mRNA_H-elongata_contig80786.15737.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: D7G5U2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5U2_ECTSI) HSP 1 Score: 273 bits (698), Expect = 6.440e-87 Identity = 139/164 (84.76%), Postives = 145/164 (88.41%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYLKSSDVDQSDATP 492
QYVLIRLV TAVAL LQLGHLYTEGDFDPKRGYLWITVVTC SQSWALYVLVLFYR AT+KELVHIHPMGKFLAIKTIVFFSWWQGILIE L+GQG+FASVVGVSS EG S+ D SEHVAQ IQDLLICLEMLVAAVFFFYAFPLSDYLKS Q+ +P
Sbjct: 233 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFYR--ATYKELVHIHPMGKFLAIKTIVFFSWWQGILIEILEGQGYFASVVGVSSGEGGDLSEHDPSEHVAQGIQDLLICLEMLVAAVFFFYAFPLSDYLKSPHDSQASPSP 394
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A835YQ95_9STRA (Organic solute transporter Ostalpha-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ95_9STRA) HSP 1 Score: 152 bits (383), Expect = 3.240e-40 Identity = 80/157 (50.96%), Postives = 106/157 (67.52%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYLKSSDV 471
Q+++IR+ T VAL +QL +G + G++ +T V C SQ WALYVL+LFY THKE+ HIHPMGKFLAIK +V SWWQG+L+E L+ +GH A V G+ P+ H+AQ IQDLLIC EM+VAAV FF+AFPL+D++ + V
Sbjct: 286 QFLIIRVASTLVALYVQLVQ-RLQGHGASQAGHMVVTAVVCCSQMWALYVLLLFYS--VTHKEMSHIHPMGKFLAIKAVVALSWWQGVLVEFLEHKGHIADV-------GQYPAN-----HIAQGIQDLLICAEMMVAAVAFFFAFPLNDFVHHTPV 427
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A7S2R496_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R496_9STRA) HSP 1 Score: 148 bits (374), Expect = 7.000e-40 Identity = 75/156 (48.08%), Postives = 104/156 (66.67%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYLKSSD 468
Q+V++R T A+VLQ LY EG +D RG+LW+++V SQ+WALYVL LFY ATHK+LVHIHP GKFL IK +VFFS+WQG+ I L QG + + + P E VA+ I+DLL+C+EM VAA+ + + FP+SD++ ++D
Sbjct: 229 QFVVVRFCTTVAAVVLQANGLYGEGVYDTHRGFLWLSLVNSASQAWALYVLFLFYH--ATHKDLVHIHPFGKFLCIKAVVFFSYWQGVAIGYLLHQG------SIQELDMQPP------ETVARAIKDLLVCMEMFVAAIAYQFMFPVSDFIGAND 370
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A7S2XZN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN0_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.740e-38 Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKD-DASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDY 453
QYV+ R+V T +A+ ++ LY EG++ P G+ W+T+ CLSQ+WALYVLVLFY ATHK+L IHP KFL IK +VFF WWQG+ +E + +G I D D+ E +++ IQD+LIC+EM A++ F AFP+SD+
Sbjct: 6 QYVVCRVVTTVMAVGMEPFGLYREGEYHPATGFFWVTLANCLSQTWALYVLVLFYH--ATHKDLGDIHPFAKFLCIKAVVFFCWWQGLGVELMIHRG-------------LIDKMDVDSVEALSRGIQDMLICMEMFFASIAFLNAFPVSDF 142
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: K8Z680_NANGC (Transmembrane protein 184c n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z680_NANGC) HSP 1 Score: 141 bits (355), Expect = 1.270e-37 Identity = 69/152 (45.39%), Postives = 100/152 (65.79%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYL 456
QY+ +RL + L+ LY EG++ +RG+ W+TV C+SQ+WALY+L+LFY ATHKEL+ I+P GKF ++K++VF SWWQ +LI + QG G + S ++E VA+ IQDLLIC EM +AA+ F +AFP+SD++
Sbjct: 174 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFYH--ATHKELISINPCGKFFSVKSVVFASWWQSLLIGLMVHQGTI----------GELDSH--SAEMVAKAIQDLLICTEMFMAAIAFTFAFPVSDFV 311
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.700e-36 Identity = 69/152 (45.39%), Postives = 100/152 (65.79%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYL 456
QY+ +RL + L+ LY EG++ +RG+ W+TV C+SQ+WALY+L+LFY ATHKEL+ I+P GKF ++K++VF SWWQ +LI + QG G + S ++E VA+ IQDLLIC EM +AA+ F +AFP+SD++
Sbjct: 769 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFYH--ATHKELISINPCGKFFSVKSVVFASWWQSLLIGLMVHQGTI----------GELDSH--SAEMVAKAIQDLLICTEMFMAAIAFTFAFPVSDFV 906
