mRNA_H-elongata_contig79695.15623.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: D7FJ04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ04_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.200e-50 Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
QNPV+LQGFASGITNLGGLTKGFGEEVSVATAWSHFLAED+FIGRWVYLDGQRN IF KHSL LCYLFGPAGFLSHLLTR V +VKP VRDI
Sbjct: 242 QNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDI 334
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S3Y5F1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F1_HETAK) HSP 1 Score: 125 bits (315), Expect = 1.700e-34 Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1
Query: 1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPN 267
Q+P ALQGF+ IT+L LTKGFG EV+VATAW+HF+A+D+F+GR++YLDG +NG+F +HS+AL YLFGPAG LSHL+TR ++ P
Sbjct: 36 QDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPG 124
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S3Y5E5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E5_HETAK) HSP 1 Score: 125 bits (315), Expect = 5.560e-32 Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1
Query: 1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPN 267
Q+P ALQGF+ IT+L LTKGFG EV+VATAW+HF+A+D+F+GR++YLDG +NG+F +HS+AL YLFGPAG LSHL+TR ++ P
Sbjct: 339 QDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPG 427
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A835YXE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE1_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.330e-31 Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
QNPV+L GF+ G +L LTKGF +EVSVA W+HF+A+D+F+GRWVYLD +RN ++ HSLALCYLFGP G LSHLLTR + I + +V DI
Sbjct: 217 QNPVSLAGFSGGAFDLDTLTKGFTQEVSVADGWAHFIAQDLFVGRWVYLDSKRNSVWAAHSLALCYLFGPIGVLSHLLTRGLSGIFRQDVTDI 309
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: W7U388_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U388_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.950e-28 Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVKPNVRDI 279
Q+P AL+GFAS I++L L+KG G E ATAW+HF+A+D+F+GRW++LDG RNG++ HSL L +LFGP G LSHLLTR+ I + ++ DI
Sbjct: 327 QDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADI 418
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: C1N0R2_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0R2_MICPC) HSP 1 Score: 92.4 bits (228), Expect = 4.380e-22 Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
+P L F++G +L L KGF E VA W+HF+A D+F GRW+YLD ++N +F HSL LC FGP G +SH+ TR +
Sbjct: 54 DPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTRAI 134
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7S0KR27_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KR27_MICPS) HSP 1 Score: 94.4 bits (233), Expect = 6.310e-22 Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
+P ++ F++G +L L+KGF E +A W+HF+A D+F+GRW+YLD ++N +F HSL LC FGP G +SH LTR V
Sbjct: 116 DPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTLTRGV 196
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A7R9TAY7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TAY7_9VIRI) HSP 1 Score: 93.2 bits (230), Expect = 6.390e-22 Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 4 NPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTVFIIVK 261
+P AL GF++ T + G+ + G A W HF+A+D F+GR+VYLDG R+ +F++HSL LC+LFGP G LSHL TR V+
Sbjct: 69 DPAALDGFSNSAT-VAGVAQALGSPTGAAVGWVHFIAQDFFVGRYVYLDGLRHDVFSRHSLLLCFLFGPLGVLSHLATRAATAAVR 153
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: A0A0G4GWJ9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWJ9_VITBC) HSP 1 Score: 92.8 bits (229), Expect = 4.920e-21 Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 7 PVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTRTV 246
P A++G G L LTK F E VAT W HFLAED+F+GRWVYLDG++N + +HS L LFGP G +SHL+TR +
Sbjct: 152 PEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTRDI 231
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Match: UPI00202129CC (ABA4-like family protein n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI00202129CC) HSP 1 Score: 88.2 bits (217), Expect = 4.010e-20 Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 10 VALQGFASGIT----------NLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDGQRNGIFNKHSLALCYLFGPAGFLSHLLTR 240
V L FAS IT L + + FGEE + AT W HFL D+F+GRW+Y +GQR GI+ HSLALC GP G LSH+LTR
Sbjct: 46 VYLYLFASSITPENAQALSNPQLADIAQFFGEETAAATGWIHFLVMDLFVGRWIYWEGQRTGIWTIHSLALCLFAGPLGLLSHILTR 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79695.15623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79695.15623.1 >prot_H-elongata_contig79695.15623.1 ID=prot_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp QNPVALQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDIFIGRWVYLDback to top mRNA from alignment at H-elongata_contig79695:518..925+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79695.15623.1 ID=mRNA_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig79695:518..925+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79695:518..925+ >mRNA_H-elongata_contig79695.15623.1 ID=mRNA_H-elongata_contig79695.15623.1|Name=mRNA_H-elongata_contig79695.15623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig79695:518..925+ (Himanthalia elongata Himel1 dioecious)back to top |