mRNA_H-elongata_contig80594.15711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80594.15711.1
Unique NamemRNA_H-elongata_contig80594.15711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80594.15711.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.640e-63
Identity = 105/148 (70.95%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:    1 LMCYQCAINAGNTILRAHYAMLAWRNGVPIERLAQIADETSTGGGASAAEDAAMALAQAASWTPTRMTATLAGLISRLYSPPAVIELLITLAVHFSFHRWTSVYVPRRYEVEVANFVKEHGDTIGCPRSPCTSEQAEWEDIAAKRRKQ 444
            LM YQCA NA N +LRAH+A +A R+GV + RL Q+ D TSTGGG SAAEDAAMA AQAASWTPTRMTA LAGLISRL+SPPAVIELLIT++V F+ HRWTSVYVPRRYE E+  FVKE+G  +G P SPCT++Q +WE+IAA++RKQ
Sbjct:  350 LMAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQVTDITSTGGGDSAAEDAAMAFAQAASWTPTRMTAALAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRRYEPEIDEFVKEYGPALGIPHSPCTADQQKWEEIAAQKRKQ 497
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BLAST of mRNA_H-elongata_contig80594.15711.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.030e-39
Identity = 81/154 (52.60%), Postives = 105/154 (68.18%), Query Frame = 1 
Query:    1 LMCYQCAINAGNTILRAHYAMLAWRNGVPIERLAQIADETSTGGGASAAED-------AAMALAQAASWTPTRMTATLAGLISRLYSPPAVIELLITLAVHFSFHRWTSVYVPRRYEVEVANFVKEHGDTIGC-PRSPCTSEQAEWEDIAAKRR 438
            LMCY CA NAGNTILRAHYA +A RNG+PI +LA   +  S+   A AA+D       AAMALA+A S TP+ ++  L GL+ R YSP  VIEL+ T+++ F +HRWT++Y+PR YE EV  FV+EHG  +G  P  PCT +Q+ WE IA + R
Sbjct:  266 LMCYICATNAGNTILRAHYAFMAHRNGMPIRQLATATNTDSSE--AVAADDTIDAKQVAAMALAEACSGTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPREYEPEVLKFVQEHGAALGIDPERPCTKDQSTWEGIAKEAR 417
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BLAST of mRNA_H-elongata_contig80594.15711.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.520e-25
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:   25 NAGNTILRAHYAMLAWRNGVPIERLAQI-ADETSTGGGASAAEDAAMALAQAASWTPTRMTATLAGLISRLYSPPAVIELLITLAVHFSFHRWTSVYVPRRYEVEVANFVKEHGDTIGC-PRSPCTSEQAEWEDIAAKRR 438
            +A NTILRAH+A +A RNGV +  LA   A+   T GG    + AA+++A+A S T   M   L  L+ R Y+P  VIEL+ TL++     RWTS+Y+P++YE EV  FV+E+G  +   P  PCT EQ+ W ++AA+ R
Sbjct:  105 SADNTILRAHFAFMAHRNGVSVSDLANATAEGGDTDGGEDLKKAAALSMARACSGTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQYEPEVLVFVEENGSALSLDPTKPCTEEQSGWRELAAEIR 244
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BLAST of mRNA_H-elongata_contig80594.15711.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.450e-13
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    4 MCYQCAINAGNTILRAHYAMLAWRNGVPIERLAQI-ADETSTGGGASAAEDAAMALAQAASWTPTRMTATLAGLISRLYSPPAVIELLITLAVHFSFHRWTSVYVPRR 324
            M Y  A +A NTILRAH+A +A RNGV +  LA   A+   T GG    + AA+++A+A   TP  +   L  L+ R Y+P  VIEL+ TL++     RWTS+Y+P++
