mRNA_H-elongata_contig80529.15703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80529.15703.1
Unique NamemRNA_H-elongata_contig80529.15703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.410e-34
Identity = 95/217 (43.78%), Postives = 117/217 (53.92%), Query Frame = 1 
Query:  607 YARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLSWSSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASLPSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTEGLQALMRLGIFLDSHEVQENTVDVLSSAGYL 1257
            YARASREF  LG+C TP EML+ ++ G+TLL  EAAR SGSD P+DAD+LLPLLVH L  A+LPRVHEAL+F+RNF+G    G++ YYVT +EAAVSFVL W     G+  D       G                                                           ++     G +AL+RLGIFL+ HEVQE+TVDVLSSAG+L
Sbjct:  921 YARASREFERLGECATPVEMLDVIKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDW-----GAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDK-----GREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
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BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.410e-32
Identity = 89/203 (43.84%), Postives = 111/203 (54.68%), Query Frame = 1 
Query:  664 MLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLSW--SSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASLPSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTE---GLQALMRLGIFLDSHEVQENTVDVLSSAGYL 1257
            ML+ V+ G+TLL  EAAR SGSD P+DAD+LLPLLVH L  A+LPRVHEALNF+RNF+G    G++ YYVT +EAAVSFVL W  ++D      D             + ++GS A               A      R +  G                        E   G +AL+RLGIFL+ HEVQE+TVDVLSSAG+L
Sbjct:    1 MLDVVKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAE--------------AGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
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BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: A0A6U0URX0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URX0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.380e-9
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:  544 GNVAREEGTKGIEIKAVTDRPYARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVL 906
            G      G K +E      RP+ R SR    L  C+TP++M   +   + LL  EA   SG    + ADTL PL++  ++ A++P +H  L+F   F     RG+ AYY T V A V +V+
Sbjct:  283 GPATEASGAKAME------RPFWRTSRYLSNLCACVTPSDMERVLLRAMRLLHGEAVLISGRRTALSADTLFPLILFAVINAEIPPMHSVLHFWNTFSRGDGRGEGAYYRTCVGAVVDYVM 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JK77_9PHAE1.410e-3443.78VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS46_ECTSI1.410e-3243.84VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U0URX0_9STRA1.380e-934.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80529contigH-elongata_contig80529:108..2887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue6.4e-30
Seed eggNOG ortholog2880.D7FS46
EggNOG free text desc.Vacuolar sorting protein 9 (VPS9) domain
EggNOG OGs29NWZ@1,2QTH6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar sorting protein 9
Ec32 orthologEc-16_004390.1
Exons3
