mRNA_H-elongata_contig79869.15638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79869.15638.1
Unique NamemRNA_H-elongata_contig79869.15638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A6H5L555_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L555_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 2.440e-125
Identity = 192/253 (75.89%), Postives = 224/253 (88.54%), Query Frame = 1
Query:    1 GVLIARLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAVDLNS 759
            GVL ARL SD AAA++AS++VSPFISIVDR+IIQSASG+MGMK+S+AQG RV+ TKPALF +RPDF+CTF LY ATYLAAN I+T+A E +RSDT+PKF+GTTA+NMPGSIAKDQALTK+FGVV  AA+VPAASFALFT+RDVATMAAAFTLPTPMSA++Q+ FGV+S MAD  SQLVSPGL Q+F TPVHILGLDLYNHP++S  ARLRVVQ SF+PA+ MRV RIGVAFGVGGLGNT+IR  LH A+  +S
Sbjct:   58 GVLAARLVSDFAAASMASLMVSPFISIVDRAIIQSASGSMGMKASVAQGFRVLATKPALFLARPDFICTFCLYGATYLAANTISTMADEYSRSDTMPKFLGTTAINMPGSIAKDQALTKIFGVVGSAAKVPAASFALFTVRDVATMAAAFTLPTPMSARMQESFGVDSGMADVTSQLVSPGLVQVFSTPVHILGLDLYNHPRSSCRARLRVVQDSFMPAIAMRVARIGVAFGVGGLGNTSIRNMLHGAIAKSS 310          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: D8LGM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM5_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 3.450e-102
Identity = 173/249 (69.48%), Postives = 199/249 (79.92%), Query Frame = 1
Query:    1 GVLIARLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAV 747
            GVL ARL SD AAA++AS++VSPFISIVDR+IIQSASG+MGMK+S+AQG RV+ TKPALF +RPDF+CTF LY ATYLAAN I+T+A E +RSDT+PKF+GTTA+NMPGSIAKDQALTK+FGVV  AA+VPAASFALFT+RDVATMAAAFTLPTPMS K+Q DFGV+S MAD  SQLVSPGL QLF TP                         SF+PA+ MRV RIGVAFGVGGLGNT+IR  LH A+
Sbjct:   91 GVLAARLVSDFAAASMASLMVSPFISIVDRAIIQSASGSMGMKASVAQGFRVLATKPALFLARPDFICTFCLYGATYLAANTISTMADEFSRSDTMPKFLGTTAINMPGSIAKDQALTKIFGVVGSAAKVPAASFALFTVRDVATMAAAFTLPTPMSTKMQ-DFGVDSGMADVTSQLVSPGLVQLFSTP------------------------DSFMPAIAMRVARIGVAFGVGGLGNTSIRNKLHGAI 314          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL)

HSP 1 Score: 200 bits (509), Expect = 4.900e-59
Identity = 116/246 (47.15%), Postives = 156/246 (63.41%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAVDL 753
            RL  D+AAAA AS+ VSPFI+IVDR+II++ASG   +   + Q     +  P  F  R +F   F LY ATY +AN I T+   T   + +PKFVGTTAVNM   IAKD+A T++FGV+  AA  P AS  LF +RD  T+AA+F  P  M+ ++Q+   V  S +  +SQLV P   Q   TP+H++GLDLYNH  AS + RL  VQ  ++ ++F R+ RIG AFG+GG+GNT  R+ L  A+ L
Sbjct:   19 RLGVDVAAAATASLGVSPFIAIVDRAIIENASGARRLSDGVKQLSMEFLRHPLRFLHRREFRLVFGLYTATYASANSIETLCDATDTDNQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAA-FPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEKAHVKPSTSATISQLVCPAAVQFVSTPLHLVGLDLYNHKGASMSQRLVFVQREYIKSVFARIARIGPAFGIGGVGNTYCRQRLRTALSL 263          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A5D6XW10_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW10_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.260e-58
Identity = 113/250 (45.20%), Postives = 155/250 (62.00%), Query Frame = 1
Query:    1 GVLIARLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAVD 750
            G+L  RLA+D+ AAA AS  V+PFI+IVDR+II++ASG   +   + +  R    +P  F    +F   F LY ATY +AN   ++     R   +PKF  TTAVNM   IAKD+A  ++FGVV  +A  P A+  LF +RD  T+AA+F  P  ++ K+Q D GV+ + A   +QL+ P L Q   TP+H+LGLDLYNH  A AAA LRVV+  +L +   R+ RIG AFG+GG+GN   R+ L  A+D
