mRNA_H-elongata_contig80537.15705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80537.15705.1
Unique NamemRNA_H-elongata_contig80537.15705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.040e-33
Identity = 83/168 (49.40%), Postives = 98/168 (58.33%), Query Frame = 1 
Query:    1 DQKLPEVYGYYGRTASPPPKARGAWSATPAPQQSDDTGQVSPEVGVIETQRD-----EKTSKGTSEENFE---ADFPVPPGMVVPSSVRQHVMMVSTARNA-----LEVLLRLKQAANEAFSFLSHEDPIHPYYIFLKSWGEARLAGEYERQQRLHAERAAQRGKKEE 465
            +++ PEVYGYYGRTASPP                                        +  KG   E FE   ADF +P G+V P++ RQH+MMV TAR A     LEVLLRLKQ ANEAFSFLSHEDP HPYY+FLKSWGE+ LA EY RQQRL AERA  R ++++
Sbjct:  168 EEEEPEVYGYYGRTASPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPMKGAGGEQFEEFVADFGIPEGLVAPATFRQHMMMVGTARTAVRSPQLEVLLRLKQQANEAFSFLSHEDPAHPYYLFLKSWGESALAAEYARQQRLQAERAEARQRQDQ 335
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: D7FJ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ62_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.770e-29
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:  160 KTSKGTSEENFEADFPVPPGMVVPSSVRQHVMMVSTARNA-----LEVLLRLKQAANEAFSFLSHEDPIHPYYIFLKSWGEARLAGEYERQQRLHAERA 441
            K + G   E F ADF +P  +V P++ RQH+MMV TAR A     LEVLLRLKQ ANEAFSFLS EDP+HPYY+FLKSWGE+ LA EY RQQRL AERA
Sbjct:  226 KGAGGDQFEEFVADFGIPEELVAPATFRQHMMMVGTARTAVRSPQLEVLLRLKQQANEAFSFLSDEDPVHPYYLFLKSWGESALAAEYARQQRLQAERA 324
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: UPI001F502562 (splicing factor, suppressor of white-apricot homolog isoform X1 n=5 Tax=Schistocerca TaxID=7008 RepID=UPI001F502562)

HSP 1 Score: 61.6 bits (148), Expect = 7.190e-8
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  148 QRDEKTSKGTSEENFEADFPVPPG------MVVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYYIFL 372
            Q+DE TSK  +    +  F VPPG      MVVP +V+Q+ ++  TA         +E+LL++KQA N+ FSFLS +DP+H YY  L
Sbjct:  152 QQDEATSKQETAAEEDEVFIVPPGLDIPVGMVVPETVKQNAIIEKTAHFISRQGAQMEILLKMKQANNQQFSFLSFDDPLHAYYRHL 238
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A8J2JL12_9HEXA (Hypothetical protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JL12_9HEXA)

HSP 1 Score: 57.4 bits (137), Expect = 2.070e-6
Identity = 24/65 (36.92%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  196 ADFPVPPGMVVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYYIFL 372
            A+  +PP +++P++++ H ++  TA+        +E++L+ KQ+ N  F FLSH DP++PYY FL
Sbjct:  206 AELMIPPDILLPATMKSHAIIEKTAKFISSQGTQMEIILKTKQSKNPLFDFLSHNDPLNPYYKFL 270
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A250X0J8_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0J8_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 5.120e-6
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:  163 TSKGTSEEN--FEADFPVPPGM--VVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYY 363
            TSK   EE+  F   F VP  +  VVPSS +QH ++V TAR        +EVLLR+KQA N AF FL     +HPYY
Sbjct:  227 TSKHDGEESRAFRPPFAVPTHLSDVVPSSEKQHKILVETARFVRTNGGQVEVLLRVKQAKNPAFKFLEPGHALHPYY 303
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A3R7MHY1_PENVA (Uncharacterized protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7MHY1_PENVA)

