mRNA_H-elongata_contig79695.15623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79695.15623.1
Unique NamemRNA_H-elongata_contig79695.15623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: D7FJ04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ04_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.200e-50
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
            QNPV+LQGFASGITNLGGLTKGFGEEVSVATAWSHFLAED+FIGRWVYLDGQRN IF KHSL LCYLFGPAGFLSHLLTR V  +VKP VRDI
Sbjct:  242 QNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDI 334          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S3Y5F1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F1_HETAK)

HSP 1 Score: 125 bits (315), Expect = 1.700e-34
Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPN 267
            Q+P ALQGF+  IT+L  LTKGFG EV+VATAW+HF+A+D+F+GR++YLDG +NG+F +HS+AL YLFGPAG LSHL+TR    ++ P 
Sbjct:   36 QDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPG 124          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S3Y5E5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E5_HETAK)

HSP 1 Score: 125 bits (315), Expect = 5.560e-32
Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPN 267
            Q+P ALQGF+  IT+L  LTKGFG EV+VATAW+HF+A+D+F+GR++YLDG +NG+F +HS+AL YLFGPAG LSHL+TR    ++ P 
Sbjct:  339 QDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPG 427          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A835YXE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.330e-31
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
            QNPV+L GF+ G  +L  LTKGF +EVSVA  W+HF+A+D+F+GRWVYLD +RN ++  HSLALCYLFGP G LSHLLTR +  I + +V DI
Sbjct:  217 QNPVSLAGFSGGAFDLDTLTKGFTQEVSVADGWAHFIAQDLFVGRWVYLDSKRNSVWAAHSLALCYLFGPIGVLSHLLTRGLSGIFRQDVTDI 309          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: W7U388_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U388_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.950e-28
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
            Q+P AL+GFAS I++L  L+KG G E   ATAW+HF+A+D+F+GRW++LDG RNG++  HSL L +LFGP G LSHLLTR+   I + ++ DI
Sbjct:  327 QDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADI 418          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: C1N0R2_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0R2_MICPC)

HSP 1 Score: 92.4 bits (228), Expect = 4.380e-22
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
            +P  L  F++G  +L  L KGF  E  VA  W+HF+A D+F GRW+YLD ++N +F  HSL LC  FGP G +SH+ TR +
Sbjct:   54 DPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTRAI 134          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S0KR27_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KR27_MICPS)

HSP 1 Score: 94.4 bits (233), Expect = 6.310e-22
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
            +P  ++ F++G  +L  L+KGF  E  +A  W+HF+A D+F+GRW+YLD ++N +F  HSL LC  FGP G +SH LTR V
Sbjct:  116 DPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTLTRGV 196          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7R9TAY7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TAY7_9VIRI)

HSP 1 Score: 93.2 bits (230), Expect = 6.390e-22
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVK 261
            +P AL GF++  T + G+ +  G     A  W HF+A+D F+GR+VYLDG R+ +F++HSL LC+LFGP G LSHL TR     V+
Sbjct:   69 DPAALDGFSNSAT-VAGVAQALGSPTGAAVGWVHFIAQDFFVGRYVYLDGLRHDVFSRHSLLLCFLFGPLGVLSHLATRAATAAVR 153          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A0G4GWJ9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWJ9_VITBC)

HSP 1 Score: 92.8 bits (229), Expect = 4.920e-21
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    7 PVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
            P A++G   G   L  LTK F  E  VAT W HFLAED+F+GRWVYLDG++N +  +HS  L  LFGP G +SHL+TR +
Sbjct:  152 PEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTRDI 231          
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: UPI00202129CC (ABA4-like family protein n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI00202129CC)

