mRNA_H-elongata_contig81413.15805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81413.15805.1
Unique NamemRNA_H-elongata_contig81413.15805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: D8LSD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD2_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.460e-51
Identity = 95/160 (59.38%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  181 GQAGMRQRRKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
            G  G  +    GV+ LRAG D   L            + EQS + H  S F GG+VGVLGTL+AIQLK+N+VKELTACPYCRSTGQLPCA CFG+GS+S+ D VAS+N VTTTTLT                 DGRGVPLFLNKKVSRDPESEIEDVGYA
Sbjct:   75 GGTGKSRTATGGVRELRAGFDLPGLGA----------LLEQSTRHHIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNEVTTTTLTXXXXXXXXXXXXXXXXXDGRGVPLFLNKKVSRDPESEIEDVGYA 224          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.220e-31
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  304 SVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
            S   H  +G +GGSVGV+GTL  I+ K   V++ + C YCR +G L C  C G G +++ + V + +     +L CP C G T++ C+NCKGDGR VP FLN+K SRDPE E+E++G
Sbjct:   12 SSTEHVSAGILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSI----SLGCPTCSGMTYITCINCKGDGRSVPNFLNRKTSRDPEDELEEIG 124          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A8J2WYK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.780e-21
Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  205 RKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
            R +   SLR      P P +  FE +G   AE        S F+GG+VG +G++ AI+ K  +VK+   CPYC  TG + CA C G G                    C  C G+T   C NCKG GR +P  L+ +VSRDPE+E+E++G
Sbjct:   24 RARPAVSLRPPRRPAPRPTAPRFE-LGHVTAEGLA-----SAFLGGTVGAVGSVVAIEAKRVKVKKSKQCPYCDGTGAIACAACLGTGLTDGEP--------------CRLCGGRTVHTCENCKGRGRFIPTMLDARVSRDPETELEEIG 153          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A0G4F902_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F902_9ALVE)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-20
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  274 EAVGREIAEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
            + V  ++ E   +    + ++GGSVGV G+L AI LK+ +VK    C YCR +G L C  C   G + I +      T   T + CP CRG   V CVNC+GDG  VP  L  + SRDPE  +ED G +
Sbjct:  153 KVVNPQVPEDIRRVGASAAWVGGSVGVGGSLTAIWLKMQKVKSRETCAYCRGSGSLACGSCGDTGVLRILEK----ETGKVTKVDCPTCRGTREVLCVNCRGDGMAVPPMLRTRRSRDPEGLLEDSGLS 277          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A6V1KEG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEG1_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 4.410e-15
Identity = 50/144 (34.72%), Postives = 67/144 (46.53%), Query Frame = 1
Query:  232 AGLDFHPLPVSELFEAVGREI--AEQSVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSV-SIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 654
            +G      P+ +    + RE     +   R   +GF+GG++GV GTL A+  K  +V E   CPYC   G+L C  C G G + +  D  A+                           DGR VPL LN+K SRDPESE+EDVG
Sbjct:   40 SGTPLRMSPIIDSLVLIAREAPATAEIALRDTVTGFVGGAIGVTGTLIALDSKKVKVAERAKCPYCTGDGRLTCVRCLGAGMLPAAADGGAACXXXXX--------XXXXXXXXXXXXXDGRAVPLMLNRKASRDPESELEDVG 175          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7R9U8V3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-14
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  331 FIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
            F GG+VGV+G+L AI+++  Q ++  ACPYC  TG+L CA+C+G G V I     S   V    +                    R VPL L+++ SRDPE E+E++G A
Sbjct:   51 FAGGTVGVMGSLVAIEIRKLQQRKRNACPYCVGTGRLTCAVCWGAGKVEIAGAQGSQTVV----VDXXXXXXXXXXXXXXXXXXXRLVPLMLDRRASRDPEDELEEIGLA 156          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S1XU55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU55_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-14
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  331 FIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESEIEDVGYA 660
            F GG+ GVLG+L AI+ K ++ +  +ACPYC   G+LPCA+C+G G V++ D     +                           R VPL L+++V+RDPE E+ED+G A