Model size2268
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80529.15703.1prot_H-elongata_contig80529.15703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80529 117..1879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.720018-UTR-H-elongata_contig80529:107..1161622931210.720018-UTR-H-elongata_contig80529:107..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80529 108..116 +
1691679743.0896678-UTR-H-elongata_contig80529:107..1161691679743.0896678-UTR-H-elongata_contig80529:107..116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80529 108..116 +
1622931210.785963-UTR-H-elongata_contig80529:1879..28871622931210.785963-UTR-H-elongata_contig80529:1879..2887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80529 1880..2887 +
1691679743.134636-UTR-H-elongata_contig80529:1879..28871691679743.134636-UTR-H-elongata_contig80529:1879..2887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig80529 1880..2887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.736057-CDS-H-elongata_contig80529:116..8301622931210.736057-CDS-H-elongata_contig80529:116..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 117..830 +
1691679743.102031-CDS-H-elongata_contig80529:116..8301691679743.102031-CDS-H-elongata_contig80529:116..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 117..830 +
1622931210.7508287-CDS-H-elongata_contig80529:1003..11611622931210.7508287-CDS-H-elongata_contig80529:1003..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 1004..1161 +
1691679743.110916-CDS-H-elongata_contig80529:1003..11611691679743.110916-CDS-H-elongata_contig80529:1003..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 1004..1161 +
1622931210.7692454-CDS-H-elongata_contig80529:1500..18791622931210.7692454-CDS-H-elongata_contig80529:1500..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 1501..1879 +
1691679743.1231499-CDS-H-elongata_contig80529:1500..18791691679743.1231499-CDS-H-elongata_contig80529:1500..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80529 1501..1879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80529.15703.1

>prot_H-elongata_contig80529.15703.1 ID=prot_H-elongata_contig80529.15703.1|Name=mRNA_H-elongata_contig80529.15703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=417bp
MSTSQQSKPSLHTLSPAQAGKIRELPLLQLGIPPEYIPTFSGVAAVDEAS
DTAEVSDSVAGEERSFERPVAGGKLGDQHSRVATEESPGECEVASLRTGA
SDAAAAHEMGAIYRETPSSRSSAEIPGRQLEPTSEHDDNIAIAITVAAPH
TSARGICPRAAAEATSTVAPITHLVAVGGNVAREEGTKGIEIKAVTDRPY
ARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLL
PLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLS
WSSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASL
PSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTEGLQALMRLGIFLDSH
EVQENTVDVLSSAGYL*
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mRNA from alignment at H-elongata_contig80529:108..2887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80529.15703.1 ID=mRNA_H-elongata_contig80529.15703.1|Name=mRNA_H-elongata_contig80529.15703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2780bp|location=Sequence derived from alignment at H-elongata_contig80529:108..2887+ (Himanthalia elongata Himel1 dioecious)
