mRNA_H-elongata_contig79423.15599.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.510e-22 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD------IRVVDRLVHMCEGEEWVVIGTTYKA 189
RFIVK KSFTQQFSHVYNKRLL L+ AVR+AAE RWG ++ VDRLV+M EG+EWVVIGTTYKA
Sbjct: 49 RFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWVVIGTTYKA 117
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2UV96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV96_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.980e-16 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 186
RF+VK KSF QQFSH+Y KRLL ++ VR+ +WG ++V+D++VH+ E + WVVIGT YK
Sbjct: 14 RFLVKEKSFNQQFSHIYTKRLLEMKEVVRKQCSQKWGPSVKVLDKVVHLQENQTWVVIGTLYK 76
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2RVE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVE5_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.550e-8 Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 186
RF ++++ F+QQ+SH+YNKRLL +RP ++ A+ RWG D +D+++++ E + V+GT K
Sbjct: 48 RFTLQDRKFSQQYSHIYNKRLLQMRPLLQATAKERWGQDCSWMDQIINIPEESKVAVVGTLCK 110
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A8B8DZN5_CRAVI (DNA polymerase delta subunit 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZN5_CRAVI) HSP 1 Score: 58.2 bits (139), Expect = 2.680e-8 Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
RF++KNKSF++Q++H+Y +RL +RP V +A+ +WG V +L + E VVIGT +K E
Sbjct: 37 RFLLKNKSFSRQYAHLYAERLWEMRPQVVESAKEKWGKDTVFRKLHELKSDETCVVIGTLFKQME 101
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A5D6Y4J2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4J2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.660e-8 Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
RF++K KS+ QQFSHVY RLL LR AV + A G V+ +++ + +G+E V+IGT K
Sbjct: 20 RFVLKQKSYNQQFSHVYVSRLLRLRAAVAQRVAADAGAPSVLPKIIDLRDGDECVIIGTALK 81
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7L3M1L3_9CHAR (DNA polymerase delta subunit 2 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3M1L3_9CHAR) HSP 1 Score: 56.6 bits (135), Expect = 9.360e-8 Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 4 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
F+++ +SF++Q++HVY RLL +RP + + A+ +WG V+ +L + GE+ V+GT +KA +
Sbjct: 39 FLLRQRSFSRQYAHVYAARLLQMRPLLEKRAQHKWGKNVVLRKLCELRAGEKCCVVGTLFKAMQ 102
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: K1REV3_CRAGI (DNA polymerase delta subunit 2 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1REV3_CRAGI) HSP 1 Score: 55.5 bits (132), Expect = 2.390e-7 Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 195
RF++K+K+F++Q++H+Y +RL +RP V +A +WG V+ +L + E VVIGT +K E
Sbjct: 37 RFLLKDKTFSRQYAHLYAERLWEVRPKVEASARKKWGKDIVIRKLHELKSDETCVVIGTLFKHME 101
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: M2X386_GALSU (DNA polymerase delta subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X386_GALSU) HSP 1 Score: 55.1 bits (131), Expect = 3.270e-7 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 4 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD-IRVVDRLVHMCEGEEWVVIGTTYK 186
F++ +++++QQ+S +Y RL LRP V AA +W D I DRL+H+ +G+ V+IG YK
Sbjct: 25 FLLHSRNYSQQYSQIYFCRLAALRPVVENAARNKWTDGILFRDRLLHLQQGDNCVIIGVIYK 86
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A485KV49_9STRA (Aste57867_11961 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KV49_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 1.140e-6 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
RFI+K KS+ QQ++H+Y RL L P VR EAR G + ++ +++ + G+ V+IGT +K
Sbjct: 19 RFILKKKSYEQQYAHMYVSRLRALEPHVRAHVEARAG-VPILPKIIDLKPGDHCVIIGTIFK 79
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A3R6YY05_9STRA (DNA_pol_D_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YY05_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 5.360e-6 Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 186
RF++K KSF QQ+SH+Y RL L P VR + ++ +++ + G++ VVIGT ++
Sbjct: 23 RFVLKKKSFDQQYSHMYVSRLRALEPQVRANIPQSSAHVPILPKIIDLSAGDQCVVIGTIFR 84 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig79423.15599.1 >prot_H-elongata_contig79423.15599.1 ID=prot_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEback to top mRNA from alignment at H-elongata_contig79423:251..484- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig79423.15599.1 ID=mRNA_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig79423:251..484- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig79423:251..484- >mRNA_H-elongata_contig79423.15599.1 ID=mRNA_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig79423:251..484- (Himanthalia elongata Himel1 dioecious)back to top |