mRNA_H-elongata_contig79414.15597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79414.15597.1
Unique NamemRNA_H-elongata_contig79414.15597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5K1X6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.980e-25
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:   69 WRRRTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            W  R +LW VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   32 WVDREMLWNVLARAG-IPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-24
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R +LW+VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   15 RDMLWKVLARAG-IPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 79
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.140e-24
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R +LW+VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   35 REMLWKVLARAG-IPAKLIEVIRQFHDGMRATVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5K9W7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.000e-24
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R LLW+VL R G IP +MIAVIR+FH GMRA VR DDG  SDWF V QGLRQGC +SPLLFN+FFA
Sbjct:   15 RELLWKVLARAG-IPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 79
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5L732_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L732_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.040e-24
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R +LW+VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   46 REMLWKVLARAG-IPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 110
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5L6Y8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.340e-24
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R +LW+VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:  131 REMLWEVLARAG-IPAKLIEVIRQFHDGMRAQVRIDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 195
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5KBJ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.380e-24
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R LLW+VL R G IP +MIAVIR+FH GMRA VR DDG  SDWF V QGLRQGC +SPLLFN+FFA
Sbjct:   15 RELLWKVLARAG-IPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 79
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5KBR5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 7.340e-24
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R +LW+VL R G I  ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:   35 REMLWKVLARAG-ISAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 99
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JUC0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.150e-23
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   84 LLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            +LW+VL R G IP ++I VIRQFHDGMRA VR DDG  SDWF V QG+RQGCVLSPLLFNIFFA
Sbjct:    1 MLWKVLARTG-IPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFA 63
[Close]
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Match: A0A6H5JE46_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE46_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.120e-23
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:   78 RTLLWQVLTRIGVIPLQMIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA 275
            R LLW+VL R G IP +MIAVIR+FH GMRA VR DDG  SDWF V QGLRQGC +SPLLFN+FFA
Sbjct:  132 RELLWKVLARAG-IPAEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFA 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79414.15597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X6_9PHAE2.980e-2572.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCY6_9PHAE1.300e-2474.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE2.140e-2474.24Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K9W7_9PHAE3.000e-2472.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L732_9PHAE4.040e-2474.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6Y8_9PHAE4.340e-2474.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBJ5_9PHAE6.380e-2472.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBR5_9PHAE7.340e-2472.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUC0_9PHAE1.150e-2375.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JE46_9PHAE2.120e-2372.73Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79414contigH-elongata_contig79414:2170..2444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size276
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.6060474-UTR-H-elongata_contig79414:2169..22971622931198.6060474-UTR-H-elongata_contig79414:2169..2297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79414 2170..2297 +
1691679738.0152023-UTR-H-elongata_contig79414:2169..22971691679738.0152023-UTR-H-elongata_contig79414:2169..2297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79414 2170..2297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.624-CDS-H-elongata_contig79414:2297..24441622931198.624-CDS-H-elongata_contig79414:2297..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79414 2298..2444 +
1691679738.0252838-CDS-H-elongata_contig79414:2297..24441691679738.0252838-CDS-H-elongata_contig79414:2297..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79414 2298..2444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79414.15597.1prot_H-elongata_contig79414.15597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79414 2298..2444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79414.15597.1

>prot_H-elongata_contig79414.15597.1 ID=prot_H-elongata_contig79414.15597.1|Name=mRNA_H-elongata_contig79414.15597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MIAVIRQFHDGMRAFVRPDDGVCSDWFEVEQGLRQGCVLSPLLFNIFFA
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mRNA from alignment at H-elongata_contig79414:2170..2444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79414.15597.1 ID=mRNA_H-elongata_contig79414.15597.1|Name=mRNA_H-elongata_contig79414.15597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=275bp|location=Sequence derived from alignment at H-elongata_contig79414:2170..2444+ (Himanthalia elongata Himel1 dioecious)
CTACAGGTCTTGGAAAATATGTAAGAAATGTTCGCGATCGATCATCTTAG
AAGTCGTGGTGAGTTTTCTGGCGTCGTCGCACCCTTCTGTGGCAGGTACT
CACTCGCATCGGAGTAATACCACTGCAAATGATAGCAGTCATCCGACAAT
TCCACGATGGGATGAGAGCTTTTGTGCGACCTGATGACGGCGTCTGTTCG
GATTGGTTTGAGGTGGAGCAAGGACTACGGCAAGGATGCGTGTTATCCCC
GCTATTGTTCAACATCTTTTTCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig79414:2170..2444+

>mRNA_H-elongata_contig79414.15597.1 ID=mRNA_H-elongata_contig79414.15597.1|Name=mRNA_H-elongata_contig79414.15597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig79414:2170..2444+ (Himanthalia elongata Himel1 dioecious)
ATGATAGCAGTCATCCGACAATTCCACGATGGGATGAGAGCTTTTGTGCG
ACCTGATGACGGCGTCTGTTCGGATTGGTTTGAGGTGGAGCAAGGACTAC
GGCAAGGATGCGTGTTATCCCCGCTATTGTTCAACATCTTTTTCGCAATG
ATAGCAGTCATCCGACAATTCCACGATGGGATGAGAGCTTTTGTGCGACC
TGATGACGGCGTCTGTTCGGATTGGTTTGAGGTGGAGCAAGGACTACGGC
AAGGATGCGTGTTATCCCCGCTATTGTTCAACATCTTTTTCGCA
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