mRNA_H-elongata_contig79232.15585.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79232.15585.1
Unique NamemRNA_H-elongata_contig79232.15585.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79232.15585.1 vs. uniprot
Match: D7FXW2_ECTSI (Phosphotransferase system component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW2_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.460e-29
Identity = 86/167 (51.50%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:    1 FEARTSQR--RTREIPFDSNRVALVGSSGGGAAAQGQLDGLSLLLLAREELFWAKIKLAAVQCLASSEPLDAAPPSTAAMPWV---DPGKEELVVAARGTPSEVNVVAAREDTKISTALQAGA--KSVAASVLSRGTDDSDVVGCHATSLPPLHGLVTISCDVNGVN 480
            F  RTS R   T +    + RVALVGSSGGGAAAQGQ DG +LL LA++EL  A I LAAVQ +A +EPLD A PS+AA  WV     G E LVVAA GT  +VN+ A +ED KI+ AL+ G      A +   RG + +      +  + PLHGLV ISCDV+GVN
Sbjct:  208 FTERTSSRCYDTDDAASFAKRVALVGSSGGGAAAQGQFDGPALLRLAKKELERAGIHLAAVQFVACAEPLDLANPSSAATLWVAGTGEGDEALVVAAEGTLLDVNMAARKEDVKIAAALREGCGRHDDAPTQSPRGANTAT-----SPKMLPLHGLVAISCDVHGVN 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79232.15585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXW2_ECTSI7.460e-2951.50Phosphotransferase system component n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79232contigH-elongata_contig79232:1289..2336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue4e-25
Seed eggNOG ortholog2880.D7FXW2
EggNOG OGs2E0F2@1,2S7VP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size480
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79232.15585.1prot_H-elongata_contig79232.15585.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79232 1289..2336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.4479864-CDS-H-elongata_contig79232:1288..14881622931197.4479864-CDS-H-elongata_contig79232:1288..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 1289..1488 -
1691679737.5774546-CDS-H-elongata_contig79232:1288..14881691679737.5774546-CDS-H-elongata_contig79232:1288..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 1289..1488 -
1622931197.4673219-CDS-H-elongata_contig79232:1820..19991622931197.4673219-CDS-H-elongata_contig79232:1820..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 1821..1999 -
1691679737.5864038-CDS-H-elongata_contig79232:1820..19991691679737.5864038-CDS-H-elongata_contig79232:1820..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 1821..1999 -
1622931197.478532-CDS-H-elongata_contig79232:2235..23361622931197.478532-CDS-H-elongata_contig79232:2235..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 2236..2336 -
1691679737.5965717-CDS-H-elongata_contig79232:2235..23361691679737.5965717-CDS-H-elongata_contig79232:2235..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79232 2236..2336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79232.15585.1

>prot_H-elongata_contig79232.15585.1 ID=prot_H-elongata_contig79232.15585.1|Name=mRNA_H-elongata_contig79232.15585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
