mRNA_H-elongata_contig8128.15787.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8128.15787.1 vs. uniprot
Match: D7FT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT47_ECTSI) HSP 1 Score: 553 bits (1424), Expect = 7.860e-178 Identity = 380/804 (47.26%), Postives = 481/804 (59.83%), Query Frame = 1
Query: 10 VRLKGNSLFDSGDIPAAMGAYEAQLRLLEGRSDEGALDMISAALLNQASALIRLRKFGEAEARCTRLLASAGSTGGDGGFGDVQAR--ALHFRGFARLRQGLFKGACSDLKSTLAAGDQRGEEARALLAEAEAGAAFSSCRDPEAKXXXXXXXXXXXXXXXXXXXXXXXARRRYYCRNAQPKSGSERGGSEAGS--ALGRNLRMEGIAVSASGDPLAAEMLLRGGLKELRSLGVDVDATLRKRLV-EEEGLMLSALGTMLGQQRKHQEAVGFMREAVDRLEDAIARPLTRQNAEGYKSNNDSTNL---PPLPSTMTTGAGDLPLQLARTLACLGSELLKLQ----SRSGGGGKSHSC-------PGSRQAANAQQS----------------DDSRLGLTTSVDEIVRVLERALLLIKAEAAEVSKSSGAEGAVANVGGVDGGGDCLRGEVGERDYVRHQAATVLDSLSEAYARGKRWEKARSAAEQAVTAWRSLDEPLRAGAAVSLLALGHILLQLHGVGAVLDEASARWEEAVACVNDFT-RPLEAADVRLKVAGYYTAVARADPARLESLEVKIAGHYMAAAGLFCRARKEEERALEHPNGIGPAAVTMRIAVGSSAGPAHNNPDYLPPPLHSH-------RWILKLDLAGREALSLKEYAVAVGDDHDKAVKALSKASELLDLSSATQWNESWTLRKVGVLQDLALALAKSGEYAMSEGKLIDAIAEQEKLDDAKA-----AHRETLTNLYKYLAIARRARGDMPGAKKALDRVESLGGSAGLEEVEGLNRLLGRNRITM 2277
+RL+GNS ++ GD+ A+ AY+AQLR+LEGR DE A++M ALLNQAS I L+KF EAEARC+RLLASA GG +G +AR ALHFRGFAR R GLF GACSDL+S+LAAG G+EARALL EAEAGAA SSC DPEA+ ARRR + +G+E G + AL RNLR+EGIAV+ +GDP +AEMLLR L++LR G EEEGL L+ALG++L Q+ KH +A+ +REAV L++AIA N G +++ TN PP PS L L TLA LG+ LL + + G G S + PG + + + D G + DE + VL+RA ++KAE ++ + + GG+ G + GE D VR Q A VLD+LSEAY R KRWE+AR AAEQ++TAWRSL R GAA SLL+LGH+LLQLHGVGA +EASARWEEA C RP A+VRLK+AGYYT VAR+DPARLESLE KI+ HY AA LF R R E+ +L+ AA R +G A P LPPPL RW +LA +EA + + YA A G+DH+ AV AL+KA +LLD +S + +E WTLRKVGVL LALALA+SGE+AM+E KL++AI E ++LD + H+ TLT+LYKYLAI RRARGD GAK AL +VE+LGG G EE+EGLNRLL + +++
Sbjct: 51 LRLQGNSAYELGDVSKAIAAYDAQLRVLEGRKDEAAVEMTCGALLNQASGFISLKKFKEAEARCSRLLASATPRGGTKAYGGAEARTRALHFRGFARFRLGLFDGACSDLRSSLAAGTSSGDEARALLLEAEAGAAMSSCPDPEAEGREHLRQGRGREAAKSFRDAASRARRR------KDAAGAEAGEGAVATTVALSRNLRLEGIAVAMAGDPPSAEMLLRTALRDLRVGGXXXXXXXXXXXXXEEEGLTLAALGSLLAQRGKHADALEPLREAVAVLDEAIAG--VSANEGGVANSSAGTNARSSPPTPSITEGRITALTRTLTGTLAFLGTSLLAPEVQPSANYGSNGSSTTTTSSGGVTPGVMKGGAEKVTVPAPGFSCDDKGPIVADSGEAGSSKEADEAIDVLKRAHEMLKAETVAMATAGPGQ-----KGGLAGVYSAVGESRGEAD-VRKQTAKVLDTLSEAYGREKRWERARLAAEQSLTAWRSLGVAGRVGAAASLLSLGHLLLQLHGVGAGFEEASARWEEAATCFKGCAERPSVEAEVRLKIAGYYTKVARSDPARLESLEGKISAHYSEAAVLFARERDEKTSSLKRAAEAVAAAQAPRDKTAEGSGSAEPVPP-LPPPLVDSLEPDGRSRW----ELAEQEAFAWEGYAGAAGEDHEAAVTALAKAEKLLDHASVSDKDERWTLRKVGVLHSLALALARSGEHAMAENKLLEAIRELQQLDGVDSIAEACVHKGTLTDLYKYLAIVRRARGDFAGAKAALAKVETLGGCEGSEELEGLNRLLAESAVSV 835 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8128.15787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8128.15787.1 >prot_H-elongata_contig8128.15787.1 ID=prot_H-elongata_contig8128.15787.1|Name=mRNA_H-elongata_contig8128.15787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=748bp MGAYEAQLRLLEGRSDEGALDMISAALLNQASALIRLRKFGEAEARCTRLback to top mRNA from alignment at H-elongata_contig8128:607..8700+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8128.15787.1 ID=mRNA_H-elongata_contig8128.15787.1|Name=mRNA_H-elongata_contig8128.15787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8094bp|location=Sequence derived from alignment at H-elongata_contig8128:607..8700+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8128:607..8700+ >mRNA_H-elongata_contig8128.15787.1 ID=mRNA_H-elongata_contig8128.15787.1|Name=mRNA_H-elongata_contig8128.15787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4488bp|location=Sequence derived from alignment at H-elongata_contig8128:607..8700+ (Himanthalia elongata Himel1 dioecious)back to top |