HSP 1 Score: 88.2 bits (217), Expect = 4.010e-20
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 VALQGFASGIT----------NLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTR 240
            V L  FAS IT           L  + + FGEE + AT W HFL  D+F+GRW+Y +GQR GI+  HSLALC   GP G LSH+LTR
Sbjct:   46 VYLYLFASSITPENAQALSNPQLADIAQFFGEETAAATGWIHFLVMDLFVGRWIYWEGQRTGIWTIHSLALCLFAGPLGLLSHILTR 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ04_ECTSI1.200e-5089.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y5F1_HETAK1.700e-3461.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y5E5_HETAK5.560e-3261.80Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A835YXE1_9STRA1.330e-3161.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U388_9STRA1.950e-2855.91Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
C1N0R2_MICPC4.380e-2248.15Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A7S0KR27_MICPS6.310e-2248.15Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7R9TAY7_9VIRI6.390e-2247.67Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A0G4GWJ9_VITBC4.920e-2153.75Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
UPI00202129CC4.010e-2050.57ABA4-like family protein n=1 Tax=Chroococcidiopsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79695contigH-elongata_contig79695:518..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.8e-41
Seed eggNOG ortholog2880.D7FJ04
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006082,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009687,GO:0009688,GO:0009941,GO:0009987,GO:0016053,GO:0016106,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016122,GO:0016123,GO:0019222,GO:0019752,GO:0031323,GO:0031967,GO:0031975,GO:0032787,GO:0032928,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043288,GO:0043289,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046165,GO:0046394,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0072330,GO:0090322,GO:1901576,GO:1901615,GO:1901617,GO:1902644,GO:1902645,GO:2000377
EggNOG free text desc.xanthophyll metabolic process
EggNOG OGs28P8V@1,2QVVZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931201.8830078-CDS-H-elongata_contig79695:517..6461622931201.8830078-CDS-H-elongata_contig79695:517..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79695 518..646 +
1691679739.4097302-CDS-H-elongata_contig79695:517..6461691679739.4097302-CDS-H-elongata_contig79695:517..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79695 518..646 +
1622931201.9011123-CDS-H-elongata_contig79695:775..9251622931201.9011123-CDS-H-elongata_contig79695:775..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79695 776..925 +
1691679739.425622-CDS-H-elongata_contig79695:775..9251691679739.425622-CDS-H-elongata_contig79695:775..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79695 776..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79695.15623.1prot_H-elongata_contig79695.15623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79695 518..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79695.15623.1

>prot_H-elongata_contig79695.15623.1 ID=prot_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLD
GQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI
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mRNA from alignment at H-elongata_contig79695:518..925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79695.15623.1 ID=mRNA_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig79695:518..925+ (Himanthalia elongata Himel1 dioecious)
CAGAATCCCGTGGCGCTCCAAGGATTTGCGAGTGGGATCACCAACTTGGG TGGCTTGACAAAGGGATTTGGGGAGGAGGTCTCGGTTGCGACAGCCTGGT CTCATTTCTTGGCTGAGGACATCTTTATCGTGAGTGGCGTGAGTGGCATG CGGCTCGTGGTTAATGTTCATGGTGCATTTTATATAAGAAATATCACGGA CATACCCAAAGCAGTCGACCCGCCTCCTCGGAACCCCGCCTTCTGATCTG CATCCCAGGGACGATGGGTGTACCTCGATGGACAAAGAAATGGCATTTTC AACAAGCACAGTCTTGCTCTCTGCTACCTCTTCGGCCCTGCTGGTTTTCT GAGTCACCTTCTCACCCGTACAGTATTCATCATCGTAAAACCGAACGTCC GGGATATC
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Coding sequence (CDS) from alignment at H-elongata_contig79695:518..925+

>mRNA_H-elongata_contig79695.15623.1 ID=mRNA_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig79695:518..925+ (Himanthalia elongata Himel1 dioecious)
CAGAATCCCGTGGCGCTCCAAGGATTTGCGAGTGGGATCACCAACTTGGG
TGGCTTGACAAAGGGATTTGGGGAGGAGGTCTCGGTTGCGACAGCCTGGT
CTCATTTCTTGGCTGAGGACATCTTTATCCAGAATCCCGTGGCGCTCCAA
GGATTTGCGAGTGGGATCACCAACTTGGGTGGCTTGACAAAGGGATTTGG
GGAGGAGGTCTCGGTTGCGACAGCCTGGTCTCATTTCTTGGCTGAGGACA
TCTTTATCGGACGATGGGTGTACCTCGATGGACAAAGAAATGGCATTTTC
AACAAGCACAGTCTTGCTCTCTGCTACCTCTTCGGCCCTGCTGGTTTTCT
GAGTCACCTTCTCACCCGTACAGTATTCATCATCGTAAAACCGAACGTCC
GGGATATCGGACGATGGGTGTACCTCGATGGACAAAGAAATGGCATTTTC
AACAAGCACAGTCTTGCTCTCTGCTACCTCTTCGGCCCTGCTGGTTTTCT
GAGTCACCTTCTCACCCGTACAGTATTCATCATCGTAAAACCGAACGTCC
GGGATATC
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