mRNA_H-elongata_contig80783.15736.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6CJZ5_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CJZ5_9ROSI) HSP 1 Score: 57.8 bits (138), Expect = 2.440e-8 Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 19 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
+DV N D+ +EV++Q PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct: 1148 VDVNNAFLNGDLDNEVFMQQPPGFVQYDSAGQPFVCRLKKALYGLRQAP 1196
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 4.530e-8 Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
YDV +DV + +++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct: 429 YDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 483
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6P4PAH9_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAH9_GOSAR) HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7 Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query: 19 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
+DV N D+ +V++Q PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct: 30 VDVNNAFLNGDLDTKVFMQQPPGFVQYDSTGQPFVCRLKKALYGLRQAP 78
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
Y V +DV +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct: 97 YVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 151
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 4.080e-7 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
Y V +DV +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct: 993 YVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 1047
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 5.560e-7 Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 1 DYDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
D DV+ LDV+ ADI++ V+V+MAPGY + + VMKL+KS+ GL QSP
Sbjct: 404 DLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSP 458
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 6.380e-7 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 165
Y V +DV +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct: 9 YVVETMDVVTEFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 63
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6D0Y5_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0Y5_9ROSI) HSP 1 Score: 53.1 bits (126), Expect = 1.010e-6 Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 10 VLMLDVQVVSR--------------NADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 165
VL++DV +VS+ N D+ EV +Q + GYV Y G PFV +LKK++YGLRQ+P
Sbjct: 36 VLLIDVMLVSKSWPLRQVNVNNSFLNGDLDSEVLMQQSSGYVQYGSDGKPFVCRLKKALYGLRQAP 101
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 1.940e-6 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDW-SGVPFVMKLKKSIYGLRQSP 165
Y V +DV R ++++++VYV+ A GY T D +G+P VMKLKKS+ GL+QSP
Sbjct: 9 YVVETMDVVTAFRQSNVEEDVYVRQAKGYETTDEVTGLPLVMKLKKSLNGLKQSP 63
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 3.650e-6 Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 4 YDVLMLDVQVVSRNADIKDEVYVQMAPGYVTYDWS-GVPFVMKLKKSIYGLRQSP 165
+ V+ +DVQ N + ++VY APG+ + S G P V KLKKS+YGLRQSP
Sbjct: 747 WPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSP 801 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80783.15736.1 >prot_H-elongata_contig80783.15736.1 ID=prot_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp MLDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSPback to top mRNA from alignment at H-elongata_contig80783:373..537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80783.15736.1 ID=mRNA_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig80783:373..537+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80783:373..537+ >mRNA_H-elongata_contig80783.15736.1 ID=mRNA_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig80783:373..537+ (Himanthalia elongata Himel1 dioecious)back to top |