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A4D9DA43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA43_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.580e-35 Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYL 456
QY+ +RL L+ +Y EG++ +RG+ W+TV C+SQ+WALY+L+LFY ATHKEL+ I+P GKF ++K++VF SWWQ +LI + QG G + S ++E VA+ IQDLLIC EM +AA+ F +AFP+SD++
Sbjct: 227 QYLGVRLATLVFTFALESLDMYAEGEYTVRRGFFWMTVANCISQTWALYILILFYH--ATHKELISINPCGKFFSVKSVVFASWWQSLLIGLMVHQGTI----------GELDSH--SAEMVAKAIQDLLICTEMFMAAIAFTFAFPVSDFV 364
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: B8BWD0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWD0_THAPS) HSP 1 Score: 130 bits (326), Expect = 4.700e-34 Identity = 70/154 (45.45%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQG---HFASVVGVSSAEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDY 453
QYVL+++V + + + L++ LY EGDF P+ GYL+I ++T LSQ WALY L FY AT EL I P+GKFL++K +VFF+WWQ + I L G H+A+V +GR + +E VA+ +QD LIC+EM VAA+ + FP +DY
Sbjct: 142 QYVLLKVVSSIIVMFLEIYGLYKEGDFTPRGGYLYICIITNLSQCWALYCLAFFYY--ATKNELGPIRPVGKFLSVKAVVFFTWWQSLGISILFQMGMIPHYAAV-----DDGR----EWTAEAVAKGLQDYLICIEMFVAAIVHTFVFPHTDY 284
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A7S2WKX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKX9_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.330e-33 Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECLQGQGHFASVVGVSSAEGRI---------PSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYLKS 462
QYVL++ C L++ LY EG+F K GYL+I ++T +SQ WALY ++ FY AT EL I P+GKFL++K IVFF+WWQ + I L G F + +S+E + P + E VA+ +QD LIC+EM +AA+ + FP ++Y+ +
Sbjct: 8 QYVLLKFACAIFVFALEMNGLYKEGNFTYKGGYLYICIITNISQCWALYCMIFFYY--ATKNELGPIRPVGKFLSVKAIVFFTWWQSLFISILFEMGMFHNYSISASSETTLNIGDILEESPGNMWSPEDVAKGLQDYLICIEMFIAAIVHQFVFPHTEYINT 168
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Match: A0A7S4JUS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUS5_9STRA) HSP 1 Score: 125 bits (314), Expect = 6.390e-33 Identity = 72/176 (40.91%), Postives = 95/176 (53.98%), Query Frame = 1
Query: 1 QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVLVLFYRRVATHKELVHIHPMGKFLAIKTIVFFSWWQGILIECL---------QGQGHFASVVGVSS--------------AEGRIPSKDDASEHVAQCIQDLLICLEMLVAAVFFFYAFPLSDYLK 459
QYV+++ C+ +A++L+L LY EGDF K GY +I VT LSQ WALY LV FY AT EL I P+GKFL++K +VFF+WWQ + I L GH GV + GR E VA+ +QD LIC+EM V A+ + FP +DYL+
Sbjct: 27 QYVVLKFFCSFLAMILELCGLYHEGDFSYKYGYFYICFVTNLSQCWALYCLVFFYN--ATKNELGPIRPVGKFLSVKALVFFTWWQSVGISILFQMGMIPGYDAPGHLGPSGGVEEXXXXXXXXXXXXXMSGGRDGRHHMTPEEVAKGLQDYLICIEMFVGAIVHVFVFPHTDYLQ 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80786.15737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80786.15737.1 >prot_H-elongata_contig80786.15737.1 ID=prot_H-elongata_contig80786.15737.1|Name=mRNA_H-elongata_contig80786.15737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp QYVLIRLVCTAVALVLQLGHLYTEGDFDPKRGYLWITVVTCLSQSWALYVback to top mRNA from alignment at H-elongata_contig80786:567..2798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80786.15737.1 ID=mRNA_H-elongata_contig80786.15737.1|Name=mRNA_H-elongata_contig80786.15737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2232bp|location=Sequence derived from alignment at H-elongata_contig80786:567..2798- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80786:567..2798- >mRNA_H-elongata_contig80786.15737.1 ID=mRNA_H-elongata_contig80786.15737.1|Name=mRNA_H-elongata_contig80786.15737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig80786:567..2798- (Himanthalia elongata Himel1 dioecious)back to top |