVLGTL+AIQLK+N+VKELTACPYCRSTGQLPCA CFG+GS+S+ D VAS+N VTTTTLT DGRGVPLFLNKKVSRDPESEIEDVGYA
Sbjct: 75 GGTGKSRTATGGVRELRAGFDLPGLGA----------LLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 224
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.220e-31 Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 304 SVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
S H +G +GGSVGV+GTL I+ K V++ + C YCR +G L C C G G +++ + V + + +L CP C G T++ C+NCKGDGR VP FLN+K SRDPE E+E++G
Sbjct: 12 SSTEHVSAGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSI----SLGCPTCSGMTYITCINCKGDGRSVPNFLNRKTSRDPEDELEEIG 124
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A8J2WYK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 9.780e-21 Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 205 RKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
R + SLR P P + FE +G AE S F+GG+VG +G++ AI+ K +VK+ CPYC TG + CA C G G C C G+T C NCKG GR +P L+ +VSRDPE+E+E++G
Sbjct: 24 RARPAVSLRPPRRPAPRPTAPRFE-LGHVTAEGLA-----SAFLGGTVGAVGSVVAIEAKRVKVKKSKQCPYCDGTGAIACAACLGTGLTDGEP--------------CRLCGGRTVHTCENCKGRGRFIPTMLDARVSRDPETELEEIG 153
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A0G4F902_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F902_9ALVE) HSP 1 Score: 96.3 bits (238), Expect = 2.610e-20 Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 274 EAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
+ V ++ E + + ++GGSVGV G+L AI LK+ +VK C YCR +G L C C G + I + T T + CP CRG V CVNC+GDG VP L + SRDPE +ED G +
Sbjct: 153 KVVNPQVPEDIRRVGASAAWVGGSVGVGGSLTAIWLKMQKVKSRETCAYCRGSGSLACGSCGDTGVLRILEK----ETGKVTKVDCPTCRGTREVLCVNCRGDGMAVPPMLRTRRSRDPEGLLEDSGLS 277
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A6V1KEG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEG1_HETAK) HSP 1 Score: 80.1 bits (196), Expect = 4.410e-15 Identity = 50/144 (34.72%), Postives = 67/144 (46.53%), Query Frame = 1
Query: 232 AGLDFHPLPVSELFEAVGREI--AEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSV-SIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
+G P+ + + RE + R +GF+GG++GV GTL A+ K +V E CPYC G+L C C G G + + D A+ DGR VPL LN+K SRDPESE+EDVG
Sbjct: 40 SGTPLRMSPIIDSLVLIAREAPATAEIALRDTVTGFVGGAIGVTGTLIALDSKKVKVAERAKCPYCTGDGRLTCVRCLGAGMLPAAADGGAACXXXXX--------XXXXXXXXXXXXXDGRAVPLMLNRKASRDPESELEDVG 175
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.050e-14 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 331 FIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
F GG+VGV+G+L AI+++ Q ++ ACPYC TG+L CA+C+G G V I S V + R VPL L+++ SRDPE E+E++G A
Sbjct: 51 FAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAGKVEIAGAQGSQTVV----VDXXXXXXXXXXXXXXXXXXXRLVPLMLDRRASRDPEDELEEIGLA 156
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S1XU55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU55_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.320e-14 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 331 FIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
F GG+ GVLG+L AI+ K ++ + +ACPYC G+LPCA+C+G G V++ D + R VPL L+++V+RDPE E+ED+G A
Sbjct: 65 FAGGATGVLGSLFAIEYKKSKQRARSACPYCVGEGRLPCAVCWGTGKVTLADTGVEADXXXX--------XXXXXXXXXXXXXXXRMVPLMLDRRVARDPEDELEDIGLA 166
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S2FN65_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FN65_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.500e-13 Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 1
Query: 328 GFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVAST-----------NTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSR-----DPESEIEDVGYA 660
GF+GG+VGV+GTLA ++ ++K+ CPYC G + C MC G G+V IP ++ +T + CP C G VACVNCKG+G +P+ L +K + + + +E++G A
Sbjct: 78 GFLGGTVGVVGTLATYEMGRFRMKQRIVCPYCEG-GVITCGMCLGEGNV-IPQKMSGGGSGNDAGPSPGSTASQLQSQCPNCGGIGVVACVNCKGEGVTIPIMLQRKQNEFGSVDEFDIALEEMGLA 202
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S2WEZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.950e-12 Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 325 SGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGV--PLFLNKKVSRDPESEIEDVG 654
+GF GGSVGVLG + AI++K + K+ + CPYC G L CA C+G G + + V+ + C P L+++VSRDPESE+EDVG
Sbjct: 58 AGFAGGSVGVLGAIFAIEMKKRETKKKSECPYCNGNGHLTCAKCYGSGFMVVTH-VSDQGVPLGQPVRCTXXXXXXXXXXXXXXXXXXXXXXPTILDQRVSRDPESELEDVG 168
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD) HSP 1 Score: 70.9 bits (172), Expect = 6.310e-12 Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 1
Query: 325 SGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTT------------LTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESE 639
+ F GG+VGV+G+L A +L+ + KE CPYC TG+L C C G G + I ++ A + T + C C G V C +C GDGR +P + + D E E
Sbjct: 28 AAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLISEVGAQAKALPKTESPQPLQQQLDGFVKCSQCEGAASVECCHCGGDGRIIPETIEHAATGDLERE 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81413.15805.1 >prot_H-elongata_contig81413.15805.1 ID=prot_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp MNGVIIGWGGQAGMRQRRKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQback to top mRNA from alignment at H-elongata_contig81413:1228..2580+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81413.15805.1 ID=mRNA_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-elongata_contig81413:1228..2580+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81413:1228..2580+ >mRNA_H-elongata_contig81413.15805.1 ID=mRNA_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig81413:1228..2580+ (Himanthalia elongata Himel1 dioecious)back to top |