mRNA_H-elongata_contig80982.15758.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 6.590e-17 Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
GQ Y+Q F YLG ++ GD+ EI R+ AW C +Y R ++D P K+R L+AE +E +LY C+TW+ SG + LR H R+L
Sbjct: 348 GQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLL 440
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.640e-15 Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAH 267
G ++ Q F YLG I G + EI R A CF + S+A+YD P + KVR L+AEV+E +LY CVTW L ++ KLR AH
Sbjct: 119 GMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAH 207
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5JG33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG33_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 6.910e-15 Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
GQ Y+Q F YLG ++ D+ EI R+ AW C +Y R ++D P K+R L+AE +E +LY TW+ SG++ +LR H R+L
Sbjct: 238 GQKYAQTTEFRYLGGLVNEHCDLTREINYRSRGAWACSRRYGRELFDRPKAPFRRKIRLLQAEAMEALLYGYTTWSALSGNYQRLRSIHHRLL 330
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI00077A9CA8 (uncharacterized protein LOC107358129 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A9CA8) HSP 1 Score: 59.7 bits (143), Expect = 8.530e-9 Identity = 33/93 (35.48%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
GQ V+TF YLGSTIS + EI +R A + F + S V++ I++ +K++ +A VL +LY TWT+ L H R L
Sbjct: 41 GQTLQAVETFTYLGSTISRTATIDAEINKRISKASSAFGRLSEKVWERREISLENKLKVYRAVVLTTLLYGSETWTVYRRHEKLLNHFHLRCL 133
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A6H5JIS7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS7_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.140e-8 Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTD---KVRFLKAEVLEVMLYDCVTWTLS 234
GQ Y Q D F YLG TI + G EI R+ AW C+ + + V D K+R L+AEV+E +LY+C +W+L+
Sbjct: 155 GQTYKQTDQFVYLGHTIFADGKADREITSRSCRAWKCYRRNAGTVLRCTTWRRADLQLKIRLLQAEVVETLLYECSSWSLT 235
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A5C6MLY4_9TELE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MLY4_9TELE) HSP 1 Score: 58.2 bits (139), Expect = 7.360e-8 Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 19 VDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
V+TF YLGSTIS + E+ +R G A + F K + V+DN + KV+ +A V+ +LY TWTL S +L + R L
Sbjct: 139 VNTFTYLGSTISDNLSLDVELSKRIGKAASTFRKLTERVWDNGKLTTHTKVQVYRACVISTLLYGSETWTLYSHQERRLNSFYLRCL 225
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI001FB8472B (uncharacterized protein LOC125044886 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB8472B) HSP 1 Score: 57.8 bits (138), Expect = 7.400e-8 Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWT 228
GQ VD+F YLGST+S ++G E+ R A + F + V++ +++T K++ +A VL +LY C TWT
Sbjct: 169 GQELQAVDSFTYLGSTLSRAVNIGAEVINRIAKASSAFGRLRENVWERTGLSLTTKLKVYRAVVLTTLLYACETWT 244
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A5C6N528_9TELE (Reverse transcriptase domain-containing protein n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6N528_9TELE) HSP 1 Score: 57.8 bits (138), Expect = 9.500e-8 Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 19 VDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
++TF YLGSTI+ + E+ RR G A + F K + V+DN + KV+ +A V+ +LY TWTL S +L + R L
Sbjct: 63 INTFTYLGSTITENLSLDVELSRRIGKAASTFRKLTERVWDNGKLTTHTKVQVYRACVISTLLYGSETWTLYSHQERRLNSFYLRCL 149
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: UPI001FB7CC25 (uncharacterized protein LOC125047580 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB7CC25) HSP 1 Score: 56.6 bits (135), Expect = 2.650e-7 Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
GQ VD+F YLGST+S ++ E+ R A + F + V++ +++T K++ +A VL +LY C TW + S +L H L
Sbjct: 119 GQELQAVDSFTYLGSTLSRAVNIDAEVINRIAKASSAFGRLRENVWERRGLSLTTKLKVYRAVVLTTLLYACETWAVYSRHAKQLNRFHLSCL 211
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Match: A0A183TEZ8_SCHSO (Reverse transcriptase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TEZ8_SCHSO) HSP 1 Score: 56.6 bits (135), Expect = 2.770e-7 Identity = 33/93 (35.48%), Postives = 45/93 (48.39%), Query Frame = 1
Query: 1 GQMYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAVTDKVRFLKAEVLEVMLYDCVTWTLSSGDFDKLREAHCRML 279
G V+TFAYLGST+S + E +R A F + +V++ I + K++ KA VL +LY TWTL S KL H L
Sbjct: 161 GAQLKNVETFAYLGSTLSRNAKIDDEFAQRISKASQAFGRLQASVWNRHSIHLNTKLKMYKAVVLTTLLYGAETWTLYSNLAMKLNHFHLSCL 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80982.15758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80982.15758.1 >prot_H-elongata_contig80982.15758.1 ID=prot_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp MYSQVDTFAYLGSTISSVGDVGPEIKRRAGYAWNCFLKYSRAVYDNPYIAback to top mRNA from alignment at H-elongata_contig80982:4..282+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80982.15758.1 ID=mRNA_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig80982:4..282+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80982:4..282+ >mRNA_H-elongata_contig80982.15758.1 ID=mRNA_H-elongata_contig80982.15758.1|Name=mRNA_H-elongata_contig80982.15758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig80982:4..282+ (Himanthalia elongata Himel1 dioecious)back to top |