mRNA_H-elongata_contig80707.15721.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80707.15721.1
Unique NamemRNA_H-elongata_contig80707.15721.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80707.15721.1 vs. uniprot
Match: D8LF58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF58_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-14
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    7 REHPECRYSSSTSKECSSNNGKYACETILRIFKSCPNVRTEKIYEKTTTDKG 162
            ++HP+CRYS S+ KECSSNNG ++CETI R+F++CP +R E++Y+ TT D G
Sbjct:    2 KDHPDCRYSLSSQKECSSNNGSFSCETIRRVFRNCPGLRPEQVYDITTRDTG 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80707.15721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF58_ECTSI1.440e-1457.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80707contigH-elongata_contig80707:1051..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001780.1
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.606141-CDS-H-elongata_contig80707:1050..12211622931212.606141-CDS-H-elongata_contig80707:1050..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80707 1051..1221 -
1691679743.8773332-CDS-H-elongata_contig80707:1050..12211691679743.8773332-CDS-H-elongata_contig80707:1050..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80707 1051..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80707.15721.1prot_H-elongata_contig80707.15721.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80707 1051..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80707.15721.1

>prot_H-elongata_contig80707.15721.1 ID=prot_H-elongata_contig80707.15721.1|Name=mRNA_H-elongata_contig80707.15721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
DSREHPECRYSSSTSKECSSNNGKYACETILRIFKSCPNVRTEKIYEKTT
TDKGTRD
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mRNA from alignment at H-elongata_contig80707:1051..1221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80707.15721.1 ID=mRNA_H-elongata_contig80707.15721.1|Name=mRNA_H-elongata_contig80707.15721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig80707:1051..1221- (Himanthalia elongata Himel1 dioecious)
GACAGCAGGGAACACCCGGAGTGCCGCTATAGCTCGTCGACATCGAAAGA
GTGCAGCAGTAACAACGGCAAGTACGCGTGCGAGACTATCCTTCGAATCT
TCAAGAGCTGTCCCAACGTTCGTACAGAGAAAATATACGAAAAAACAACC
ACGGATAAAGGTACCCGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig80707:1051..1221-

>mRNA_H-elongata_contig80707.15721.1 ID=mRNA_H-elongata_contig80707.15721.1|Name=mRNA_H-elongata_contig80707.15721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig80707:1051..1221- (Himanthalia elongata Himel1 dioecious)
GACAGCAGGGAACACCCGGAGTGCCGCTATAGCTCGTCGACATCGAAAGA
GTGCAGCAGTAACAACGGCAAGTACGCGTGCGAGACTATCCTTCGAATCT
TCAAGAGCTGTCCCAACGTTCGTACAGAGAAAATATACGAAAAAACAACC
ACGGATAAAGGTACCCGCGATGACAGCAGGGAACACCCGGAGTGCCGCTA
TAGCTCGTCGACATCGAAAGAGTGCAGCAGTAACAACGGCAAGTACGCGT
GCGAGACTATCCTTCGAATCTTCAAGAGCTGTCCCAACGTTCGTACAGAG
AAAATATACGAAAAAACAACCACGGATAAAGGTACCCGCGAT
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