mRNA_H-elongata_contig79423.15599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79423.15599.1
Unique NamemRNA_H-elongata_contig79423.15599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.510e-22
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD------IRVVDRLVHMCEGEEWVVIGTTYKA 189
            RFIVK KSFTQQFSHVYNKRLL L+ AVR+AAE RWG       ++ VDRLV+M EG+EWVVIGTTYKA
Sbjct:   49 RFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWVVIGTTYKA 117          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2UV96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV96_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 186
            RF+VK KSF QQFSH+Y KRLL ++  VR+    +WG  ++V+D++VH+ E + WVVIGT YK
Sbjct:   14 RFLVKEKSFNQQFSHIYTKRLLEMKEVVRKQCSQKWGPSVKVLDKVVHLQENQTWVVIGTLYK 76          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2RVE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVE5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.550e-8
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 186
            RF ++++ F+QQ+SH+YNKRLL +RP ++  A+ RWG D   +D+++++ E  +  V+GT  K
Sbjct:   48 RFTLQDRKFSQQYSHIYNKRLLQMRPLLQATAKERWGQDCSWMDQIINIPEESKVAVVGTLCK 110          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A8B8DZN5_CRAVI (DNA polymerase delta subunit 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZN5_CRAVI)

HSP 1 Score: 58.2 bits (139), Expect = 2.680e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
            RF++KNKSF++Q++H+Y +RL  +RP V  +A+ +WG   V  +L  +   E  VVIGT +K  E
Sbjct:   37 RFLLKNKSFSRQYAHLYAERLWEMRPQVVESAKEKWGKDTVFRKLHELKSDETCVVIGTLFKQME 101          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A5D6Y4J2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4J2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.660e-8
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
            RF++K KS+ QQFSHVY  RLL LR AV +   A  G   V+ +++ + +G+E V+IGT  K
Sbjct:   20 RFVLKQKSYNQQFSHVYVSRLLRLRAAVAQRVAADAGAPSVLPKIIDLRDGDECVIIGTALK 81          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7L3M1L3_9CHAR (DNA polymerase delta subunit 2 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3M1L3_9CHAR)

HSP 1 Score: 56.6 bits (135), Expect = 9.360e-8
Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    4 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
            F+++ +SF++Q++HVY  RLL +RP + + A+ +WG   V+ +L  +  GE+  V+GT +KA +
Sbjct:   39 FLLRQRSFSRQYAHVYAARLLQMRPLLEKRAQHKWGKNVVLRKLCELRAGEKCCVVGTLFKAMQ 102          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: K1REV3_CRAGI (DNA polymerase delta subunit 2 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1REV3_CRAGI)