HSP 1 Score: 55.8 bits (133), Expect = 6.730e-6
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  199 DFPVPPGMVVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYYIFLKS 378
            D  VPPGM+VP +V+Q+ ++V T++        +E++++ KQA N  FSFLS ++P++ YY  + S
Sbjct:  200 DLNVPPGMIVPETVKQNKIIVKTSKFIVTQGGQMEIVIKTKQAGNPMFSFLSFDNPLNAYYKHMVS 265
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A4D9CNQ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNQ8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-5
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  187 NFEADFPVPPGMVVPSSVRQHVMMVSTARNA-----LEVLLRLKQAANEAFSFLSHEDPIHPYYIFLK 375
            +F   F VPP + +PS+ ++H ++  T+R A     LE++L++KQA N AFSFL     +H YY+F++
Sbjct:  241 DFTPSFSVPPSVCLPSTWQEHRLIGMTSRRAREDPQLEIMLKVKQADNPAFSFLYPGGRLHEYYVFMR 308
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A6H5GRB5_9HEMI (Uncharacterized protein n=3 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GRB5_9HEMI)

HSP 1 Score: 55.1 bits (131), Expect = 1.290e-5
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  196 ADFPVPPGMVVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYYIFLK 375
            A+  +PP M  P +V+ + ++  TA       + +E+L+++KQ  N+ F FLSH+DP+H YY+ LK
Sbjct:  757 AELQLPPDMDAPKTVKHNAIIERTALFLAQQGSQMEILMKVKQQGNKNFDFLSHQDPLHRYYLHLK 822
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A2P2I731_9CRUS (Protein suppressor of white apricot-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I731_9CRUS)

HSP 1 Score: 54.3 bits (129), Expect = 2.210e-5
Identity = 24/56 (42.86%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  214 PGMVVPSSVRQHVMMVSTAR------NALEVLLRLKQAANEAFSFLSHEDPIHPYY 363
            PGM VP+S++QH ++V TA+      N +E++L+ KQ++N  F FLS ++ ++PYY
Sbjct:  194 PGMTVPTSIKQHKVIVKTAKFIAKQGNQMEIVLKTKQSSNPLFGFLSFDNVLNPYY 249
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BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Match: A0A7S3Y7Q6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7Q6_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 6.980e-5
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  202 FPVPPGMVVPSSVRQHVMMVSTARNA-----LEVLLRLKQAANEAFSFLSHEDPIHPYYIFLKS 378
            FPVP G+ +P   R   +++ TAR       LE+LL++KQA N  F+FL+  DP+HPYY   ++
Sbjct:   35 FPVPEGVELPPDDRTDQIILVTARKIRKNPQLEILLKVKQAYNPDFAFLTPGDPLHPYYCHCRA 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80537.15705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L7V8_9PHAE1.040e-3349.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ62_ECTSI3.770e-2965.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001F5025627.190e-842.53splicing factor, suppressor of white-apricot homol... [more]
A0A8J2JL12_9HEXA2.070e-636.92Hypothetical protein (Fragment) n=1 Tax=Allacma fu... [more]
A0A250X0J8_9CHLO5.120e-648.05Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A3R7MHY1_PENVA6.730e-639.39Uncharacterized protein n=1 Tax=Penaeus vannamei T... [more]
A0A4D9CNQ8_9STRA1.220e-539.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6H5GRB5_9HEMI1.290e-537.88Uncharacterized protein n=3 Tax=Nesidiocoris tenui... [more]
A0A2P2I731_9CRUS2.210e-542.86Protein suppressor of white apricot-like (Fragment... [more]
A0A7S3Y7Q6_HETAK6.980e-542.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80537contigH-elongata_contig80537:1332..2815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue4e-26
Seed eggNOG ortholog2880.D7FJ62
Preferred nameSFSWAP
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000395,GO:0000398,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0033119,GO:0034622,GO:0034641,GO:0043170,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0045292,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903311,GO:1903312
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1847@1,KOG1847@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.897112-CDS-H-elongata_contig80537:1331..16101622931210.897112-CDS-H-elongata_contig80537:1331..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80537 1332..1610 +
1691679743.163639-CDS-H-elongata_contig80537:1331..16101691679743.163639-CDS-H-elongata_contig80537:1331..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80537 1332..1610 +
1622931210.914827-CDS-H-elongata_contig80537:2563..28151622931210.914827-CDS-H-elongata_contig80537:2563..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80537 2564..2815 +
1691679743.1780293-CDS-H-elongata_contig80537:2563..28151691679743.1780293-CDS-H-elongata_contig80537:2563..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80537 2564..2815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80537.15705.1prot_H-elongata_contig80537.15705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80537 1332..2815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80537.15705.1