Sbjct:   18 GLLTRRLAADVTAAATASFAVAPFITIVDRAIIENASGARPLGVGIRELARAFARRPLAFVRTREFAIVFGLYTATYASANATDSLCDFAERDSQMPKFAATTAVNMSLCIAKDRAFAQMFGVVAPSA-FPLAAVGLFAVRDSLTVAASFNAPKAVARKLQDDTGVDPARARTAAQLLCPALVQFVSTPLHLLGLDLYNHKGAGAAAHLRVVRREYLKSAIARIGRIGPAFGIGGIGNAHCRETLRAALD 266          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.800e-56
Identity = 105/240 (43.75%), Postives = 155/240 (64.58%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCL 735
             L  D+ +A  AS +VSPFI+IVDRSIIQ+ASG M M  S+  G++ +V +P +F  RP+F+  F +Y+ATY  AN + T           P+F+ T+AVNM   IAKD+A T++FG  +    +P +++ALFT+RD  T+ A+F LP P+S  +Q   G++ + AD  +Q+  P   Q   TP+H++GLDLYN+PK++A  R   + S +  ++  R+ RIG AFG+GG+GNTA RK L
Sbjct:   36 HLGLDVLSAFGASFMVSPFITIVDRSIIQNASGVMQMGDSIRAGIKELVMRPHVFLRRPEFLMIFGVYSATYTTANAVNTTCEHRKVDSAWPRFLSTSAVNMTSCIAKDRAFTRMFGS-SAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGL 273          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.610e-55
Identity = 110/240 (45.83%), Postives = 152/240 (63.33%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCL 735
            RL  D+AAA  AS+ V+PFI+IVDR+II++ASG   +   L Q     V  P  F  + +F+  F LY+ATY++AN I T+     + + +PKF+GTTAVNM   IAKD+A  ++FGV+  AA  P AS  LF +RD  T+AA+F  P  ++ K++ D  +  S A  ++QLV P   Q   TP+H+LGLDLYN+   SAA R   VQ  +L ++F R+ RIG AFG+GG+GNT  R  L
Sbjct:   19 RLGIDLAAAMAASVSVAPFITIVDRAIIENASGARPLGVGLKQLAADFVRHPLRFVVKREFLLIFGLYSATYVSANAIDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAA-FPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQL 257          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: K3WSU5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU5_GLOUD)

HSP 1 Score: 189 bits (481), Expect = 7.550e-55
Identity = 108/240 (45.00%), Postives = 150/240 (62.50%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCL 735
             LA D+AAAA AS  VSPFI+IVDR+II++ASG   +   + +  +  V  P  F  + +F+  F LY +TY +AN I T+       + +PKF+GTTAVNM   IAKD+A  ++FGVV  +A  P  +  LF +RD  T+ A+F  P  ++ K++ D GV  S A  ++QL+ P   Q   TP+H+LGLDLYN+  AS AAR R VQ  +L +   R+ RIG AFG+GG+GNT  R+ L
Sbjct:   20 NLAIDLAAAAAASFAVSPFITIVDRAIIENASGARPLAVGIKELSKAFVANPFQFVRKREFIIVFGLYTSTYASANAIDTVCEWAEADNQMPKFLGTTAVNMTLCIAKDRAFAQMFGVVAPSA-FPIGAIGLFAIRDSLTVGASFNAPKTVAKKLEVDGGVEPSRAKTLAQLLCPAAVQFVSTPLHLLGLDLYNNKGASVAARFRFVQREYLKSAVARIGRIGPAFGIGGVGNTYCRENL 258          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A2D4BK36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK36_PYTIN)

HSP 1 Score: 188 bits (477), Expect = 3.080e-54
Identity = 111/246 (45.12%), Postives = 153/246 (62.20%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAVDL 753
            RL  D AAA +AS+ VSPFI+IVDRSII++ASG   + + L +     +  P  F  R +F   F LY ATY +AN I T+   T  +  +PKFVGTTAVNM   IAKD+A T++FGV+  AA  P AS  LF +RD  T+AA+F  P  ++ ++++   +  S A  V+QL+ P + Q   TP+H+LGLDLYNH  A    R+  VQ  +L +   R+ RIG AFGVGG+GNT  R+ L  ++ +
Sbjct:   20 RLGVDAAAAMIASLGVSPFITIVDRSIIENASGARQLTTGLKELSIDFLRHPLQFLRRREFRLVFGLYTATYASANAIDTLCDVTDTNSQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAA-FPLASIGLFAVRDALTVAASFNAPRVVAKELRERAQLEPSRASTVAQLLCPAVVQFVSTPLHLLGLDLYNHRTAMVRQRINFVQREYLKSAVARIGRIGPAFGVGGVGNTFCRERLRASLHV 264          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A507FR36_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FR36_9FUNG)