HSP 1 Score: 55.5 bits (132), Expect = 2.390e-7
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
            RF++K+K+F++Q++H+Y +RL  +RP V  +A  +WG   V+ +L  +   E  VVIGT +K  E
Sbjct:   37 RFLLKDKTFSRQYAHLYAERLWEVRPKVEASARKKWGKDIVIRKLHELKSDETCVVIGTLFKHME 101          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: M2X386_GALSU (DNA polymerase delta subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X386_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 3.270e-7
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD-IRVVDRLVHMCEGEEWVVIGTTYK 186
            F++ +++++QQ+S +Y  RL  LRP V  AA  +W D I   DRL+H+ +G+  V+IG  YK
Sbjct:   25 FLLHSRNYSQQYSQIYFCRLAALRPVVENAARNKWTDGILFRDRLLHLQQGDNCVIIGVIYK 86          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A485KV49_9STRA (Aste57867_11961 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KV49_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-6
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
            RFI+K KS+ QQ++H+Y  RL  L P VR   EAR G + ++ +++ +  G+  V+IGT +K
Sbjct:   19 RFILKKKSYEQQYAHMYVSRLRALEPHVRAHVEARAG-VPILPKIIDLKPGDHCVIIGTIFK 79          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A3R6YY05_9STRA (DNA_pol_D_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YY05_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.360e-6
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
            RF++K KSF QQ+SH+Y  RL  L P VR         + ++ +++ +  G++ VVIGT ++
Sbjct:   23 RFVLKKKSFDQQYSHMYVSRLRALEPQVRANIPQSSAHVPILPKIIDLSAGDQCVVIGTIFR 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI2.510e-2272.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UV96_9STRA3.980e-1653.97Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RVE5_9STRA2.550e-841.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8B8DZN5_CRAVI2.680e-843.08DNA polymerase delta subunit 2-like n=1 Tax=Crasso... [more]
A0A5D6Y4J2_9STRA3.660e-846.77Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7L3M1L3_9CHAR9.360e-837.50DNA polymerase delta subunit 2 (Fragment) n=2 Tax=... [more]
K1REV3_CRAGI2.390e-740.00DNA polymerase delta subunit 2 n=2 Tax=Crassostrea... [more]
M2X386_GALSU3.270e-741.94DNA polymerase delta subunit 2 n=1 Tax=Galdieria s... [more]
A0A485KV49_9STRA1.140e-641.94Aste57867_11961 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R6YY05_9STRA5.360e-637.10DNA_pol_D_N domain-containing protein n=1 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79423contigH-elongata_contig79423:251..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue8.7e-19
Seed eggNOG ortholog2880.D7FZB3
Preferred namePOLD2
KEGG rclassRC02795
KEGG koko:K02321,ko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00261,M00262
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033567,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0042575,GO:0042592,GO:0042769,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0050896,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903046,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1311@1,KOG2732@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.8415892-CDS-H-elongata_contig79423:250..3301622931198.8415892-CDS-H-elongata_contig79423:250..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79423 251..330 -
1691679738.0696175-CDS-H-elongata_contig79423:250..3301691679738.0696175-CDS-H-elongata_contig79423:250..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79423 251..330 -
1622931198.8638957-CDS-H-elongata_contig79423:369..4841622931198.8638957-CDS-H-elongata_contig79423:369..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79423 370..484 -
1691679738.0798976-CDS-H-elongata_contig79423:369..4841691679738.0798976-CDS-H-elongata_contig79423:369..484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79423 370..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79423.15599.1prot_H-elongata_contig79423.15599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79423 251..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79423.15599.1

>prot_H-elongata_contig79423.15599.1 ID=prot_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCE
GEEWVVIGTTYKARE
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mRNA from alignment at H-elongata_contig79423:251..484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79423.15599.1 ID=mRNA_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig79423:251..484- (Himanthalia elongata Himel1 dioecious)
AGGTTTATAGTGAAGAACAAGAGCTTTACCCAGCAGTTCAGCCATGTTTA CAACAAGCGGCTGTTGGGGCTGAGGCCCGCCGTCCGGAGAGCCGCCGAGG CCCGGTGGGGCGACAGTGGGAGCATCAGCGGCGGCGATGGCGGTGGAGGT GGAGTTCGGGTGGTGGACCGGCTGGTGCACATGTGCGAAGGCGAGGAGTG GGTGGTAATCGGGACAACCTACAAGGCGAGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig79423:251..484-

>mRNA_H-elongata_contig79423.15599.1 ID=mRNA_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig79423:251..484- (Himanthalia elongata Himel1 dioecious)
AGGTTTATAGTGAAGAACAAGAGCTTTACCCAGCAGTTCAGCCATGTTTA
CAACAAGCGGCTGTTGGGGCTGAGGCCCGCCGTCCGGAGAGCCGCCGAGG
CCCGGTGGGGCGACAAGGTTTATAGTGAAGAACAAGAGCTTTACCCAGCA
GTTCAGCCATGTTTACAACAAGCGGCTGTTGGGGCTGAGGCCCGCCGTCC
GGAGAGCCGCCGAGGCCCGGTGGGGCGACATTCGGGTGGTGGACCGGCTG
GTGCACATGTGCGAAGGCGAGGAGTGGGTGGTAATCGGGACAACCTACAA
GGCGAGAGAGTTCGGGTGGTGGACCGGCTGGTGCACATGTGCGAAGGCGA
GGAGTGGGTGGTAATCGGGACAACCTACAAGGCGAGAGAG
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