>prot_H-elongata_contig80537.15705.1 ID=prot_H-elongata_contig80537.15705.1|Name=mRNA_H-elongata_contig80537.15705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
DQKLPEVYGYYGRTASPPPKARGAWSATPAPQQSDDTGQVSPEVGVIETQ
RDEKTSKGTSEENFEADFPVPPGMVVPSSVRQHVMMVSTARNALEVLLRL
KQAANEAFSFLSHEDPIHPYYIFLKSWGEARLAGEYERQQRLHAERAAQR
GKKEEEDKERAEAEAAAAADATVKGS*
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mRNA from alignment at H-elongata_contig80537:1332..2815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80537.15705.1 ID=mRNA_H-elongata_contig80537.15705.1|Name=mRNA_H-elongata_contig80537.15705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1484bp|location=Sequence derived from alignment at H-elongata_contig80537:1332..2815+ (Himanthalia elongata Himel1 dioecious)
GACCAGAAACTTCCGGAAGTGTACGGCTACTACGGAAGAACGGCCAGCCC
CCCGCCAAAGGCACGGGGCGCGTGGTCGGCGACACCAGCACCCCAGCAAT
CCGACGACACCGGCCAAGTTTCGCCAGAAGTGGGAGTTATTGAAACGCAA
CGAGACGAGAAGACGTCAAAGGGGACAAGTGAAGAGAATTTCGAGGCTGA
TTTTCCGGTGCCGCCGGGGATGGTTGTTCCGTCAAGCGTCCGGCAGCACG
TGATGATGGTCAGCACAGCCAGGAACGCCGTACGCTCGCCGCAGGCAAGA
AGAAAATAATGGGGTCACTTCCTGGACCTTAACTGGCCCAGCACTTGGAA
ACGTTTGAAGGTTTTGTACAGAGTATATCGCACATGGAACACGGCACCGG
CAAGTGATGTGTTTTTGCGCTCTTTGCCTGCTTGTGTATGTGTGTACCTA
TGTATGTATGTGTACATGCATAGCTTCCGCTGGCTTTGCCCTTACGACGG
AAGCTCTCTAAAATGATCCTTGGTATGATGTAACTGTAGCCGTGGGTAAC
TGTAGCCGGGATAGACTACATCCCATTATAGTATAGTAATGTTTTTGGAC
GAAAATCGCTATCGCACCGGGGATGGTTTGTGCTTTCAACACCCACCCCC
CCCCCCCCCAAGCCCCCCCCAACTGGGGATGGTATGCCCGGGGGGTAGGG
TATACTTGTCACCCACCGGATCGTTCTTTATGTTGAGCTAATTGGCTAAT
GGTCTAATGGGGATTATAGGGCGGTATCTCTACACTATTAGAGGGTGGCA
GTAGTAGGACTTGACTTGACTTGAGGTGATGGTGCTCGGCCGATGTTTTC
GGAGAAGGCAGCAATATATCCGCGTACTGTTCTCCGTAGCCGGGGCAGAT
GGGGGACTGGCAAAGCATCTATATTCCTATTGCAATACCTATATACATAT
TTCAATATCTATACACCTATTGCAGTACCTCTTTACATATTTCAATACCT
TTATACACATTACAATACCTTTATACCTTTTGCAACACCTACATAGCTAT
TGCATCTGCTTTTCGCTCGGTTCCGTTTGGTTTCGCTTCCGTTCCGTTTT
GCCTTTCCGTTAAGTTTACAGAGTTGTGACTTGTGATCCTTCACGAGCTC
GCCTTATTTCTCGTGTACTCCCGACGGCAACCCCTAACCAATTGCCAATC
ACCGATCGCAACGAAACTATCTTCGCACACAGCTGGAGGTTTTACTGAGG
CTAAAGCAGGCGGCCAATGAGGCGTTTTCCTTCCTCTCCCACGAAGACCC
CATCCACCCTTACTACATTTTCCTGAAGTCTTGGGGCGAGGCTAGACTGG
CTGGGGAGTACGAGCGACAGCAGCGGCTTCATGCAGAAAGAGCCGCACAG
AGGGGAAAAAAGGAGGAAGAAGATAAGGAGAGAGCAGAGGCGGAAGCGGC
AGCGGCAGCAGATGCGACGGTCAAAGGTTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80537:1332..2815+