Sbjct:  292 MGYMLATSADNTILRAHFAFMAHRNGVSVSNLASATAEGGDTDGGEDLKKAAALSMARACGGTPGPLPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80594.15711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE3.640e-6370.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN7_ECTSI2.030e-3952.60Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5G2_ECTSI5.520e-2544.29Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXG8_9PHAE1.450e-1342.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80594contigH-elongata_contig80594:660..2718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80594.15711.1prot_H-elongata_contig80594.15711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80594 663..2718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.42291-UTR-H-elongata_contig80594:659..6621622931211.42291-UTR-H-elongata_contig80594:659..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80594 660..662 +
1691679743.399396-UTR-H-elongata_contig80594:659..6621691679743.399396-UTR-H-elongata_contig80594:659..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80594 660..662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.4405358-CDS-H-elongata_contig80594:662..8411622931211.4405358-CDS-H-elongata_contig80594:662..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 663..841 +
1691679743.4087412-CDS-H-elongata_contig80594:662..8411691679743.4087412-CDS-H-elongata_contig80594:662..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 663..841 +
1622931211.4782763-CDS-H-elongata_contig80594:1689..18301622931211.4782763-CDS-H-elongata_contig80594:1689..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 1690..1830 +
1691679743.417214-CDS-H-elongata_contig80594:1689..18301691679743.417214-CDS-H-elongata_contig80594:1689..1830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 1690..1830 +
1622931211.4958816-CDS-H-elongata_contig80594:2594..27181622931211.4958816-CDS-H-elongata_contig80594:2594..2718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 2595..2718 +
1691679743.4266324-CDS-H-elongata_contig80594:2594..27181691679743.4266324-CDS-H-elongata_contig80594:2594..2718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80594 2595..2718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80594.15711.1

>prot_H-elongata_contig80594.15711.1 ID=prot_H-elongata_contig80594.15711.1|Name=mRNA_H-elongata_contig80594.15711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MCYQCAINAGNTILRAHYAMLAWRNGVPIERLAQIADETSTGGGASAAED
AAMALAQAASWTPTRMTATLAGLISRLYSPPAVIELLITLAVHFSFHRWT
SVYVPRRYEVEVANFVKEHGDTIGCPRSPCTSEQAEWEDIAAKRRKQ*
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mRNA from alignment at H-elongata_contig80594:660..2718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80594.15711.1 ID=mRNA_H-elongata_contig80594.15711.1|Name=mRNA_H-elongata_contig80594.15711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2059bp|location=Sequence derived from alignment at H-elongata_contig80594:660..2718+ (Himanthalia elongata Himel1 dioecious)
CTCATGTGCTACCAGTGCGCCATCAACGCTGGGAATACGATCCTGCGCGC
CCACTACGCCATGCTGGCCTGGAGGAACGGGGTGCCCATCGAGCGGCTAG
CGCAGATCGCCGACGAGACGTCTACAGGGGGAGGAGCAAGCGCGGCGGAG
GACGCGGCGATGGCCTTGGCTCAGGCTGCAAGGTGTGTGTAAAAGAGAGG
CGTACAATATTTGGTCCATGGGGTTACCTGAAAAGGCTGCACTCGTTGCT
TAACCTATCTCAAGGACTGCTGGCTCCGTAGCGTAGGATTCTCGGTGGTA
