mRNA_H-elongata_contig80762.15731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80762.15731.1
Unique NamemRNA_H-elongata_contig80762.15731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: D8LDR4_ECTSI (Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.900e-36
Identity = 73/113 (64.60%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 IGRLHLEHSVDVQCSARLKIPAGDDDGGAVARSAEA-----VDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            IG+LH E+ VDVQC A L +                     VDA  AFL C RTDR DGL+TTVVCDT G+ALGLVYSN+ SIRAS+ESGRGVYWSRSRGGLWRKGDTSGAWQ
Sbjct:  216 IGKLHHEYGVDVQCPATLSLEGXXXXXXXXXXXXXXXXXXXVDAVSAFLTCLRTDRPDGLMTTVVCDTMGIALGLVYSNSTSIRASIESGRGVYWSRSRGGLWRKGDTSGAWQ 328
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A6H5L2R7_9PHAE (PRA-CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.440e-33
Identity = 74/131 (56.49%), Postives = 82/131 (62.60%), Query Frame = 1 
Query:    1 IGRLHLEHSVDVQCSARLKIPAGDDDGGAVARSAEA---VDAAEAFLACTRTDRTDGLITTVVCDTAGVALGL--------------------VYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            IG+LH E+ VDVQC A L +                   VDA  AFLAC RTDR DGL+TTVVCDT G+ALGL                    VYSN++SIRAS+ESGRGVYWSRSRGGLWRKGDTSGAWQ
Sbjct:  154 IGKLHHEYGVDVQCPATLSLEGXXXXXXXXXXXXXXXXXVDAVSAFLACLRTDRPDGLMTTVVCDTMGIALGLQPLPPPPNSCTPNLRTPPSKVYSNSSSIRASIESGRGVYWSRSRGGLWRKGDTSGAWQ 284
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A835ZKL0_9STRA (PRA-CH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.400e-27
Identity = 64/119 (53.78%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:    1 IGRLHLEHSVDVQCSARLK-IPAGDDDGGAVARSAEAV---------DAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQV 327
            IG+LH E  +DV     ++ +P   D                     D A A  AC R+DR DGLI TVVCD  GVALGLVYSNA S+ AS+  GRGVYWSRSRGGLWRKGDTSGAWQ 
Sbjct:  195 IGQLHKEFGIDVVAPCHVESVPDPSDTATPXXXXXXXXXXXXXXXXQDVAAAVFACLRSDRPDGLIPTVVCDECGVALGLVYSNAQSVAASIACGRGVYWSRSRGGLWRKGDTSGAWQA 313
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A7S2V4U4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.330e-25
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:    1 IGRLH-LEHSVDVQCSARLKIPAGDDDGGAVARSAEAVDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            +G +H ++  VD  C A +         G V+        A+AF+AC RTDR DGL TTVV D  GVALGLVYSNA S++AS  + RGVYWSRSRGGLWRKGDTSGA Q
Sbjct:  185 VGAIHRMKPQVDAACPAAILPEDAPPQPGKVSL-------ADAFMACCRTDRPDGLFTTVVVDECGVALGLVYSNALSVKASFAAKRGVYWSRSRGGLWRKGDTSGAVQ 286
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A7S2WIY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIY7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.080e-25
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:  109 VDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            +D  + F+AC RTDR+DGL TTVV D  GVALGLVYSN  SIRA++   RGVYWSRSRGGLWRKGDTSGAWQ
Sbjct:  203 LDLVDCFVACLRTDRSDGLYTTVVADQCGVALGLVYSNPESIRAAVCCSRGVYWSRSRGGLWRKGDTSGAWQ 274
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A2R5GVC6_9STRA (Histidine biosynthesis trifunctional protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVC6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.460e-24
Identity = 65/111 (58.56%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 IGRLHLEHSVDVQCS---ARLKIPAGDDDGGAVARSAEAVDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            IG+LH  HS D   S   A + +P G D    V  S        A ++C RTDRTDGL  TVV D  GVALGLVYS++ASI ASLE GRGVYWSRSR  LWRKGDTSGA+Q