HSP 1 Score: 179 bits (455), Expect = 5.700e-51
Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query:   19 LASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAAR-VPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCL 735
            L+ D  AA   S  VSPF++I+DRSII +ASG M + + LA G R + T+P++ + +P  +  FS+YA TY+ AN   TIA  T     LPKF+ ++ VN+   + KD+ LT    +  G AR  P +S+ LF +RD  T+AA+F+LP  +SA +Q +  ++ +  D +SQL  P + Q   TP+H+ GLD YNHP A+   R++VV+  F+PA   R+ RI  AFG GGL N   R  L
Sbjct:   21 LSIDCVAALATSAAVSPFVAIIDRSIISNASGRMPLMAGLADGFRTLATRPSVLARQPSVLAVFSVYAITYITANSSETIALSTNSDPLLPKFIASSTVNIAACVYKDKLLTHWCSL--GPARPFPMSSYGLFGLRDSLTVAASFSLPPFLSAALQSNSSLSKTSCDSISQLALPCMVQFISTPIHLFGLDYYNHPSATVMQRVQVVKRDFIPATLARMGRILPAFGFGGLVNNKTRSTL 258          
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Match: A0A397IN71_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IN71_9GLOM)

HSP 1 Score: 180 bits (457), Expect = 5.860e-51
Identity = 107/247 (43.32%), Postives = 151/247 (61.13%), Query Frame = 1
Query:   16 RLASDIAAAAVASILVSPFISIVDRSIIQSASGTMGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASETARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFTMRDVATMAAAFTLPTPMSAKIQQDFGV--NSSMADGVSQLVSPGLAQLFCTPVHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNTAIRKCLHDAVD 750
            RL  DI AA+ A+  VSPFI+IVDRSII++ASG   +  +L QG   + T+P  F   P F   F +YAATY  AN I TI + T + +  PKF+GTT  NM   I KD+A T++FG+V     +P +S+  F  RD  T+AA+F +P P  AK  QD  +  +S  +  V+QL+ P   Q     +H+LGLD+YN P  S  +RL+ +Q ++L     R+ RIG AFG+GG+GN  IR+ +++ VD
Sbjct:   13 RLGVDIFAASTAAFGVSPFIAIVDRSIIENASGREKLGKALKQGFIHLFTRPFNFIRSPSFFLVFGVYAATYSTANTIDTICAYTKQDNQTPKFLGTTIANMTTCIYKDRAFTRMFGLV-APKGLPWSSYGYFAARDALTIAASFNIP-PTLAKEFQDRKIILDSETSQNVAQLICPAAVQFISCALHLLGLDIYNRPGESMLSRLQFLQRTYLKTTITRIARIGPAFGIGGVGNRVIRERVNEMVD 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79869.15638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L555_9PHAE2.440e-12575.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGM5_ECTSI3.450e-10269.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CT18_PYTOL4.900e-5947.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XW10_9STRA2.260e-5845.20Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835Z5G8_9STRA5.800e-5643.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XCZ4_9STRA2.610e-5545.83Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WSU5_GLOUD7.550e-5545.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BK36_PYTIN3.080e-5445.12Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A507FR36_9FUNG5.700e-5142.08Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A397IN71_9GLOM5.860e-5143.32Uncharacterized protein n=1 Tax=Diversispora epiga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79869contigH-elongata_contig79869:746..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue4.2e-68
Seed eggNOG ortholog2880.D8LGM5
EggNOG OGs28PN9@1,2QWAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002780.1
Exons3
Model size1056
