mRNA_H-elongata_contig8076.15730.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8076.15730.1
Unique NamemRNA_H-elongata_contig8076.15730.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8076.15730.1 vs. uniprot
Match: D7G6V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V9_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.840e-29
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 2 
Query:  386 VAVREEMWSQAARDRDVLETGLELKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERDRELYAQRAALAEEGQELAREDRKRLQTAKEELERQLQETIEMEDRFRKKIIRKFKARENTLRQNFEAQLREARAGA 790
            +AVREEMW+QAARDRD LE  L L+ E                             ERDRELYAQRAALAEEGQE+ARE+R +LQ  KE L RQL+ET+EM+D  R++II KFKARE+ +R+NFEA+LREAR  A
Sbjct:    1 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQEIAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREARGEA 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8076.15730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V9_ECTSI9.840e-2955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8076contigH-elongata_contig8076:5664..9815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012050.1
Exons7
Model size2115
Cds size918
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931213.580666-UTR-H-elongata_contig8076:5663..57151622931213.580666-UTR-H-elongata_contig8076:5663..5715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 5664..5715 +
1691679744.2888446-UTR-H-elongata_contig8076:5663..57151691679744.2888446-UTR-H-elongata_contig8076:5663..5715Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 5664..5715 +
1622931213.70343-UTR-H-elongata_contig8076:8624..95801622931213.70343-UTR-H-elongata_contig8076:8624..9580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 8625..9580 +
1691679744.3599248-UTR-H-elongata_contig8076:8624..95801691679744.3599248-UTR-H-elongata_contig8076:8624..9580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 8625..9580 +
1622931213.7227478-UTR-H-elongata_contig8076:9626..98151622931213.7227478-UTR-H-elongata_contig8076:9626..9815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 9627..9815 +
1691679744.368067-UTR-H-elongata_contig8076:9626..98151691679744.368067-UTR-H-elongata_contig8076:9626..9815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8076 9627..9815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931213.5935917-CDS-H-elongata_contig8076:5715..58971622931213.5935917-CDS-H-elongata_contig8076:5715..5897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 5716..5897 +
1691679744.2976084-CDS-H-elongata_contig8076:5715..58971691679744.2976084-CDS-H-elongata_contig8076:5715..5897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 5716..5897 +
1622931213.6096952-CDS-H-elongata_contig8076:6565..67131622931213.6096952-CDS-H-elongata_contig8076:6565..6713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 6566..6713 +
1691679744.3068166-CDS-H-elongata_contig8076:6565..67131691679744.3068166-CDS-H-elongata_contig8076:6565..6713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 6566..6713 +
1622931213.6272976-CDS-H-elongata_contig8076:7193..73371622931213.6272976-CDS-H-elongata_contig8076:7193..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7194..7337 +
1691679744.3168533-CDS-H-elongata_contig8076:7193..73371691679744.3168533-CDS-H-elongata_contig8076:7193..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7194..7337 +
1622931213.6438837-CDS-H-elongata_contig8076:7585..76991622931213.6438837-CDS-H-elongata_contig8076:7585..7699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7586..7699 +
1691679744.3318992-CDS-H-elongata_contig8076:7585..76991691679744.3318992-CDS-H-elongata_contig8076:7585..7699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7586..7699 +
1622931213.663199-CDS-H-elongata_contig8076:7982..80741622931213.663199-CDS-H-elongata_contig8076:7982..8074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7983..8074 +
1691679744.3437517-CDS-H-elongata_contig8076:7982..80741691679744.3437517-CDS-H-elongata_contig8076:7982..8074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 7983..8074 +
1622931213.6868346-CDS-H-elongata_contig8076:8386..86241622931213.6868346-CDS-H-elongata_contig8076:8386..8624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 8387..8624 +
1691679744.3520665-CDS-H-elongata_contig8076:8386..86241691679744.3520665-CDS-H-elongata_contig8076:8386..8624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8076 8387..8624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8076.15730.1prot_H-elongata_contig8076.15730.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8076 5716..8624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8076.15730.1

>prot_H-elongata_contig8076.15730.1 ID=prot_H-elongata_contig8076.15730.1|Name=mRNA_H-elongata_contig8076.15730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
MVKANGLAAYLLLAWAPACGSNYQGPPPSRSLLGRKIKKADQIRVQAARI
NRLEERIQKLSEEGAFLIERTLHYREIRLKGSQDLRDNIEELKLKLLNQQ
EDMNKDFEAKLVAVREEMWSQAARDRDVLETGLELKQEAEREKMMEEAKQ
RANEIVEEVKAKITAEAERDRELYAQRAALAEEGQELAREDRKRLQTAKE
ELERQLQETIEMEDRFRKKIIRKFKARENTLRQNFEAQLREARAGAMGGA
ARRRQSAKNDLQSASSSSSTPEGSQRAAVKSPTSKAISSGGVGGIPASTG
ATATP*
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mRNA from alignment at H-elongata_contig8076:5664..9815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8076.15730.1 ID=mRNA_H-elongata_contig8076.15730.1|Name=mRNA_H-elongata_contig8076.15730.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4152bp|location=Sequence derived from alignment at H-elongata_contig8076:5664..9815+ (Himanthalia elongata Himel1 dioecious)
GCTACCCAGGTCCCACAGAGTTGGGACTTAACTGCCCTGCGAACCTTGCG
CAATGGTCAAAGCGAACGGTTTAGCTGCTTATTTACTACTTGCGTGGGCT
CCAGCATGCGGAAGTAACTATCAAGGGCCGCCACCGTCAAGATCATTACT
AGGACGTAAAATCAAGAAGGCTGACCAGATCAGGGTGCAGGCGGCGAGAA
TTAACCGTCTGGAGGAGCGCATACAGAAGCTGAGGTGAGCTTGGGTGTAC
CGTCGACAAAGAAATGACGTTGTGAAAAGTATTTTCCCATATATATTCTC
TCCCCCCTTGTTGGTAGGATCTGCGTCCCCTTCAGCTCTACGTCTTTTTG
CAAAGTGCCCGTTTGAATCGAGGGTCGACCCCTCTCCTTTCTAGTGTCTG
TAAAAGCCGGCTCTCAGGCGAACTCGAAGGGGGGAGTCATGGTGTTGGCA