>mRNA_H-elongata_contig80537.15705.1 ID=mRNA_H-elongata_contig80537.15705.1|Name=mRNA_H-elongata_contig80537.15705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig80537:1332..2815+ (Himanthalia elongata Himel1 dioecious)
GACCAGAAACTTCCGGAAGTGTACGGCTACTACGGAAGAACGGCCAGCCC
CCCGCCAAAGGCACGGGGCGCGTGGTCGGCGACACCAGCACCCCAGCAAT
CCGACGACACCGGCCAAGTTTCGCCAGAAGTGGGAGTTATTGAAACGCAA
CGAGACGAGAAGACGTCAAAGGGGACAAGTGAAGAGAATTTCGAGGCTGA
TTTTCCGGTGCCGCCGGGGATGGTTGTTCCGTCAAGCGTCCGGCAGCACG
TGATGATGGTCAGCACAGCCAGGAACGCCGACCAGAAACTTCCGGAAGTG
TACGGCTACTACGGAAGAACGGCCAGCCCCCCGCCAAAGGCACGGGGCGC
GTGGTCGGCGACACCAGCACCCCAGCAATCCGACGACACCGGCCAAGTTT
CGCCAGAAGTGGGAGTTATTGAAACGCAACGAGACGAGAAGACGTCAAAG
GGGACAAGTGAAGAGAATTTCGAGGCTGATTTTCCGGTGCCGCCGGGGAT
GGTTGTTCCGTCAAGCGTCCGGCAGCACGTGATGATGGTCAGCACAGCCA
GGAACGCCCTGGAGGTTTTACTGAGGCTAAAGCAGGCGGCCAATGAGGCG
TTTTCCTTCCTCTCCCACGAAGACCCCATCCACCCTTACTACATTTTCCT
GAAGTCTTGGGGCGAGGCTAGACTGGCTGGGGAGTACGAGCGACAGCAGC
GGCTTCATGCAGAAAGAGCCGCACAGAGGGGAAAAAAGGAGGAAGAAGAT
AAGGAGAGAGCAGAGGCGGAAGCGGCAGCGGCAGCAGATGCGACGGTCAA
AGGTTCGTGACTGGAGGTTTTACTGAGGCTAAAGCAGGCGGCCAATGAGG
CGTTTTCCTTCCTCTCCCACGAAGACCCCATCCACCCTTACTACATTTTC
CTGAAGTCTTGGGGCGAGGCTAGACTGGCTGGGGAGTACGAGCGACAGCA
GCGGCTTCATGCAGAAAGAGCCGCACAGAGGGGAAAAAAGGAGGAAGAAG
ATAAGGAGAGAGCAGAGGCGGAAGCGGCAGCGGCAGCAGATGCGACGGTC
AAAGGTTCGTGA
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