prot_H-elongata_contig79414.15597.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79414.15597.1
Unique Nameprot_H-elongata_contig79414.15597.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.540e-20
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   51 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.580e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   31 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 79          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.270e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   51 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.890e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   51 LIEVIRQFHDGMRATVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.260e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   15 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 63          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5K9W7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.680e-19
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            MIAVIR+FH GMRA VR DDG  SDWF V QGLRQGC +SPLLFN+FFA
Sbjct:   31 MIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 79          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JHV5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.800e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   31 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 79          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.080e-19
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   62 LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 110          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5L6Y8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-18
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            +I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:  147 LIEVIRQFHDGMRAQVRIDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 195          
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5KBJ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.370e-18
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0
Query:    1 MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 49
            MIAVIR+FH GMRA VR DDG  SDWF V QGLRQGC +SPLLFN+FFA
Sbjct:   31 MIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBR5_9PHAE9.540e-2081.63Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCY6_9PHAE2.580e-1981.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X6_9PHAE3.270e-1981.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE3.890e-1981.63Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUC0_9PHAE5.260e-1981.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9W7_9PHAE6.680e-1977.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JHV5_9PHAE6.800e-1981.63Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L732_9PHAE7.080e-1981.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6Y8_9PHAE1.060e-1881.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBJ5_9PHAE1.370e-1877.55Reverse transcriptase domain-containing protein (F... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..49
score: 8.548

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79414contigH-elongata_contig79414:2298..2444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79414.15597.1mRNA_H-elongata_contig79414.15597.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79414 2170..2444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79414.15597.1 ID=prot_H-elongata_contig79414.15597.1|Name=mRNA_H-elongata_contig79414.15597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom