mRNA_H-elongata_contig80277.15680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80277.15680.1
Unique NamemRNA_H-elongata_contig80277.15680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: D8LJM8_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.640e-27
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGSSFAIDS 186
            +L STIV AGV LGP+R+PLPLTGRVGYL+FT+QD DIR+TRGNRGGLF+HMRPGS+F +DS
Sbjct:  194 KLVSTIVGAGVNLGPVRVPLPLTGRVGYLEFTYQDNDIRITRGNRGGLFLHMRPGSAFPLDS 255          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A835YZD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.120e-17
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGS 168
            RL STI  AG+KLGPL +PLP  GR GYLD  + D++ RVT+GNRGG+F+H+RP S
Sbjct:  165 RLHSTITMAGIKLGPLFIPLPFKGRKGYLDMLYLDDEFRVTKGNRGGVFLHVRPNS 220          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S4D433_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D433_9EUGL)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            RL S IV AG+ LGPL++PLPL    G+L+F + D ++RVTRGNRGGLF+H+RP
Sbjct:  321 RLISDIVYAGLHLGPLKIPLPLRA-TGWLEFVYLDSELRVTRGNRGGLFVHIRP 373          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S0VW87_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW87_9CRYP)

HSP 1 Score: 67.0 bits (162), Expect = 9.300e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            R+   IV A VKL  L  LPLPL  + G+LDF + DED+RVTRGNRGGLF H+RP
Sbjct:  200 RISCDIVDASVKLWKLPTLPLPLRAKGGWLDFLYLDEDMRVTRGNRGGLFFHVRP 254          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A6S8ZJ62_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZJ62_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.780e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            R+   IV A  K   L  LPLPL  + GYLDF + DEDIR+T+GNRGGLF+H RP
Sbjct:  201 RISCDIVGASFKYWKLPTLPLPLRAKGGYLDFIYMDEDIRITKGNRGGLFVHFRP 255          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S2XN84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN84_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.860e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   52 LPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            LPLPL  + GYLDF F D+DIRVTRGNRGGLF+H RP
Sbjct:  123 LPLPLKKKGGYLDFVFMDQDIRVTRGNRGGLFVHFRP 159          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A6T8LFK0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8LFK0_HEMAN)

HSP 1 Score: 65.5 bits (158), Expect = 3.380e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            R+   IV A +KL  L  LPLPL  + G+LDF + DED+RVT+GNRGGLF H+RP
Sbjct:  198 RISCDIVDASIKLWKLPTLPLPLRAKGGWLDFLYLDEDMRVTKGNRGGLFFHVRP 252          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1DWM1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DWM1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.570e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPL-RLPLPLTGRVG-YLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            R+   IVAA +K+    R+PLP   R G YLDF + D DIR+T+GNRGGLF+H RP
Sbjct:   65 RIMCDIVAASIKIWRFPRIPLPFLRRKGGYLDFVYLDNDIRITKGNRGGLFVHFRP 120          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1VT19_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT19_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.600e-10
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
            R+   IV A  K   L R+PLPL  + GYLDF + D+D+RVT+GNRGGLF+H RP
Sbjct:  233 RISCDIVGASWKFWKLPRVPLPLRKKGGYLDFLYLDKDVRVTKGNRGGLFVHFRP 287          
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1IY75_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IY75_9EUGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.560e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGSS 171
            RL STI  AG+ +  LRLPLPL    G+L++ + D ++RVTRGNRGGLF+H+RP  +
Sbjct:  144 RLTSTIFYAGLHILCLRLPLPLRA-TGWLEYIYLDPELRVTRGNRGGLFVHIRPAKA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM8_ECTSI1.640e-2777.42PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A835YZD2_9STRA3.120e-1762.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D433_9EUGL1.070e-1261.11Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0VW87_9CRYP9.300e-1261.82Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6S8ZJ62_9STRA1.780e-1158.18Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2XN84_9STRA1.860e-1175.68Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6T8LFK0_HEMAN3.380e-1158.18Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1DWM1_9STRA6.570e-1155.36Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1VT19_9STRA1.600e-1056.36Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S1IY75_9EUGL2.560e-1054.39Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80277contigH-elongata_contig80277:48..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-17_002660.1
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931208.4448063-CDS-H-elongata_contig80277:47..1811622931208.4448063-CDS-H-elongata_contig80277:47..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80277 48..181 +
1691679742.2179322-CDS-H-elongata_contig80277:47..1811691679742.2179322-CDS-H-elongata_contig80277:47..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80277 48..181 +
1622931208.6170545-CDS-H-elongata_contig80277:569..6211622931208.6170545-CDS-H-elongata_contig80277:569..621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80277 570..621 +
1691679742.2258952-CDS-H-elongata_contig80277:569..6211691679742.2258952-CDS-H-elongata_contig80277:569..621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80277 570..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80277.15680.1prot_H-elongata_contig80277.15680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80277 48..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80277.15680.1

>prot_H-elongata_contig80277.15680.1 ID=prot_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFM
HMRPGSSFAIDS
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mRNA from alignment at H-elongata_contig80277:48..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80277.15680.1 ID=mRNA_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at H-elongata_contig80277:48..621+ (Himanthalia elongata Himel1 dioecious)
AGACTCCAGTCGACCATCGTGGCGGCGGGGGTGAAGCTGGGCCCGTTACG GCTGCCGCTACCCCTAACGGGCAGGGTAGGATATCTGGACTTCACTTTCC AAGATGAGGACATCCGGGTCACGCGGGGGAACAGGTATGTATGGTACATG TGTGTTCACTGGGCTTACTTTGTTTTCCGTCGCCCCGGCTCAACCTGCGT GAGAGTAGCTAGAAAACGAAAACAGCTTCCTGGTTTTGTTGCTAAGCCGT GTCAACAGCAAGCCAGCCTGTCGTGTTTGTGTCTTTCTCTTTAACAAAAA TGTATCCAATGATGCGGATTTTTTTCTTCTTCTTTCTTTTAACCGCCTCT AGTTCATCGCGCCCTAGGCATGTGATCGGCCACCAGTCACGTACGCAACC GGACAACGAGGAAGACATTACGTCCAATCCTACTCGCCCCGCCCCGCCTC GCTGCACCTGACCCTTTCTTCGACCAATCGTGTTTTTTGAATCCGGGGAC AAACAACACCTCCCCGCCGCAGGGGAGGGCTGTTCATGCACATGCGCCCC GGAAGCTCGTTCGCGATAGACTCA
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Coding sequence (CDS) from alignment at H-elongata_contig80277:48..621+

>mRNA_H-elongata_contig80277.15680.1 ID=mRNA_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig80277:48..621+ (Himanthalia elongata Himel1 dioecious)
AGACTCCAGTCGACCATCGTGGCGGCGGGGGTGAAGCTGGGCCCGTTACG
GCTGCCGCTACCCCTAACGGGCAGGGTAGGATATCTGGACTTCACTTTCC
AAGATGAGGACATCCGGGTCACGCGGGGGAACAGAGACTCCAGTCGACCA
TCGTGGCGGCGGGGGTGAAGCTGGGCCCGTTACGGCTGCCGCTACCCCTA
ACGGGCAGGGTAGGATATCTGGACTTCACTTTCCAAGATGAGGACATCCG
GGTCACGCGGGGGAACAGGGGAGGGCTGTTCATGCACATGCGCCCCGGAA
GCTCGTTCGCGATAGACTCAGGGAGGGCTGTTCATGCACATGCGCCCCGG
AAGCTCGTTCGCGATAGACTCA
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