Sbjct:   65 FAGGATGVLGSLFAIEYKKSKQRARSACPYCVGEGRLPCAVCWGTGKVTLADTGVEADXXXX--------XXXXXXXXXXXXXXXRMVPLMLDRRVARDPEDELEDIGLA 166          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S2FN65_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FN65_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-13
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  328 GFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVAST-----------NTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSR-----DPESEIEDVGYA 660
            GF+GG+VGV+GTLA  ++   ++K+   CPYC   G + C MC G G+V IP  ++             +T +     CP C G   VACVNCKG+G  +P+ L +K +      + +  +E++G A
Sbjct:   78 GFLGGTVGVVGTLATYEMGRFRMKQRIVCPYCEG-GVITCGMCLGEGNV-IPQKMSGGGSGNDAGPSPGSTASQLQSQCPNCGGIGVVACVNCKGEGVTIPIMLQRKQNEFGSVDEFDIALEEMGLA 202          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S2WEZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEZ4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.950e-12
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  325 SGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGV--PLFLNKKVSRDPESEIEDVG 654
            +GF GGSVGVLG + AI++K  + K+ + CPYC   G L CA C+G G + +   V+         + C                       P  L+++VSRDPESE+EDVG
Sbjct:   58 AGFAGGSVGVLGAIFAIEMKKRETKKKSECPYCNGNGHLTCAKCYGSGFMVVTH-VSDQGVPLGQPVRCTXXXXXXXXXXXXXXXXXXXXXXPTILDQRVSRDPESELEDVG 168          
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Match: A0A7S1TK16_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK16_9RHOD)

HSP 1 Score: 70.9 bits (172), Expect = 6.310e-12
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 1
Query:  325 SGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAMCFGMGSVSIPDMVASTNTVTTTT------------LTCPCCRGKTFVACVNCKGDGRGVPLFLNKKVSRDPESE 639
            + F GG+VGV+G+L A +L+  + KE   CPYC  TG+L C  C G G + I ++ A    +  T             + C  C G   V C +C GDGR +P  +    + D E E
Sbjct:   28 AAFAGGTVGVMGSLIAWELRQLRDKESKQCPYCLGTGRLRCGRCLGQGELLISEVGAQAKALPKTESPQPLQQQLDGFVKCSQCEGAASVECCHCGGDGRIIPETIEHAATGDLERE 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81413.15805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LSD2_ECTSI2.460e-5159.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YP24_9STRA2.220e-3146.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2WYK4_9STRA9.780e-2137.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4F902_9ALVE2.610e-2040.31Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6V1KEG1_HETAK4.410e-1534.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U8V3_9STRA1.050e-1438.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XU55_9STRA1.320e-1437.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FN65_9STRA3.500e-1335.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WEZ4_9STRA2.950e-1236.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1TK16_9RHOD6.310e-1234.19Hypothetical protein n=1 Tax=Erythrolobus australi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81413contigH-elongata_contig81413:1228..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-21_003250.1
Exons2
Model size688
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81413.15805.1prot_H-elongata_contig81413.15805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81413 1381..2555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.9188735-UTR-H-elongata_contig81413:1227..13801622931221.9188735-UTR-H-elongata_contig81413:1227..1380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81413 1228..1380 +
1691679747.92023-UTR-H-elongata_contig81413:1227..13801691679747.92023-UTR-H-elongata_contig81413:1227..1380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81413 1228..1380 +
1622931221.964395-UTR-H-elongata_contig81413:2555..25801622931221.964395-UTR-H-elongata_contig81413:2555..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81413 2556..2580 +
1691679747.948875-UTR-H-elongata_contig81413:2555..25801691679747.948875-UTR-H-elongata_contig81413:2555..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81413 2556..2580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.9339488-CDS-H-elongata_contig81413:1380..16051622931221.9339488-CDS-H-elongata_contig81413:1380..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81413 1381..1605 +