Sbjct:  512 IGKLHSLHSSDYPVSVSHASVSLP-GKDAAVDVPDSDAVFCLGRALVSCLRTDRTDGLYATVVADEFGVALGLVYSSSASILASLECGRGVYWSRSRQSLWRKGDTSGAFQ 621
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A7S0E3V5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E3V5_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 3.720e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  136 CTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQV 327
            C RTDRTDGL+TTVV +  GVALGLVYSN AS+ A++E+GRGVY SRS+GGLWRKGDTSGA+Q 
Sbjct:   19 CARTDRTDGLMTTVVAEEGGVALGLVYSNPASLAAAVEAGRGVYHSRSKGGLWRKGDTSGAYQT 82
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A0G4HM72_9ALVE (PRA-CH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HM72_9ALVE)

HSP 1 Score: 101 bits (252), Expect = 5.430e-23
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  127 FLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSGAWQ 324
            F A  ++DR DGL TTVVCD +GVALGLVYSN  S+ A++E  RGVYWSRSRGGLWRKGDTSGAWQ
Sbjct:  256 FAATLKSDRPDGLFTTVVCDESGVALGLVYSNVQSLHAAVECMRGVYWSRSRGGLWRKGDTSGAWQ 321
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A225X605_9STRA (Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X605_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.990e-23
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   73 DDGGAVARSAEAVDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSG 315
            +D  AV      VDAA AF+ C RTDR DGL TTVV D AGVALGLVYS+A SI A++ SGRGVY+SRSRGGLW+KG++SG
Sbjct:  220 EDVAAVVEGEAVVDAALAFVKCLRTDRPDGLFTTVVADEAGVALGLVYSSAESIIAAVSSGRGVYYSRSRGGLWKKGESSG 300
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BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Match: A0A2P4XN02_9STRA (Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XN02_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.400e-22
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   55 KIPAGDDDGGAVARSAEAVDAAEAFLACTRTDRTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRKGDTSG 315
            ++ A  +DG AV      VDAA+AF+ C RTDR DGL TTVV D AGVALGLVYS++ SI A++ SGRGVY+SRSRGGLW+KG++SG
Sbjct:  226 QVEAVTEDGEAV------VDAAQAFVKCLRTDRPDGLFTTVVADEAGVALGLVYSSSESIIAAVSSGRGVYYSRSRGGLWKKGESSG 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80762.15731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDR4_ECTSI1.900e-3664.60Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarp... [more]
A0A6H5L2R7_9PHAE4.440e-3356.49PRA-CH domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZKL0_9STRA6.400e-2753.78PRA-CH domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2V4U4_9STRA2.330e-2555.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WIY7_9STRA4.080e-2573.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GVC6_9STRA1.460e-2458.56Histidine biosynthesis trifunctional protein n=1 T... [more]
A0A7S0E3V5_9EUKA3.720e-2375.00Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A0G4HM72_9ALVE5.430e-2374.24PRA-CH domain-containing protein n=1 Tax=Chromera ... [more]
A0A225X605_9STRA9.990e-2366.67Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophth... [more]
A0A2P4XN02_9STRA1.400e-2263.22Phosphoribosyl-ATP diphosphatase n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80762contigH-elongata_contig80762:1601..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D8LDR4
Preferred nameHIS4
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.phosphoribosyl-ATP diphosphatase activity
EggNOG OGsCOG0139@1,KOG4311@2759
