mRNA_H-elongata_contig80277.15680.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: D8LJM8_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM8_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.640e-27 Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGSSFAIDS 186
+L STIV AGV LGP+R+PLPLTGRVGYL+FT+QD DIR+TRGNRGGLF+HMRPGS+F +DS
Sbjct: 194 KLVSTIVGAGVNLGPVRVPLPLTGRVGYLEFTYQDNDIRITRGNRGGLFLHMRPGSAFPLDS 255
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A835YZD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD2_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.120e-17 Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGS 168
RL STI AG+KLGPL +PLP GR GYLD + D++ RVT+GNRGG+F+H+RP S
Sbjct: 165 RLHSTITMAGIKLGPLFIPLPFKGRKGYLDMLYLDDEFRVTKGNRGGVFLHVRPNS 220
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S4D433_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D433_9EUGL) HSP 1 Score: 70.5 bits (171), Expect = 1.070e-12 Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
RL S IV AG+ LGPL++PLPL G+L+F + D ++RVTRGNRGGLF+H+RP
Sbjct: 321 RLISDIVYAGLHLGPLKIPLPLRA-TGWLEFVYLDSELRVTRGNRGGLFVHIRP 373
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S0VW87_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW87_9CRYP) HSP 1 Score: 67.0 bits (162), Expect = 9.300e-12 Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
R+ IV A VKL L LPLPL + G+LDF + DED+RVTRGNRGGLF H+RP
Sbjct: 200 RISCDIVDASVKLWKLPTLPLPLRAKGGWLDFLYLDEDMRVTRGNRGGLFFHVRP 254
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A6S8ZJ62_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZJ62_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.780e-11 Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
R+ IV A K L LPLPL + GYLDF + DEDIR+T+GNRGGLF+H RP
Sbjct: 201 RISCDIVGASFKYWKLPTLPLPLRAKGGYLDFIYMDEDIRITKGNRGGLFVHFRP 255
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S2XN84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN84_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.860e-11 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 52 LPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
LPLPL + GYLDF F D+DIRVTRGNRGGLF+H RP
Sbjct: 123 LPLPLKKKGGYLDFVFMDQDIRVTRGNRGGLFVHFRP 159
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A6T8LFK0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8LFK0_HEMAN) HSP 1 Score: 65.5 bits (158), Expect = 3.380e-11 Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
R+ IV A +KL L LPLPL + G+LDF + DED+RVT+GNRGGLF H+RP
Sbjct: 198 RISCDIVDASIKLWKLPTLPLPLRAKGGWLDFLYLDEDMRVTKGNRGGLFFHVRP 252
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1DWM1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DWM1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.570e-11 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPL-RLPLPLTGRVG-YLDFTFQDEDIRVTRGNRGGLFMHMRP 162
R+ IVAA +K+ R+PLP R G YLDF + D DIR+T+GNRGGLF+H RP
Sbjct: 65 RIMCDIVAASIKIWRFPRIPLPFLRRKGGYLDFVYLDNDIRITKGNRGGLFVHFRP 120
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1VT19_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT19_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.600e-10 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPL-RLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRP 162
R+ IV A K L R+PLPL + GYLDF + D+D+RVT+GNRGGLF+H RP
Sbjct: 233 RISCDIVGASWKFWKLPRVPLPLRKKGGYLDFLYLDKDVRVTKGNRGGLFVHFRP 287
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Match: A0A7S1IY75_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IY75_9EUGL) HSP 1 Score: 63.5 bits (153), Expect = 2.560e-10 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1 RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMHMRPGSS 171
RL STI AG+ + LRLPLPL G+L++ + D ++RVTRGNRGGLF+H+RP +
Sbjct: 144 RLTSTIFYAGLHILCLRLPLPLRA-TGWLEYIYLDPELRVTRGNRGGLFVHIRPAKA 199 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80277.15680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80277.15680.1 >prot_H-elongata_contig80277.15680.1 ID=prot_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp RLQSTIVAAGVKLGPLRLPLPLTGRVGYLDFTFQDEDIRVTRGNRGGLFMback to top mRNA from alignment at H-elongata_contig80277:48..621+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80277.15680.1 ID=mRNA_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=574bp|location=Sequence derived from alignment at H-elongata_contig80277:48..621+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80277:48..621+ >mRNA_H-elongata_contig80277.15680.1 ID=mRNA_H-elongata_contig80277.15680.1|Name=mRNA_H-elongata_contig80277.15680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig80277:48..621+ (Himanthalia elongata Himel1 dioecious)back to top |