mRNA_H-elongata_contig79256.15586.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79256.15586.1
Unique NamemRNA_H-elongata_contig79256.15586.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: D8LKJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.690e-41
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +FDLVD+DGGGTVTKEELGELM+TLGIEATPEEVDLM+DEIDQ+NNGEIDFEEFVAVMSRKV+ASYT+DQVK AFKV
Sbjct:   18 FREIFDLVDRDGGGTVTKEELGELMDTLGIEATPEEVDLMIDEIDQDNNGEIDFEEFVAVMSRKVNASYTADQVKSAFKV 97          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: F0YC57_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC57_AURAN)

HSP 1 Score: 134 bits (337), Expect = 1.560e-38
Identity = 65/80 (81.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVD+DGGGT+TKEELGELM+TLGI+ATPEE+DLM+ EIDQ+NNGEIDFEEFVAVMSRKVSA+YT+DQVK+AFKV
Sbjct:   13 FREIFNLVDRDGGGTITKEELGELMDTLGIDATPEEIDLMIHEIDQDNNGEIDFEEFVAVMSRKVSATYTADQVKNAFKV 92          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A6V1LFC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LFC1_HETAK)

HSP 1 Score: 126 bits (316), Expect = 3.630e-35
Identity = 59/80 (73.75%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVD+DGGG++TKEELG+LM+TLGI+A+PEE+DLM++EIDQ+NNGEIDF EFVAVMSRKV+A+YTS+QVK+AF+V
Sbjct:   27 FREIFNLVDRDGGGSITKEELGDLMDTLGIDASPEEIDLMINEIDQDNNGEIDFNEFVAVMSRKVNATYTSEQVKNAFRV 106          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A8J2SL49_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL49_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.120e-35
Identity = 60/80 (75.00%), Postives = 75/80 (93.75%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVDKDGGGT++KEELGELMETLGI+ATPEE+DLM+ EID++NNG IDF+EFVAVMSRKVSA+YT++QV+ AF+V
Sbjct:   13 FREIFNLVDKDGGGTISKEELGELMETLGIDATPEEIDLMIAEIDEDNNGVIDFDEFVAVMSRKVSATYTAEQVRGAFRV 92          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A835YUG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.040e-33
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F LVD+DGGGT+TK ELG+LM+TLGIEAT EE++LMV EIDQ+NNGEIDF+EFVAVMSRKV+ASYT +QVK AFKV
Sbjct:   21 FREIFSLVDRDGGGTITKVELGDLMDTLGIEATAEEIELMVAEIDQDNNGEIDFQEFVAVMSRKVNASYTPEQVKGAFKV 100          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: K3X6Z4_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6Z4_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 3.150e-32
Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFK 237
            F  +F+LVD+D GG++TK ELGELM+TLGI+ +PEE+DLM+ EIDQ++NGEIDF+EFVAVMSRKV+A+YTS+QVK+AFK
Sbjct:   13 FREIFNLVDRDRGGSITKVELGELMDTLGIDTSPEEIDLMIHEIDQDSNGEIDFDEFVAVMSRKVNATYTSEQVKNAFK 91          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A812VHE1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VHE1_SYMMI)

HSP 1 Score: 117 bits (293), Expect = 3.540e-32
Identity = 55/80 (68.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVD+DGGG++TKEELGELM+TLGI+A+PEE++ M++EID + +GEIDFEEFV VMSRKV+A+YT+DQVK+AF+V
Sbjct:   13 FREIFNLVDRDGGGSITKEELGELMDTLGIDASPEELETMINEIDSSGDGEIDFEEFVEVMSRKVNATYTADQVKNAFRV 92          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A7S3H4J2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4J2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.860e-32
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVDKDGGG++TK EL +LM+TLGI+A+PEE+D M+ EIDQ+ NG+IDFEEFV VMSRKV+A+YTSDQVK AFKV
Sbjct:    9 FREIFNLVDKDGGGSITKVELADLMDTLGIDASPEEIDAMIFEIDQDGNGDIDFEEFVTVMSRKVNATYTSDQVKGAFKV 88          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: H3H091_PHYRM (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=H3H091_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 5.460e-32
Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFK 237
            F  +F+LVD+D GG++TK ELGELM+TLGI+ +PEE+DLM++EIDQ++NGEIDF+EFVAVMSRKV+A+YTS+QVK AFK
Sbjct:   13 FREIFNLVDRDRGGSITKVELGELMDTLGIDTSPEEIDLMINEIDQDSNGEIDFDEFVAVMSRKVNATYTSEQVKTAFK 91          
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Match: A0A7S1GDX7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDX7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.720e-32
Identity = 57/80 (71.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNGEIDFEEFVAVMSRKVSASYTSDQVKDAFKV 240
            F  +F+LVDKDGGGT++K+EL ELMETLGI A+PEEV+LM++E+D++ +GEIDFEEFVAVMSRKV++SYT DQVK AFK+
Sbjct:   28 FREIFNLVDKDGGGTISKDELLELMETLGINASPEEVELMINEVDEDQSGEIDFEEFVAVMSRKVNSSYTPDQVKAAFKI 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79256.15586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKJ0_ECTSI6.690e-4187.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YC57_AURAN1.560e-3881.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1LFC1_HETAK3.630e-3573.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SL49_9STRA7.120e-3575.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835YUG4_9STRA1.040e-3376.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3X6Z4_GLOUD3.150e-3270.89Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A812VHE1_SYMMI3.540e-3268.75Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
A0A7S3H4J2_9STRA3.860e-3271.25Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
H3H091_PHYRM5.460e-3270.89Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A7S1GDX7_9STRA5.720e-3271.25Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79256contigH-elongata_contig79256:2076..2806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue6e-31
Seed eggNOG ortholog2880.D8LKJ0
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-16_003140.1
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79256.15586.1prot_H-elongata_contig79256.15586.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79256 2076..2806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.515109-CDS-H-elongata_contig79256:2075..21471622931197.515109-CDS-H-elongata_contig79256:2075..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2076..2147 +
1691679737.6075616-CDS-H-elongata_contig79256:2075..21471691679737.6075616-CDS-H-elongata_contig79256:2075..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2076..2147 +
1622931197.5308897-CDS-H-elongata_contig79256:2377..24711622931197.5308897-CDS-H-elongata_contig79256:2377..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2378..2471 +
1691679737.630219-CDS-H-elongata_contig79256:2377..24711691679737.630219-CDS-H-elongata_contig79256:2377..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2378..2471 +
1622931197.5444438-CDS-H-elongata_contig79256:2711..28061622931197.5444438-CDS-H-elongata_contig79256:2711..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2712..2806 +
1691679737.6436853-CDS-H-elongata_contig79256:2711..28061691679737.6436853-CDS-H-elongata_contig79256:2711..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79256 2712..2806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79256.15586.1