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79869.15638.1prot_H-elongata_contig79869.15638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79869 863..2299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.7737834-UTR-H-elongata_contig79869:745..8621622931203.7737834-UTR-H-elongata_contig79869:745..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79869 746..862 +
1691679740.2706506-UTR-H-elongata_contig79869:745..8621691679740.2706506-UTR-H-elongata_contig79869:745..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79869 746..862 +
1622931203.8723257-UTR-H-elongata_contig79869:2299..25631622931203.8723257-UTR-H-elongata_contig79869:2299..2563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79869 2300..2563 +
1691679740.3092916-UTR-H-elongata_contig79869:2299..25631691679740.3092916-UTR-H-elongata_contig79869:2299..2563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79869 2300..2563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.8130546-CDS-H-elongata_contig79869:862..9741622931203.8130546-CDS-H-elongata_contig79869:862..974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 863..974 +
1691679740.2800484-CDS-H-elongata_contig79869:862..9741691679740.2800484-CDS-H-elongata_contig79869:862..974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 863..974 +
1622931203.832011-CDS-H-elongata_contig79869:1421..16691622931203.832011-CDS-H-elongata_contig79869:1421..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 1422..1669 +
1691679740.2884753-CDS-H-elongata_contig79869:1421..16691691679740.2884753-CDS-H-elongata_contig79869:1421..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 1422..1669 +
1622931203.8522768-CDS-H-elongata_contig79869:1984..22991622931203.8522768-CDS-H-elongata_contig79869:1984..2299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 1985..2299 +
1691679740.2978926-CDS-H-elongata_contig79869:1984..22991691679740.2978926-CDS-H-elongata_contig79869:1984..2299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79869 1985..2299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79869.15638.1

>prot_H-elongata_contig79869.15638.1 ID=prot_H-elongata_contig79869.15638.1|Name=mRNA_H-elongata_contig79869.15638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
MGMKSSLAQGLRVMVTKPALFSSRPDFVCTFSLYAATYLAANWITTIASE
TARSDTLPKFVGTTAVNMPGSIAKDQALTKLFGVVNGAARVPAASFALFT
MRDVATMAAAFTLPTPMSAKIQQDFGVNSSMADGVSQLVSPGLAQLFCTP
VHILGLDLYNHPKASAAARLRVVQSSFLPAMFMRVCRIGVAFGVGGLGNT
AIRKCLHDAVDLNSSRSPPPRHVA*
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mRNA from alignment at H-elongata_contig79869:746..2563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79869.15638.1 ID=mRNA_H-elongata_contig79869.15638.1|Name=mRNA_H-elongata_contig79869.15638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-elongata_contig79869:746..2563+ (Himanthalia elongata Himel1 dioecious)