GTAAACACCATCGGTACGCAATTGCGTGAGATGATGAAAACGGGGTTAGC
TCGATGGCGGTTGACTGTAAAGATGGGCGCCGTCGCAGAAACCAAGAGGA
TTGAGAGGATCACTAGAGTAAGCACCAGATCCATCCTGGGTTGAGATAAT
GAGCAGGCTGACACGGGACGGGACTGACGAACCCGTCTCGCGAGACCAAC
TGCTCAGGCGCGAACGGGGACAGGGAAACGTTTGTAGTGCCTATTTAGCT
TAGCTGACCACAAGCATGAGGCAACCAAATCCGATTGATGGTTAAGTGTA
AATGTGTGCTTTGTGTGTGTGTGAGACAATGTAATTGAATGCTCGTCAAG
ACGAGAGGACTGGAAGTAGGGGGTGGAAGAACCATGCTTTCGCTGACGCA
CCCGGCACAGGACGGCACAGGAAGGGTCATAGAAAAAATGAAAGAGTAGT
TGCTGGGTGAACATGTTTAAAAAATTAGGCGAAATTAGGCGGGACTGTAG
ATTGGGAGCCAAGTTGTTAATGTTTTAGCAATAGGTGCCTTTCGGGTTTT
CCTGGACCGGCCTTTTTCTGCCCTGATGGAATCGTGCATCGCTGCGCTAC
CGCAAACTCACTGAGATAGGTCGTCCTCATACCTTTTTTTTAGAACCCCC
TCTCCCCTTCTTTGTACTGGTACTCTCGAGCCCTGACGTCCGCCACCCCC
TCCCCTCCGCCGCCACTCATCGTGCAACAGCTGGACGCCAACCCGCATGA
CGGCAACCCTCGCCGGGCTGATTTCGCGTCTTTACTCCCCGCCAGCGGTT
ATCGAGCTGCTGATCACTCTCGCCGTTCACTTTTCTTTTCATCGCTGGAC
CTCAGTCTACGTGCCCCGGAGGTGAGATATGGTGCCGTTCCGTCTTTTGA
GAACGGACCACGGCAACGAGGCGAGATATGGTGCCGTGTTCTTATCAAGT
GGTTGGTCTGTATTGTGAGGGTGGGGCGGGGTGAGGTTGCGTTATATAGG
AATGACAACGTCTCCTCTTTGAGAGAGGACGACGGAACAGCAGCATTGTT
CCTTCATGGTGCTGCTTTTGCCAACGGTGACACAAGACATTTTTCGTTTC
GCCATTCTTCCTGCCTTACTGTGTTGTATTCCTTTTTCGCTGTCTCTGGC
GAAGATAGCGCTACTACCTTCGTTTGCCTTTTCAGCGCTTTCAAAACAAA
AGCGTTTTTGCCACACGTGACCCACAATATTTAATATTTCGTCACAGTAT
TAATTTGATAAAAGTTACAATATTTCATCATAGTCTTATTTGATAAAAGT
TACCATATTTCGTCATAGTCTTAATTTGATCAAAGTTACAATATTTCATC
GTAGTCTTAATTTGATAAAAGTTACAATATTCTTGTGTGGGAAAAGAAGA
GAAACCGGGGCTACGAATAAAAAGCGCTTTCAGGTCTTAGCCACAATGGT
CAACGTACATTTTGTTTTCCCTCCCTCTTCTAGTTTAGTTACCACATATA
GCATACTCTAAATACCCTCCCTCCGTCCTCCAATCCCCCCAATAACGACC
CCCCATGGACAGGGTCATCCGAAGTCTGACGCGTGTCTAACGCCGAAATC
TGACGCCACGTTTTCCCCCTTGCACCGCCGACCAGGTACGAGGTGGAAGT
GGCGAACTTCGTGAAGGAGCACGGGGATACGATCGGGTGTCCCCGCTCCC
CTTGCACCTCCGAGCAGGCCGAATGGGAGGACATCGCGGCCAAGAGGCGC
AAACAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig80594:660..2718+

>mRNA_H-elongata_contig80594.15711.1 ID=mRNA_H-elongata_contig80594.15711.1|Name=mRNA_H-elongata_contig80594.15711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig80594:660..2718+ (Himanthalia elongata Himel1 dioecious)
ATGTGCTACCAGTGCGCCATCAACGCTGGGAATACGATCCTGCGCGCCCA
CTACGCCATGCTGGCCTGGAGGAACGGGGTGCCCATCGAGCGGCTAGCGC
AGATCGCCGACGAGACGTCTACAGGGGGAGGAGCAAGCGCGGCGGAGGAC
GCGGCGATGGCCTTGGCTCAGGCTGCAAGATGTGCTACCAGTGCGCCATC
AACGCTGGGAATACGATCCTGCGCGCCCACTACGCCATGCTGGCCTGGAG
GAACGGGGTGCCCATCGAGCGGCTAGCGCAGATCGCCGACGAGACGTCTA
CAGGGGGAGGAGCAAGCGCGGCGGAGGACGCGGCGATGGCCTTGGCTCAG
GCTGCAAGCTGGACGCCAACCCGCATGACGGCAACCCTCGCCGGGCTGAT
TTCGCGTCTTTACTCCCCGCCAGCGGTTATCGAGCTGCTGATCACTCTCG
CCGTTCACTTTTCTTTTCATCGCTGGACCTCAGTCTACGTGCCCCGGAGC
TGGACGCCAACCCGCATGACGGCAACCCTCGCCGGGCTGATTTCGCGTCT
TTACTCCCCGCCAGCGGTTATCGAGCTGCTGATCACTCTCGCCGTTCACT
TTTCTTTTCATCGCTGGACCTCAGTCTACGTGCCCCGGAGGTACGAGGTG
GAAGTGGCGAACTTCGTGAAGGAGCACGGGGATACGATCGGGTGTCCCCG
CTCCCCTTGCACCTCCGAGCAGGCCGAATGGGAGGACATCGCGGCCAAGA
GGCGCAAACAATGAGTACGAGGTGGAAGTGGCGAACTTCGTGAAGGAGCA
CGGGGATACGATCGGGTGTCCCCGCTCCCCTTGCACCTCCGAGCAGGCCG
AATGGGAGGACATCGCGGCCAAGAGGCGCAAACAATGA
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