GGCAGTCTGATGTCGACGAGTCAGCAATCCAAGCCTTCTCTCCATACCCT
GTCCCCTGCGCAGGCGGGAAAAATACGGGAGTTGCCTCTGTTGCAGCTGG
GGATTCCCCCGGAGTACATCCCCACATTTTCTGGTGTCGCGGCAGTCGAT
GAGGCATCAGACACGGCCGAAGTTTCTGATTCTGTTGCGGGAGAGGAACG
ATCTTTTGAACGGCCCGTCGCTGGCGGAAAACTCGGGGATCAACACAGTC
GGGTTGCGACGGAGGAGTCACCAGGAGAGTGCGAAGTTGCTTCTCTGAGG
ACTGGGGCGAGTGATGCTGCGGCGGCGCATGAAATGGGGGCCATATATCG
CGAAACGCCTTCGTCGAGGAGTTCGGCGGAAATTCCTGGTCGCCAATTAG
AGCCGACTTCGGAGCATGACGACAATATCGCTATCGCTATTACCGTTGCT
GCTCCTCACACTTCCGCCCGTGGTATATGTCCTCGTGCTGCGGCAGAAGC
AACCTCGACGGTGGCTCCCATCACTCATCTAGTGGCAGTGGGAGGAAATG
TTGCGCGGGAAGAGGGTACGAAGGGAATAGAAATAAAAGCTGTCACGGAC
AGGCCCTACGCGCGCGCTTCGCGCGAGTTTGGGCTCCTTGGAGACTGCAT
CACCCCCAACGAAATGCTCGAGACTGTGGAGACTGGAATTACGCTCCTCG
TCATAGAAGCTGCGCGTACATCGGTGCGTTTAGGTGCTGGGGAGTGTTTT
GGGTTTCTAGTACCGTGTTAGTTGTTGCGGGTTGTACCCCTGCAACCCCC
GCGGTGCTACTCACCGACGTTTTACGCTTGCACGGCAGTCGTTCTGAACA
ACGTTTCGCCTATACCTTTCCTTGCTCTTATTTCGCCACTCGCCAGGGGT
CTGATGTGCCAATGGATGCCGACACGCTCCTGCCGCTTCTGGTGCACGTC
CTGGTGCAGGCAGACCTGCCTCGAGTCCACGAAGCTTTGAACTTCATTCG
AAACTTCCGCGGGCCGTCGTTGAGGGGGCAACGGGCTTATTACGTTACTT
CCGTGTGAGTACGTCTTCTTCGCATCCACCTTATGGTGCATCGCGAGGGT
TATAGCCCGGATAAACGCTTGAATGAAGCGTAGGCACAGGCTAGTCTATC
GTCTCGATATGCTTCGCCACCGCTCTGTTAAAATGAACCTTTTCCGAAGT
AGTAGATGATATTGCAAAATCCGTTCTTCAATCCGCGATTGCGATATCGT
GTCGAAGGAGTTCTATCATACAACATACATAAGGAATAGAGTACGTTGGT
GAGAAGAGCGTTGATATCGGTACTTATTGCCGTACTCTTTACTTCCCTAT
GCTATCTGCAATATTCCATATTCCATTATTATTGCTACTGCAGAGAGGCG
GCGGTTTCGTTCGTTCTAAGCTGGAGCTCCGACGAGGGAGGGAGCGAGAC
TGACCGCAAAGTCACCGCAGCGGCGGGGTCTTTCGTAGCTCCTGAATTTA
GCGAGGGATCCAGCGCAACGCGCAAACACTGTGCGATCAACCAAGTACGC
AACCCACCCTACGCGTCGTTACCAAGTGAACCTCGAGAAGAGGAAGGAGG
CATCATTAACGGCGGTTCGGAGGATTATGCACATGGTGTACTAGATCAGG
CTAAAGAAGAGATGAGTCGAACAGAGGGGCTGCAGGCTCTCATGCGCTTG
GGCATTTTTTTGGACAGTCACGAAGTTCAAGAAAACACGGTGGACGTGTT
GTCTTCTGCGGGGTACCTCTGACTGTGTCCTTTGGTGACGAAGCCGTTCG
TAATGGTGTTGTCTATACGGTACAAAATATACTGAGTAGCTTTCATACGT
ACAAAAAATAGGGCATAGTCTACTACATCAATGCTTAGTAATTAGAAGGT
GTATGAAAACTTTAAACGCCACGAAAATACTAAAACCTTGTGCGCGAGAT
TTCACCCGCACGAATCGGGAGGTTTCGGAAGAGAACGGTGGCCTATATTC
TGGTCTGTTTTTTTTTCCAGTGAGAGTCAACGTGGAGCGGCGAAACGGGC
ATATATTGGACGGGGTGGATGCTAGCTGGTGCGCCAATTTCACAGCTCAA
AGACTTTGTGGTGATGGAACTCGGTGCACTTTTCCCCCTTTGTTTCCTGC
TTGACGTTACCTTTTTGAGAAATCCGGGTTTTGTGGATGAACTTATCGAA
GTGTGATTTCGCTTTGTTTCGGAGAGCGCATATTCGATGCAGACTAGCGA
CGTTTGATTATCGTTTGACATCGGTGCGGTCTTAATATATGTTGTGTGCC
TTGTCGGCGTTTAGCCTCTCGATAGCACTTTATTTCTCGTTTCTCTTTTA
TTTCAGATAATGCTTTGGTATAAAAAAGCAAACTAACGCGGGACAGGACG
GCTGAACCGGTCTCGCGAGCCGAAATTCTTGGGCGCGAACGGCGACAGGG
ATAACCCCTAGGGAACTCATCTGTTTTTTACGTACTAAATTTATAATAAA
ACTTGAAATCCAGTCCCAAAAGGGTTAAGCTGACCACGAGCAGGATTGGT
TAATTGGTTGACCAAACACATTGAACATCACATCAGATGTTATTCAGATC
CTGGAACATTATTTTTCGTTTTTGTTGTTTTCCTCTGTTCCATAATATAA
GCTCGCTTTGGAATTTCCATAATATAAGCTCGATTCAAGTAGGGTTGAAT
TTGTTTTTGAATTGAATTTGATTGAATTTGATTGAATTCTCACATAAGCT