GGCGTTCTCATCGCCCGCCTTGCGAGTGACATCGCCGCGGCGGCGGTGGC GAGCATCTTGGTGAGCCCGTTCATCTCGATCGTGGACCGATCGATCATCC AGAGCGCGAGCGGGACGATGGGGATGAAGTCGTCCCTGGCGCAGGGGCTC AGGGTGATGGTAACCAAGCCGGCACTGTTTTCGTCCAGGCCCGACTTCGT CTGCACGTTCTCCCTCTACGCCGCGACCTGTGAGTACTTCCTGTGCATTT TATTTATCGGCAACCGCTATTTTGTTTTGCTGTGGGACGGCATTTTTATG TTCTCGGCAGTCACTATTTTTCTGTCGAACGGTATTTCTATATTATATTT TGTTTGTATGTGTGTTTTGGGGGATTGTTTTTGTGTTCAGTGTTCAGTGT GTGTGTGTTTTGAGCTTATCCGGAAAAATATGTTGTTGAGGTTGGTCGGT CTGCGCAGGAGCTACTCTCGTAGATTAACAAGGAGGCTGACAATCGAACG CCTTCCCATGGTCGCGAAAACCTCCATTCAACAACATCGAATGCTTGTCC ATCCGTCCCCCCCCCCCATCCACGTGCGAAGAAAAGTTTGCGTCTCCTTG AATTGAAAACTATAGCACTGCTCTTCGTGGACCAACCCGCCTCGCGATTT CTTTCGCGCAACACACGTACGTGCAGACCTCGCGGCGAACTGGATCACCA CGATCGCCAGCGAGACTGCCCGCTCCGACACGCTGCCCAAGTTTGTGGGC ACCACCGCCGTCAACATGCCCGGCTCAATCGCGAAAGACCAGGCGCTGAC GAAGCTCTTCGGCGTCGTGAACGGGGCGGCCAGAGTTCCTGCCGCAAGCT TTGCGCTCTTCACCATGCGCGACGTAGCTACCATGGCCGCCGCGTTCACG TTGCCGACACCAATGTCCGCAAAGGTGATGATGACCGCTGCTACTGCTGC TACTGCTGCTGCTGCAGAGCCAGCACCCGAGGCGGAAGGAGAACCATGGA GGGGATGGGGGCACAATATATATATATATATACATATATAAACTGGTATA TTATACCGATGCGGAGACATGTAAATTTCAACGACTTTTCCCTCTCAAGC ACATAACTTTTAAAAAGGCCTGCATAAACATCTCGAGTATTTTCTTCGAG CACTCATTTTGTGAATGACCGTTGCTATAGGCTCGGCTCTTTTTATGACA CCTCCTCCTCCCCCCTTTTATATCTGTTCGCTGCGGCAGATACAACAAGA CTTTGGCGTGAACAGTAGCATGGCAGATGGCGTGTCTCAGCTCGTTTCAC CGGGTCTTGCACAGCTGTTCTGTACACCAGTGCACATCCTGGGACTGGAT CTCTACAACCACCCGAAGGCGTCCGCCGCGGCGCGTCTGCGGGTGGTGCA GAGCTCGTTTTTGCCGGCGATGTTCATGCGCGTGTGCCGAATCGGCGTAG CCTTCGGCGTCGGAGGCCTGGGCAACACCGCCATCCGAAAATGCCTACAT GATGCCGTCGACTTGAACTCCTCCAGGTCGCCGCCACCGCGCCATGTCGC ATAGGAAGACAACGCACAGCGATGGAAGCTTTATGTCCCATGTATTACAT ATTTTACTTAGCGCGCATGGTGGATAACAAAAATGGTTGAAGCGATTTCG AGGTACGTACGTCATCAGAGATCCGGGGAGGTGTACTATTATTAGCGAGG GGGTTGTAAATAGTGGGTTCGTGAGCTTTAAGGCAAGAGTAAAGTTAAGG CCTAGCATAAACGATGGGGAACACACACACAAAAACGGGGCGATCAAAAA CTCGACCGACGGATGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig79869:746..2563+

>mRNA_H-elongata_contig79869.15638.1 ID=mRNA_H-elongata_contig79869.15638.1|Name=mRNA_H-elongata_contig79869.15638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig79869:746..2563+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATGAAGTCGTCCCTGGCGCAGGGGCTCAGGGTGATGGTAACCAA
GCCGGCACTGTTTTCGTCCAGGCCCGACTTCGTCTGCACGTTCTCCCTCT
ACGCCGCGACCTATGGGGATGAAGTCGTCCCTGGCGCAGGGGCTCAGGGT
GATGGTAACCAAGCCGGCACTGTTTTCGTCCAGGCCCGACTTCGTCTGCA
CGTTCTCCCTCTACGCCGCGACCTACCTCGCGGCGAACTGGATCACCACG
ATCGCCAGCGAGACTGCCCGCTCCGACACGCTGCCCAAGTTTGTGGGCAC
CACCGCCGTCAACATGCCCGGCTCAATCGCGAAAGACCAGGCGCTGACGA
AGCTCTTCGGCGTCGTGAACGGGGCGGCCAGAGTTCCTGCCGCAAGCTTT
GCGCTCTTCACCATGCGCGACGTAGCTACCATGGCCGCCGCGTTCACGTT
GCCGACACCAATGTCCGCAAAGACCTCGCGGCGAACTGGATCACCACGAT
CGCCAGCGAGACTGCCCGCTCCGACACGCTGCCCAAGTTTGTGGGCACCA
CCGCCGTCAACATGCCCGGCTCAATCGCGAAAGACCAGGCGCTGACGAAG
CTCTTCGGCGTCGTGAACGGGGCGGCCAGAGTTCCTGCCGCAAGCTTTGC
GCTCTTCACCATGCGCGACGTAGCTACCATGGCCGCCGCGTTCACGTTGC
CGACACCAATGTCCGCAAAGATACAACAAGACTTTGGCGTGAACAGTAGC
ATGGCAGATGGCGTGTCTCAGCTCGTTTCACCGGGTCTTGCACAGCTGTT
CTGTACACCAGTGCACATCCTGGGACTGGATCTCTACAACCACCCGAAGG
CGTCCGCCGCGGCGCGTCTGCGGGTGGTGCAGAGCTCGTTTTTGCCGGCG
ATGTTCATGCGCGTGTGCCGAATCGGCGTAGCCTTCGGCGTCGGAGGCCT
GGGCAACACCGCCATCCGAAAATGCCTACATGATGCCGTCGACTTGAACT
CCTCCAGGTCGCCGCCACCGCGCCATGTCGCATAGATACAACAAGACTTT
GGCGTGAACAGTAGCATGGCAGATGGCGTGTCTCAGCTCGTTTCACCGGG
TCTTGCACAGCTGTTCTGTACACCAGTGCACATCCTGGGACTGGATCTCT
ACAACCACCCGAAGGCGTCCGCCGCGGCGCGTCTGCGGGTGGTGCAGAGC
TCGTTTTTGCCGGCGATGTTCATGCGCGTGTGCCGAATCGGCGTAGCCTT
CGGCGTCGGAGGCCTGGGCAACACCGCCATCCGAAAATGCCTACATGATG
CCGTCGACTTGAACTCCTCCAGGTCGCCGCCACCGCGCCATGTCGCATAG
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