1691679747.9288177-CDS-H-elongata_contig81413:1380..16051691679747.9288177-CDS-H-elongata_contig81413:1380..1605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81413 1381..1605 +
1622931221.9492238-CDS-H-elongata_contig81413:2270..25551622931221.9492238-CDS-H-elongata_contig81413:2270..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81413 2271..2555 +
1691679747.9380822-CDS-H-elongata_contig81413:2270..25551691679747.9380822-CDS-H-elongata_contig81413:2270..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81413 2271..2555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81413.15805.1

>prot_H-elongata_contig81413.15805.1 ID=prot_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MNGVIIGWGGQAGMRQRRKKGVQSLRAGLDFHPLPVSELFEAVGREIAEQ
SVKRHWQSGFIGGSVGVLGTLAAIQLKVNQVKELTACPYCRSTGQLPCAM
CFGMGSVSIPDMVASTNTVTTTTLTCPCCRGKTFVACVNCKGDGRGVPLF
LNKKVSRDPESEIEDVGYA*
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mRNA from alignment at H-elongata_contig81413:1228..2580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81413.15805.1 ID=mRNA_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-elongata_contig81413:1228..2580+ (Himanthalia elongata Himel1 dioecious)
GTCTGGCCCAAGGAGCTCTCTACCGAAGCCTTTGTTGCTCCCTCGCACCA ACTTTCACAGATCATCGCGGGTAGCCGATGTGGTAAGGGTACTCGTAGGA GACCTGAGACAACAGTCCAAGCTTCCTCACGAATAAAGGCAATAGCGGAC GGTATGAATGGGGTAATTATAGGTTGGGGGGGACAGGCCGGCATGCGGCA AAGGCGGAAGAAAGGCGTACAAAGCTTGAGAGCAGGACTTGACTTCCATC CTTTGCCTGTGTCAGAGCTTTTCGAAGCCGTCGGCAGAGAGATCGCCGAG CAGAGCGTCAAGCGTCACTGGCAGAGCGGTTTCATCGGGGGCTCGGTGGG CGTCCTCGGTACCTTGGCGGCTATTCAGGTGCGAGGCTTATTTCACGCGT ACACTTTAAAACGCGAGCTTGAGCCTGGCCTGCATGAAAGTATCTTACTC AGACAACCTTGAACCACGGGATTGTTTCGTGCATGCAGCAGATATGGTAA CCGTAGTTGTATCCAAGGGCTGGTTGATATTACGCGTTTTCGATGAAGTC CGTGTGGCGTCCCAGAGAAAAGTAGCGCCGGACTGACTGCTCTGTTTCAT GATGGAATACATGCTTACACCCTACCATACGCTATCACTAGCTGACATTT CTGTTTTTCGGATCATCGCAAAATCTACAGAATGTCATCTCATTTAGTTT TGGTGTCGCAGGAGATTCTAACGACGTAATCTGACGTACAGTATAGACTT TACACAACCTTTGGAAGAAGGAACCGTGTACAGACAGCCGGTACGCTAGG GGTGTAGACCCGATGCAGTCTACAAGCCCCTTCAGTGCGCACGTGCCCGC TGGAGGCAAGACGGCCGGGATCTTGCCTCGTTCATGCGATGAAATCTAGT ACGGTGTCGCGTGCTTTAATCAATTGAAACTAAAAAAGCTTGATCGTTCG CAGCAGTCACCTGCTTGCTTGGTCAGCGGCGCACCGGCTTGATCGCGCCT GAAAAACTCCCGTCCGCCGACTTCGCATCTCCCTTTCCTGAAGCTCAAGG TCAATCAGGTGAAGGAGCTCACGGCATGTCCCTACTGTCGCTCCACCGGC CAGCTTCCGTGCGCCATGTGCTTCGGGATGGGCTCGGTCTCCATTCCCGA TATGGTCGCCTCCACCAACACCGTGACCACGACCACCCTAACCTGCCCTT GCTGCCGGGGCAAGACGTTCGTCGCGTGCGTCAACTGCAAGGGCGACGGT CGCGGGGTGCCGCTTTTCCTCAACAAGAAGGTCTCGCGCGACCCGGAGAG CGAGATCGAGGATGTTGGATATGCTTGATGCCTTCCGCGAAAGCAGCCTT CGT
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Coding sequence (CDS) from alignment at H-elongata_contig81413:1228..2580+

>mRNA_H-elongata_contig81413.15805.1 ID=mRNA_H-elongata_contig81413.15805.1|Name=mRNA_H-elongata_contig81413.15805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig81413:1228..2580+ (Himanthalia elongata Himel1 dioecious)
ATGAATGGGGTAATTATAGGTTGGGGGGGACAGGCCGGCATGCGGCAAAG
GCGGAAGAAAGGCGTACAAAGCTTGAGAGCAGGACTTGACTTCCATCCTT
TGCCTGTGTCAGAGCTTTTCGAAGCCGTCGGCAGAGAGATCGCCGAGCAG
AGCGTCAAGCGTCACTGGCAGAGCGGTTTCATCGGGGGCTCGGTGGGCGT
CCTCGGTACCTTGGCGGCTATTCAGATGAATGGGGTAATTATAGGTTGGG
GGGGACAGGCCGGCATGCGGCAAAGGCGGAAGAAAGGCGTACAAAGCTTG
AGAGCAGGACTTGACTTCCATCCTTTGCCTGTGTCAGAGCTTTTCGAAGC
CGTCGGCAGAGAGATCGCCGAGCAGAGCGTCAAGCGTCACTGGCAGAGCG
GTTTCATCGGGGGCTCGGTGGGCGTCCTCGGTACCTTGGCGGCTATTCAG
CTCAAGGTCAATCAGGTGAAGGAGCTCACGGCATGTCCCTACTGTCGCTC
CACCGGCCAGCTTCCGTGCGCCATGTGCTTCGGGATGGGCTCGGTCTCCA
TTCCCGATATGGTCGCCTCCACCAACACCGTGACCACGACCACCCTAACC
TGCCCTTGCTGCCGGGGCAAGACGTTCGTCGCGTGCGTCAACTGCAAGGG
CGACGGTCGCGGGGTGCCGCTTTTCCTCAACAAGAAGGTCTCGCGCGACC
CGGAGAGCGAGATCGAGGATGTTGGATATGCTTGACTCAAGGTCAATCAG
GTGAAGGAGCTCACGGCATGTCCCTACTGTCGCTCCACCGGCCAGCTTCC
GTGCGCCATGTGCTTCGGGATGGGCTCGGTCTCCATTCCCGATATGGTCG
CCTCCACCAACACCGTGACCACGACCACCCTAACCTGCCCTTGCTGCCGG
GGCAAGACGTTCGTCGCGTGCGTCAACTGCAAGGGCGACGGTCGCGGGGT
GCCGCTTTTCCTCAACAAGAAGGTCTCGCGCGACCCGGAGAGCGAGATCG
AGGATGTTGGATATGCTTGA
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