EC1.1.1.23,3.5.4.19,3.6.1.31
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931213.7600117-CDS-H-elongata_contig80762:1600..18101622931213.7600117-CDS-H-elongata_contig80762:1600..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80762 1601..1810 +
1691679744.3818562-CDS-H-elongata_contig80762:1600..18101691679744.3818562-CDS-H-elongata_contig80762:1600..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80762 1601..1810 +
1622931213.7737334-CDS-H-elongata_contig80762:2244..23641622931213.7737334-CDS-H-elongata_contig80762:2244..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80762 2245..2364 +
1691679744.3931053-CDS-H-elongata_contig80762:2244..23641691679744.3931053-CDS-H-elongata_contig80762:2244..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80762 2245..2364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80762.15731.1prot_H-elongata_contig80762.15731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80762 1601..2364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80762.15731.1

>prot_H-elongata_contig80762.15731.1 ID=prot_H-elongata_contig80762.15731.1|Name=mRNA_H-elongata_contig80762.15731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
IGRLHLEHSVDVQCSARLKIPAGDDDGGAVARSAEAVDAAEAFLACTRTD
RTDGLITTVVCDTAGVALGLVYSNAASIRASLESGRGVYWSRSRGGLWRK
GDTSGAWQV*
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mRNA from alignment at H-elongata_contig80762:1601..2364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80762.15731.1 ID=mRNA_H-elongata_contig80762.15731.1|Name=mRNA_H-elongata_contig80762.15731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig80762:1601..2364+ (Himanthalia elongata Himel1 dioecious)
ATCGGCAGGCTTCATTTGGAGCACAGTGTGGATGTCCAATGTTCCGCACG
CCTGAAGATCCCAGCAGGCGATGACGATGGGGGGGCGGTAGCGAGGAGCG
CGGAGGCGGTGGACGCGGCGGAGGCGTTCCTGGCATGCACGAGGACCGAT
CGCACCGACGGGCTGATAACGACGGTTGTGTGCGACACCGCTGGTGTTGC
GTTGGGGCTGGTGAGTATCGGTTACGCATGCGGAGCGCGAAGAGAACCAT
GTGGAGGGGGGGGGGGGGTGAGACGGGGGCACTGTGGATACCCGCGAAGG
GAAAATCGCGACCAACAACAAGGGCTCTGCGAAGGCATTTTGCCTCTAGT
CGCTATCCCCCGCCCCTTTTGTTAATTATTGTGTTCGTTTGTTTTTCAGT
GGGAGAAGGAGGGAAAATACTCGTATACCGCACCTTATAGAATTCGTGTC
GAGGCCTTGGAGGCTTGACGCTCCGATAGACGAGGTTTACCTCTTTACTC
TTCCGAAGAACGAAACAAGCCAAGCCAAGCCCCTCCTTCAAACAAAACGG
AAACTATTGGGGGGTTTTTACTGATCATCTATGAAAAAGGCGATTCCGTT
CTCTCTCTCCCTCCCCACCCTTCCCAATATGTGGTGGCCAATAGGTATAC
TCGAACGCCGCGAGCATCCGCGCATCCCTGGAGAGTGGTCGAGGGGTATA
CTGGTCACGATCGAGGGGGGGCCTTTGGCGCAAGGGTGACACGAGCGGGG
CGTGGCAGGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig80762:1601..2364+

>mRNA_H-elongata_contig80762.15731.1 ID=mRNA_H-elongata_contig80762.15731.1|Name=mRNA_H-elongata_contig80762.15731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig80762:1601..2364+ (Himanthalia elongata Himel1 dioecious)
ATCGGCAGGCTTCATTTGGAGCACAGTGTGGATGTCCAATGTTCCGCACG
CCTGAAGATCCCAGCAGGCGATGACGATGGGGGGGCGGTAGCGAGGAGCG
CGGAGGCGGTGGACGCGGCGGAGGCGTTCCTGGCATGCACGAGGACCGAT
CGCACCGACGGGCTGATAACGACGGTTGTGTGCGACACCGCTGGTGTTGC
GTTGGGGCTGATCGGCAGGCTTCATTTGGAGCACAGTGTGGATGTCCAAT
GTTCCGCACGCCTGAAGATCCCAGCAGGCGATGACGATGGGGGGGCGGTA
GCGAGGAGCGCGGAGGCGGTGGACGCGGCGGAGGCGTTCCTGGCATGCAC
GAGGACCGATCGCACCGACGGGCTGATAACGACGGTTGTGTGCGACACCG
CTGGTGTTGCGTTGGGGCTGGTATACTCGAACGCCGCGAGCATCCGCGCA
TCCCTGGAGAGTGGTCGAGGGGTATACTGGTCACGATCGAGGGGGGGCCT
TTGGCGCAAGGGTGACACGAGCGGGGCGTGGCAGGTATAAGTATACTCGA
ACGCCGCGAGCATCCGCGCATCCCTGGAGAGTGGTCGAGGGGTATACTGG
TCACGATCGAGGGGGGGCCTTTGGCGCAAGGGTGACACGAGCGGGGCGTG
GCAGGTATAA
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