GATGTCAAAATCCAGCCCGTGGTCACAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig80529:108..2887+

>mRNA_H-elongata_contig80529.15703.1 ID=mRNA_H-elongata_contig80529.15703.1|Name=mRNA_H-elongata_contig80529.15703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2502bp|location=Sequence derived from alignment at H-elongata_contig80529:108..2887+ (Himanthalia elongata Himel1 dioecious)
ATGTCGACGAGTCAGCAATCCAAGCCTTCTCTCCATACCCTGTCCCCTGC
GCAGGCGGGAAAAATACGGGAGTTGCCTCTGTTGCAGCTGGGGATTCCCC
CGGAGTACATCCCCACATTTTCTGGTGTCGCGGCAGTCGATGAGGCATCA
GACACGGCCGAAGTTTCTGATTCTGTTGCGGGAGAGGAACGATCTTTTGA
ACGGCCCGTCGCTGGCGGAAAACTCGGGGATCAACACAGTCGGGTTGCGA
CGGAGGAGTCACCAGGAGAGTGCGAAGTTGCTTCTCTGAGGACTGGGGCG
AGTGATGCTGCGGCGGCGCATGAAATGGGGGCCATATATCGCGAAACGCC
TTCGTCGAGGAGTTCGGCGGAAATTCCTGGTCGCCAATTAGAGCCGACTT
CGGAGCATGACGACAATATCGCTATCGCTATTACCGTTGCTGCTCCTCAC
ACTTCCGCCCGTGGTATATGTCCTCGTGCTGCGGCAGAAGCAACCTCGAC
GGTGGCTCCCATCACTCATCTAGTGGCAGTGGGAGGAAATGTTGCGCGGG
AAGAGGGTACGAAGGGAATAGAAATAAAAGCTGTCACGGACAGGCCCTAC
GCGCGCGCTTCGCGCGAGTTTGGGCTCCTTGGAGACTGCATCACCCCCAA
CGAAATGCTCGAGACTGTGGAGACTGGAATTACGCTCCTCGTCATAGAAG
CTGCGCGTACATCGATGTCGACGAGTCAGCAATCCAAGCCTTCTCTCCAT
ACCCTGTCCCCTGCGCAGGCGGGAAAAATACGGGAGTTGCCTCTGTTGCA
GCTGGGGATTCCCCCGGAGTACATCCCCACATTTTCTGGTGTCGCGGCAG
TCGATGAGGCATCAGACACGGCCGAAGTTTCTGATTCTGTTGCGGGAGAG
GAACGATCTTTTGAACGGCCCGTCGCTGGCGGAAAACTCGGGGATCAACA
CAGTCGGGTTGCGACGGAGGAGTCACCAGGAGAGTGCGAAGTTGCTTCTC
TGAGGACTGGGGCGAGTGATGCTGCGGCGGCGCATGAAATGGGGGCCATA
TATCGCGAAACGCCTTCGTCGAGGAGTTCGGCGGAAATTCCTGGTCGCCA
ATTAGAGCCGACTTCGGAGCATGACGACAATATCGCTATCGCTATTACCG
TTGCTGCTCCTCACACTTCCGCCCGTGGTATATGTCCTCGTGCTGCGGCA
GAAGCAACCTCGACGGTGGCTCCCATCACTCATCTAGTGGCAGTGGGAGG
AAATGTTGCGCGGGAAGAGGGTACGAAGGGAATAGAAATAAAAGCTGTCA
CGGACAGGCCCTACGCGCGCGCTTCGCGCGAGTTTGGGCTCCTTGGAGAC
TGCATCACCCCCAACGAAATGCTCGAGACTGTGGAGACTGGAATTACGCT
CCTCGTCATAGAAGCTGCGCGTACATCGGGGTCTGATGTGCCAATGGATG
CCGACACGCTCCTGCCGCTTCTGGTGCACGTCCTGGTGCAGGCAGACCTG
CCTCGAGTCCACGAAGCTTTGAACTTCATTCGAAACTTCCGCGGGCCGTC
GTTGAGGGGGCAACGGGCTTATTACGTTACTTCCGTGGGTCTGATGTGCC
AATGGATGCCGACACGCTCCTGCCGCTTCTGGTGCACGTCCTGGTGCAGG
CAGACCTGCCTCGAGTCCACGAAGCTTTGAACTTCATTCGAAACTTCCGC
GGGCCGTCGTTGAGGGGGCAACGGGCTTATTACGTTACTTCCGTAGAGGC
GGCGGTTTCGTTCGTTCTAAGCTGGAGCTCCGACGAGGGAGGGAGCGAGA
CTGACCGCAAAGTCACCGCAGCGGCGGGGTCTTTCGTAGCTCCTGAATTT
AGCGAGGGATCCAGCGCAACGCGCAAACACTGTGCGATCAACCAAGTACG
CAACCCACCCTACGCGTCGTTACCAAGTGAACCTCGAGAAGAGGAAGGAG
GCATCATTAACGGCGGTTCGGAGGATTATGCACATGGTGTACTAGATCAG
GCTAAAGAAGAGATGAGTCGAACAGAGGGGCTGCAGGCTCTCATGCGCTT
GGGCATTTTTTTGGACAGTCACGAAGTTCAAGAAAACACGGTGGACGTGT
TGTCTTCTGCGGGGTACCTCTGAAGAGGCGGCGGTTTCGTTCGTTCTAAG
CTGGAGCTCCGACGAGGGAGGGAGCGAGACTGACCGCAAAGTCACCGCAG
CGGCGGGGTCTTTCGTAGCTCCTGAATTTAGCGAGGGATCCAGCGCAACG
CGCAAACACTGTGCGATCAACCAAGTACGCAACCCACCCTACGCGTCGTT
ACCAAGTGAACCTCGAGAAGAGGAAGGAGGCATCATTAACGGCGGTTCGG
AGGATTATGCACATGGTGTACTAGATCAGGCTAAAGAAGAGATGAGTCGA
ACAGAGGGGCTGCAGGCTCTCATGCGCTTGGGCATTTTTTTGGACAGTCA
CGAAGTTCAAGAAAACACGGTGGACGTGTTGTCTTCTGCGGGGTACCTCT
GA
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