prot_H-elongata_contig80529.15703.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80529.15703.1
Unique Nameprot_H-elongata_contig80529.15703.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length417
Homology
BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.100e-36
Identity = 95/217 (43.78%), Postives = 117/217 (53.92%), Query Frame = 0
Query:  200 YARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLSWSSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASLPSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTEGLQALMRLGIFLDSHEVQENTVDVLSSAGYL 416
            YARASREF  LG+C TP EML+ ++ G+TLL  EAAR SGSD P+DAD+LLPLLVH L  A+LPRVHEAL+F+RNF+G    G++ YYVT +EAAVSFVL W     G+  D       G                                                           ++     G +AL+RLGIFL+ HEVQE+TVDVLSSAG+L
Sbjct:  921 YARASREFERLGECATPVEMLDVIKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDW-----GAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDK-----GREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127          
BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 5.680e-34
Identity = 89/203 (43.84%), Postives = 111/203 (54.68%), Query Frame = 0
Query:  219 MLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLSW--SSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASLPSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTE---GLQALMRLGIFLDSHEVQENTVDVLSSAGYL 416
            ML+ V+ G+TLL  EAAR SGSD P+DAD+LLPLLVH L  A+LPRVHEALNF+RNF+G    G++ YYVT +EAAVSFVL W  ++D      D             + ++GS A               A      R +  G                        E   G +AL+RLGIFL+ HEVQE+TVDVLSSAG+L
Sbjct:    1 MLDVVKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAE--------------AGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189          
BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Match: A0A6U0URX0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URX0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.220e-10
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 0
Query:  179 GNVAREEGTKGIEIKAVTDRPYARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLLPLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVL 299
            G      G K +E      RP+ R SR    L  C+TP++M   +   + LL  EA   SG    + ADTL PL++  ++ A++P +H  L+F   F     RG+ AYY T V A V +V+
Sbjct:  283 GPATEASGAKAME------RPFWRTSRYLSNLCACVTPSDMERVLLRAMRLLHGEAVLISGRRTALSADTLFPLILFAVINAEIPPMHSVLHFWNTFSRGDGRGEGAYYRTCVGAVVDYVM 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80529.15703.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JK77_9PHAE1.100e-3643.78VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS46_ECTSI5.680e-3443.84VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U0URX0_9STRA4.220e-1034.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003123VPS9 domainSMARTSM00167vps9_2coord: 199..316
e-value: 1.7E-4
score: 18.4
IPR003123VPS9 domainPFAMPF02204VPS9coord: 202..300
e-value: 7.7E-14
score: 51.8
IPR003123VPS9 domainPROSITEPS51205VPS9coord: 171..307
score: 20.788
IPR037191VPS9 domain superfamilyGENE3D1.20.1050.80coord: 181..318
e-value: 2.6E-16
score: 61.6
IPR037191VPS9 domain superfamilySUPERFAMILY109993VPS9 domaincoord: 197..309
NoneNo IPR availablePANTHERPTHR24170FAMILY NOT NAMEDcoord: 192..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80529contigH-elongata_contig80529:117..1879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80529.15703.1mRNA_H-elongata_contig80529.15703.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80529 108..2887 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80529.15703.1 ID=prot_H-elongata_contig80529.15703.1|Name=mRNA_H-elongata_contig80529.15703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=417bp
MSTSQQSKPSLHTLSPAQAGKIRELPLLQLGIPPEYIPTFSGVAAVDEAS
DTAEVSDSVAGEERSFERPVAGGKLGDQHSRVATEESPGECEVASLRTGA
SDAAAAHEMGAIYRETPSSRSSAEIPGRQLEPTSEHDDNIAIAITVAAPH
TSARGICPRAAAEATSTVAPITHLVAVGGNVAREEGTKGIEIKAVTDRPY
ARASREFGLLGDCITPNEMLETVETGITLLVIEAARTSGSDVPMDADTLL
PLLVHVLVQADLPRVHEALNFIRNFRGPSLRGQRAYYVTSVEAAVSFVLS
WSSDEGGSETDRKVTAAAGSFVAPEFSEGSSATRKHCAINQVRNPPYASL
PSEPREEEGGIINGGSEDYAHGVLDQAKEEMSRTEGLQALMRLGIFLDSH
EVQENTVDVLSSAGYL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003123VPS9
IPR037191VPS9_dom_sf