>prot_H-elongata_contig79256.15586.1 ID=prot_H-elongata_contig79256.15586.1|Name=mRNA_H-elongata_contig79256.15586.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
FAAVFDLVDKDGGGTVTKEELGELMETLGIEATPEEVDLMVDEIDQNNNG
EIDFEEFVAVMSRKVSASYTSDQVKDAFKVRVASQR*
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mRNA from alignment at H-elongata_contig79256:2076..2806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79256.15586.1 ID=mRNA_H-elongata_contig79256.15586.1|Name=mRNA_H-elongata_contig79256.15586.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig79256:2076..2806+ (Himanthalia elongata Himel1 dioecious)
TTTGCGGCAGTTTTTGACCTTGTCGACAAGGATGGAGGCGGAACGGTGAC AAAGGAAGAGCTTGGAGAGCTGGTGGGTGCTTCGTATTATCTTAGCGTTA GGAACGGGCACCGAACATGCTGTTTAGTGGCGTCACTTGCCATTTCTCTT GGTCAAGCAAGAACTGTTAAATTAAAGCCTACCACCACATGAGAAAATAA AACTATTTATGACTCGATCATGCGAGTCATAGGTTATTCCATCACTCGTT TTATCTGTTCAAGTAAAAAAATCCGCATATCGATATATTTTGCCACGCTA AGATGGAAACTTTAGGTATTGAAGCTACGCCGGAGGAGGTGGATCTTATG GTTGACGAGATCGACCAAAATAATAACGGCGAAATTGACTTCGAAGGTAA GGTCCACCTAGAGAATGTTATGTTCGATGTACAAGCCACTGAAAGACAGA CGCTTGTGACTTAGACAAGCTAAAACAAACAAGTTGAGTCTGGGAGCACG CAGTGGATGCATATAACCTACGAACAAATATCTCGTGTAATTAGCCTGAT CACGACAGTACACGATTGTCATTCTCTCTCGTCTTGTGTAAAATGTACGT CATCTCACCCTTCCAACGGCTCGGAACGCTTCCCAGAATTCGTGGCGGTG ATGTCACGGAAAGTGAGTGCGTCATACACTTCAGATCAAGTTAAGGACGC GTTTAAGGTGAGAGTTGCGTCACAGCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig79256:2076..2806+

>mRNA_H-elongata_contig79256.15586.1 ID=mRNA_H-elongata_contig79256.15586.1|Name=mRNA_H-elongata_contig79256.15586.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig79256:2076..2806+ (Himanthalia elongata Himel1 dioecious)
TTTGCGGCAGTTTTTGACCTTGTCGACAAGGATGGAGGCGGAACGGTGAC
AAAGGAAGAGCTTGGAGAGCTGTTTGCGGCAGTTTTTGACCTTGTCGACA
AGGATGGAGGCGGAACGGTGACAAAGGAAGAGCTTGGAGAGCTGATGGAA
ACTTTAGGTATTGAAGCTACGCCGGAGGAGGTGGATCTTATGGTTGACGA
GATCGACCAAAATAATAACGGCGAAATTGACTTCGAAGATGGAAACTTTA
GGTATTGAAGCTACGCCGGAGGAGGTGGATCTTATGGTTGACGAGATCGA
CCAAAATAATAACGGCGAAATTGACTTCGAAGAATTCGTGGCGGTGATGT
CACGGAAAGTGAGTGCGTCATACACTTCAGATCAAGTTAAGGACGCGTTT
AAGGTGAGAGTTGCGTCACAGCGATGAAATTCGTGGCGGTGATGTCACGG
AAAGTGAGTGCGTCATACACTTCAGATCAAGTTAAGGACGCGTTTAAGGT
GAGAGTTGCGTCACAGCGATGA
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