CTGTTGATCTTTAGAACCCATGATTTTACCCTTGATTTGTACTTTCGACG
AACCATTCGAGCCCGCATAACGTTTGTGGCTGATTATTAATAGTCTGTAT
CAAAGTGAAATGAGTAAGGAGTTTAAGATAATATTTTGGATTAAATCTTT
AAAAAAAAAACATGAACTCATTCCAGCCCTCCGAACATCCACCCCTTCTC
AGCATCGTAAGAGGTGCAGTCCAGGGGACTAACTATCGTCAGGTTCGAAT
GTGTACATTACTACCTCTGAGCACAAAATGGTCACATTATTTTGGATTAA
ATCTTACTCCAACATGTTCTAGCCCTAGGCTCTACGGCAATTACTTCTAC
CTCTAATAACTCTATAGAGGTAGACTACATGTACTGCATCTGCTATACGG
AGCTCACCTGAAGAATCAATGTCACGCTCTACCGGCCGCGACCCGTCTGC
AGCGAGGAAGGCGCATTTTTGATCGAGAGGACGCTGCATTACCGCGAGAT
AAGGCTCAAAGGTAGCCAAGATTTGAGGGATAATATAGAGGAGCTCAAAT
TGAAGCTGCTAAACCAGCAAGAGGACATGAACAAGGATTTTGAAGCCAAG
GTTAGGAGAGGGGGGCAAGAACAGGAACGTGCGGTTTACACACACGAGGA
TAAGTTTGTCGAGTAGACCCCGTGCTGTACATTAGTTCACATTTAGGTGC
ACCTTGGGATGGCTGCTCTCTTAAGTACAGCTCTGCTGCTAGTCAGTCTT
CTGTTGCATCCCATCACATCAAAAGGATATAATTATCCTAATTACAGTAC
CTGTTATATTCCTAATTACAGTACCTTTCGCCATCTAACCGTGACTCAAT
TAATCTCGGCAAAACTACGACGCTGAATCAGTAGGCTGGCTAGACTGGAC
AAATCCACGAGACAGGGCGTTTCAAGATGCCACGACACGACAATTACATG
CAGACAGGTCATGTCGAGGCGAAATCCTAGGTTACAGCTCTTGCACCCGG
TGGATCTCCACGCCCACCGTCAAACAAAAAACACAGTGTCCCTTGTTCCA
GATTGGGTTCCCCTCTCCGCGTTCATGCAGTTGGTGGCCGTTCGAGAGGA
GATGTGGTCTCAGGCAGCAAGGGATCGGGATGTACTGGAAACTGGGCTAG
AGTTGAAACAGGAGGCGGAGCGAGAGAAAATGATGGAGGAAGCGAAGCAA
CGCGCTAACGAGATTGTGGAAGAGGTATTGCTTCCGTTTCGCCAGTGACT
TGTTTCCGTGAGTACTGGCGTTGAGGCTGGAAGGTAGGACGAGTTATGAA
CGATCTACGAGGTCAGCATTTCCACGTACCGTGTGTACCGGTATTACTTT
TGTATTTGTTATACCCCAGAGGCTAAAATCGCCAGCTCGAATATAGAAAA
AGATTGTGCGCGCACGTCTGACGTACGATGACGTAGTAGGCCTCGTGGTG
GGAATATGACGTGATGCACCAGGTGAAGGCCAAGATAACGGCAGAGGCAG
AGCGAGACAGGGAGTTGTACGCGCAGCGGGCAGCATTAGCAGAAGAGGGA
CAAGAACTCGCCCGCGAGGATCGAAAACGATTACAGGTAGGTGTGCGTGC
GGGAGGGACAGTCTGATGCGCAGTCGGTCAACAGTCTGACCTGAGCTTCC
CGAAGACATGAACCACGTTCATCGGGTATGGCAGGACCAAAAACGCGTCG
GATCGAAGAAAATATTTCTTTCCGCGAGTGATGAATCGAATTACAGTAGC
CGCGCCCGCAACAGAGGCTGGTCATTTTGCGGCAGAGTACCGGGCGTACA
ATTTTTATTAAGGTGCAATATATTTTTACGCCAAATTTGTTTTTTCTTGT
TTTGTTTTACGCCGGACAGACGGCGAAGGAGGAGCTGGAGAGACAGCTCC
AGGAGACCATCGAGATGGAAGACAGATTCCGCAAGAAAATTATTCGAAAG
TTCAAGGCCAGGTACTGCTGCTTGTGTACTTATCACTTAAAATGAATTAC
TTCCAGATCACAAATATGTTTACTGGGTCAACTGGAATGTATGCAAGTGT
TCCCCGTACCTCATTTTCTCCAACGCTAGCGACTATTCCAATACGATGCA
GACGTATTGGCGCTTATAGGGGCAATGACTTCAAACGGGATTTCCCCCCC
GCGTATATAACTCTCATTAATCGCGCATACGCTGTGATTGGAGTTAACTT
CAATCGTGTAATAAGCGAAGTGTTGCACGTTGCTCTCGCTCAACCGGGTG
CTCCCACGGCAACACTTTGGCAGGGAGAACACCCTTCGACAAAACTTTGA
AGCTCAGCTCCGGGAGGCCAGGGCGGGGGCCATGGGAGGCGCTGCAAGAC
GCCGACAATCGGCAAAAAACGACCTGCAGTCGGCCTCGTCTAGTAGTTCC
ACGCCGGAGGGGTCTCAACGAGCCGCGGTGAAGTCCCCCACGTCTAAGGC
GATATCGTCCGGCGGGGTTGGCGGCATCCCCGCAAGTACAGGCGCGACGG
CCACGCCATAACTTTGAGGCTGCGGTGGGAAATAGGCAGATATAGGCGTT
TGTTTTCGATAAGCGGTTAGATGGGGGAGCGGTTCCCGCTCGAGTACATG
AATTCCAGCGAGTGGCATGCATGGCACCTTGCGGTGTAAAGCTGACAAGT
CTCGCCGACGTCCCTGGAGTAATCGTTATGCAGGGAATGAATCCACAGTT
TGTACTGAACTGAGATGATGCTTATAAGCCGAAAGGTCACTATGGTTTAT
GTGACGTCGCGTAGAGGATTGATGTAGACGAGGTCATAGATTGAAATGTC
GCTAGTCGCTAGAATCGCTTGGCGTGCCCATAGGCTTCTAGTACCAAATG
TAATGTCATGTTGCTGTAGCTTTGTTCAACCACCATCTGTGGCAGGATAT
GTCGCGACAACACGGCGTGGAGTTGCACGTTGCGACACATACGATGTCGT
GTTTCCTTCGAGATTTGTGTGCTGTGGTAAGTGTACCTTTATTTTGTTAT
TTCGTGTTTCGTACGGCACATGGTCAACACGGCTGGATACTCCATATCGT
CACAAAAAGCCGGAAATTGAAATTACGCGTAACACCCATATTTCGGGAGG
ATAGGGGGAGCGTACTTACTGAAGTCAAGGGTTTCATCCTTGCTTGATCG
GCAAGGACACCCTTAAAATCGATGAGTGGAGGCGCGCCTGGTGCAACACA
TCACTAGTCTAAAATGAAATACAAGGCAGGTTAGAAAGAGCTTGAGCGCC
TGTTGCAACGCCTATATTTGATATCATGATGGGTTATTTCTAGTGATGGC
GTATCGAATATCATATAAAAACAATATGCCCTTCGATAGTCGAATTTGTT
TTTAGCAGTTCCTCCATCTTCCTCATCTTCGGAAAGGGCATTTTCTGCTG
CGGGCAATATTGTGACAAAGAAACGTAGCAGACTCGGAGATGATACTGTT
GACGCTCTCGTGTTCATGTACGATTCACATGGTTTTGCATAGTCAAGCGG
GCTACCTACCAAGTATCTCTACAAAATCCGATAGACAATTTTGCTATCGA
TTATCTTGTTCACGAAGAAAAGTTTGTACTATGCATACATAAATATTTCC
ATAGGGGTTTATTTTTCGATAAGCTCTAGAATCTTCGTCCTAAATTGGTG
CCTTTCGGATCATTTTAGAATTAAGGGTTTCCAAATGATTCGAAAATATG
AG
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Coding sequence (CDS) from alignment at H-elongata_contig8076:5664..9815+

>mRNA_H-elongata_contig8076.15730.1 ID=mRNA_H-elongata_contig8076.15730.1|Name=mRNA_H-elongata_contig8076.15730.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig8076:5664..9815+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAAGCGAACGGTTTAGCTGCTTATTTACTACTTGCGTGGGCTCC
AGCATGCGGAAGTAACTATCAAGGGCCGCCACCGTCAAGATCATTACTAG
GACGTAAAATCAAGAAGGCTGACCAGATCAGGGTGCAGGCGGCGAGAATT
AACCGTCTGGAGGAGCGCATACAGAAGCTGAGATGGTCAAAGCGAACGGT
TTAGCTGCTTATTTACTACTTGCGTGGGCTCCAGCATGCGGAAGTAACTA
TCAAGGGCCGCCACCGTCAAGATCATTACTAGGACGTAAAATCAAGAAGG
CTGACCAGATCAGGGTGCAGGCGGCGAGAATTAACCGTCTGGAGGAGCGC
ATACAGAAGCTGAGCGAGGAAGGCGCATTTTTGATCGAGAGGACGCTGCA
TTACCGCGAGATAAGGCTCAAAGGTAGCCAAGATTTGAGGGATAATATAG
AGGAGCTCAAATTGAAGCTGCTAAACCAGCAAGAGGACATGAACAAGGAT
TTTGAAGCCAAGCGAGGAAGGCGCATTTTTGATCGAGAGGACGCTGCATT
ACCGCGAGATAAGGCTCAAAGGTAGCCAAGATTTGAGGGATAATATAGAG
GAGCTCAAATTGAAGCTGCTAAACCAGCAAGAGGACATGAACAAGGATTT
TGAAGCCAAGTTGGTGGCCGTTCGAGAGGAGATGTGGTCTCAGGCAGCAA
GGGATCGGGATGTACTGGAAACTGGGCTAGAGTTGAAACAGGAGGCGGAG
CGAGAGAAAATGATGGAGGAAGCGAAGCAACGCGCTAACGAGATTGTGGA
AGAGTTGGTGGCCGTTCGAGAGGAGATGTGGTCTCAGGCAGCAAGGGATC
GGGATGTACTGGAAACTGGGCTAGAGTTGAAACAGGAGGCGGAGCGAGAG
AAAATGATGGAGGAAGCGAAGCAACGCGCTAACGAGATTGTGGAAGAGGT
GAAGGCCAAGATAACGGCAGAGGCAGAGCGAGACAGGGAGTTGTACGCGC
AGCGGGCAGCATTAGCAGAAGAGGGACAAGAACTCGCCCGCGAGGATCGA
AAACGATTACAGGTGAAGGCCAAGATAACGGCAGAGGCAGAGCGAGACAG
GGAGTTGTACGCGCAGCGGGCAGCATTAGCAGAAGAGGGACAAGAACTCG
CCCGCGAGGATCGAAAACGATTACAGACGGCGAAGGAGGAGCTGGAGAGA
CAGCTCCAGGAGACCATCGAGATGGAAGACAGATTCCGCAAGAAAATTAT
TCGAAAGTTCAAGGCCAGACGGCGAAGGAGGAGCTGGAGAGACAGCTCCA
GGAGACCATCGAGATGGAAGACAGATTCCGCAAGAAAATTATTCGAAAGT
TCAAGGCCAGGGAGAACACCCTTCGACAAAACTTTGAAGCTCAGCTCCGG
GAGGCCAGGGCGGGGGCCATGGGAGGCGCTGCAAGACGCCGACAATCGGC
AAAAAACGACCTGCAGTCGGCCTCGTCTAGTAGTTCCACGCCGGAGGGGT
CTCAACGAGCCGCGGTGAAGTCCCCCACGTCTAAGGCGATATCGTCCGGC
GGGGTTGGCGGCATCCCCGCAAGTACAGGCGCGACGGCCACGCCATAAGG
AGAACACCCTTCGACAAAACTTTGAAGCTCAGCTCCGGGAGGCCAGGGCG
GGGGCCATGGGAGGCGCTGCAAGACGCCGACAATCGGCAAAAAACGACCT
GCAGTCGGCCTCGTCTAGTAGTTCCACGCCGGAGGGGTCTCAACGAGCCG
CGGTGAAGTCCCCCACGTCTAAGGCGATATCGTCCGGCGGGGTTGGCGGC
ATCCCCGCAAGTACAGGCGCGACGGCCACGCCATAA
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