prot_H-elongata_contig80783.15736.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80783.15736.1
Unique Nameprot_H-elongata_contig80783.15736.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6CJZ5_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CJZ5_9ROSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV     N D+ +EV++Q  PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct: 1148 VDVNNAFLNGDLDNEVFMQQPPGFVQYDSAGQPFVCRLKKALYGLRQAP 1196          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6P4PAH9_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAH9_GOSAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV     N D+  +V++Q  PG+V YD +G PFV +LKK++YGLRQ+P
Sbjct:   30 VDVNNAFLNGDLDTKVFMQQPPGFVQYDSTGQPFVCRLKKALYGLRQAP 78          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.490e-7
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:  102 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 151          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:  998 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 1047          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV      +++++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:   14 MDVVTEFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 63          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-6
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGY-VTYDWSGVPFVMKLKKSIYGLRQSP 50
            +DV      + +++EVYV+ A GY +T + +G+P VMKLKKS+YGL+QSP
Sbjct:  434 MDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 483          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J5YEZ0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YEZ0_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.010e-6
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQS 49
            +DV     N D+  EV++Q  P +V YD +G PFV +LKK++YGLRQ+
Sbjct:  906 VDVNNAFLNGDLDTEVFMQQPPDFVQYDSTGQPFVCRLKKALYGLRQA 953          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A8J6D0Y5_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0Y5_9ROSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.390e-6
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   10 NADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 50
            N D+  EV +Q + GYV Y   G PFV +LKK++YGLRQ+P
Sbjct:   61 NGDLDSEVLMQQSSGYVQYGSDGKPFVCRLKKALYGLRQAP 101          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.470e-6
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGYVTYDW-SGVPFVMKLKKSIYGLRQSP 50
            +DV    R ++++++VYV+ A GY T D  +G+P VMKLKKS+ GL+QSP
Sbjct:   14 MDVVTAFRQSNVEEDVYVRQAKGYETTDEVTGLPLVMKLKKSLNGLKQSP 63          
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Match: A0A6A2Z3V1_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z3V1_HIBSY)

HSP 1 Score: 50.1 bits (118), Expect = 1.030e-5
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    2 LDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP 50
            +D+     N D+ +EVY+Q  PG+   +  G PFV KL+K++YGLRQ+P
Sbjct: 1198 VDINNAFLNGDLLEEVYMQQPPGFEKVNEHGKPFVCKLQKALYGLRQAP 1246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80783.15736.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A8J6CJZ5_9ROSI2.670e-851.02Integrase catalytic domain-containing protein n=2 ... [more]
A0A6P4PAH9_GOSAR1.740e-748.98uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6H5JVC8_9PHAE8.490e-750.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE1.140e-650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFG1_9PHAE1.870e-650.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCZ9_9PHAE2.130e-650.00Integrase catalytic domain-containing protein (Fra... [more]
A0A8J5YEZ0_9ROSI4.010e-647.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D0Y5_9ROSI5.390e-653.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE5.470e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A2Z3V1_HIBSY1.030e-544.90Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80783contigH-elongata_contig80783:388..537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80783.15736.1mRNA_H-elongata_contig80783.15736.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80783 373..537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80783.15736.1 ID=prot_H-elongata_contig80783.15736.1|Name=mRNA_H-elongata_contig80783.15736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MLDVQVVSRNADIKDEVYVQMAPGYVTYDWSGVPFVMKLKKSIYGLRQSP
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