FEARTSQRRTREIPFDSNRVALVGSSGGGAAAQGQLDGLSLLLLAREELF
WAKIKLAAVQCLASSEPLDAAPPSTAAMPWVDPGKEELVVAARGTPSEVN
VVAAREDTKISTALQAGAKSVAASVLSRGTDDSDVVGCHATSLPPLHGLV
TISCDVNGVN
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mRNA from alignment at H-elongata_contig79232:1289..2336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79232.15585.1 ID=mRNA_H-elongata_contig79232.15585.1|Name=mRNA_H-elongata_contig79232.15585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig79232:1289..2336- (Himanthalia elongata Himel1 dioecious)
TTCGAGGCGCGCACGAGTCAGAGGAGGACCAGAGAGATCCCTTTCGACAG
CAATAGGGTTGCTCTCGTGGGATCTAGTGGAGGCGGAGCGGCCGCCCAGG
GGTGAGGGAGAGCGATAATCTACGGACCTTATACCATCGGCCCTCGCACC
GCTCGAGGCAGCCTCGAAACCCCTACTGTTTTTCCCATCTGTCGGTGTGG
GACGATTTCTCTATTTCTTAGCCCAACCGCGGTCACCACATTTTTTGGTT
CCCCTCCACTCGTCCGTCTCGTCTCCACGGGCATACCCTACACTATCCTA
CACTATACCCTTCTTCCTCACGGTAGCGAGAGATCAGCCAGCTCGACGGG
CTGTCCCTCCTTCTCCTGGCTAGGGAGGAGCTGTTCTGGGCCAAGATCAA
GCTGGCGGCGGTGCAGTGCTTGGCGAGCTCGGAGCCCCTGGATGCCGCCC
CGCCGAGCACTGCCGCGATGCCGTGGGTCGACCCGGGCAAAGAAGAGCTT
GTCGTGGCTGCACGAGGTGAGAGATGATAGAGGTGACTTGTGAGGTGCTC
GGGGGATGGGAGGGGGGGGGGAGGGGGGGATAATTTGGCTGCCCTCTCTG
TACGCCTCCTTCCTTACTATGAATACTTTAGTGTCGTCTGCCGCCACGGC
TAAAGGTTCCGAGAACACTAGTAATATGAAATTTTAGTCGCCGGTGCCCA
GCTATAGCCCAGTCCTCCCTTCCGTAGACAAGGGATCAGCTAGAGTCGTC
TTCGCGTGCCACCACTGCCAGTCGTGCGTCTCGACAATCTCCTCGCTTCT
CTCGCATACCTACTCAGACAAATAATCCTCTGACCTGGGTTTTCACAGGG
ACGCCCTCTGAGGTGAACGTCGTGGCGGCGCGGGAGGACACGAAGATCTC
CACAGCGCTCCAAGCGGGCGCCAAGAGCGTCGCGGCGTCGGTCCTCTCCC
GTGGTACCGACGATAGCGACGTGGTGGGGTGTCACGCGACATCGCTCCCC
CCGCTGCACGGGCTGGTGACTATCTCGTGTGACGTCAACGGCGTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig79232:1289..2336-

>mRNA_H-elongata_contig79232.15585.1 ID=mRNA_H-elongata_contig79232.15585.1|Name=mRNA_H-elongata_contig79232.15585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig79232:1289..2336- (Himanthalia elongata Himel1 dioecious)
TTCGAGGCGCGCACGAGTCAGAGGAGGACCAGAGAGATCCCTTTCGACAG
CAATAGGGTTGCTCTCGTGGGATCTAGTGGAGGCGGAGCGGCCGCCCAGG
GTTCGAGGCGCGCACGAGTCAGAGGAGGACCAGAGAGATCCCTTTCGACA
GCAATAGGGTTGCTCTCGTGGGATCTAGTGGAGGCGGAGCGGCCGCCCAG
GGCCAGCTCGACGGGCTGTCCCTCCTTCTCCTGGCTAGGGAGGAGCTGTT
CTGGGCCAAGATCAAGCTGGCGGCGGTGCAGTGCTTGGCGAGCTCGGAGC
CCCTGGATGCCGCCCCGCCGAGCACTGCCGCGATGCCGTGGGTCGACCCG
GGCAAAGAAGAGCTTGTCGTGGCTGCACGAGCCAGCTCGACGGGCTGTCC
CTCCTTCTCCTGGCTAGGGAGGAGCTGTTCTGGGCCAAGATCAAGCTGGC
GGCGGTGCAGTGCTTGGCGAGCTCGGAGCCCCTGGATGCCGCCCCGCCGA
GCACTGCCGCGATGCCGTGGGTCGACCCGGGCAAAGAAGAGCTTGTCGTG
GCTGCACGAGGGACGCCCTCTGAGGTGAACGTCGTGGCGGCGCGGGAGGA
CACGAAGATCTCCACAGCGCTCCAAGCGGGCGCCAAGAGCGTCGCGGCGT
CGGTCCTCTCCCGTGGTACCGACGATAGCGACGTGGTGGGGTGTCACGCG
ACATCGCTCCCCCCGCTGCACGGGCTGGTGACTATCTCGTGTGACGTCAA
CGGCGTCAACGGACGCCCTCTGAGGTGAACGTCGTGGCGGCGCGGGAGGA
CACGAAGATCTCCACAGCGCTCCAAGCGGGCGCCAAGAGCGTCGCGGCGT
CGGTCCTCTCCCGTGGTACCGACGATAGCGACGTGGTGGGGTGTCACGCG
ACATCGCTCCCCCCGCTGCACGGGCTGGTGACTATCTCGTGTGACGTCAA
CGGCGTCAAC
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