mRNA_H-elongata_contig7914.15570.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE) HSP 1 Score: 241 bits (615), Expect = 3.110e-80 Identity = 116/131 (88.55%), Postives = 124/131 (94.66%), Query Frame = 1
Query: 1 MPEEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEP 393
M +E +PKRNVY+GGLEEQVNEE+LHAAFVPFGDIVEVN+PKDHVANTHRGFGFVEFE E DAKAA++NMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDD AKLAGDELE D+LEP
Sbjct: 1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADSLEP 131
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.220e-52 Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1
Query: 19 PKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVKAS 405
P+ +Y+GGLEE VNEE+LHAAF+PFGD+VEV IP++ + T+RGFGFVE+E E DA AA+ENMDGAEL G+VLRVN AKP+KHKLGA AVWSAD+W+KN + EGD+ + D++ D LEPV AS
Sbjct: 7 PRCTLYVGGLEENVNEELLHAAFIPFGDLVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKN-MAEGDETINMTADDMPQPDALEPVAAS 134
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA) HSP 1 Score: 157 bits (396), Expect = 6.700e-47 Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 7 EEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 339
E+P K+ VY+GGL+E+V EEVLHAAF+PFGDIVEVNIP+D + +RGFGFV+FEDE+DA AA+ENMDGAEL+G+VLR N A+P+KH+LGA VWSA+DW+++ + +G+
Sbjct: 8 EKPNKKKVVYVGGLDEKVVEEVLHAAFIPFGDIVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGE 118
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC) HSP 1 Score: 153 bits (387), Expect = 1.620e-45 Identity = 77/127 (60.63%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 MPEEPKPKRN---VYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELE 372
M +PKPK + VY+GGL+EQ EE+LHAAF+PFGDIVEVNIPKD NT RGFGFV FE DA AA++NM+GAEL G+VL+ N A+PM+HKLGA+ VWS D+W+K+ L E D GD+LE
Sbjct: 1 MDPKPKPKADKSIVYVGGLDEQCTEEMLHAAFIPFGDIVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLAEDKDL----GDQLE 123
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.630e-44 Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 22 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVKAS 405
KR++Y+GGLEE+ EE+LHAAF+PFG++VEV IPKD N +RGFGFVEF+++ DA A++NMDG+EL G+VLRVN AKP+ HKLGA AVWS+D+W+K L E D A D D+L P+ A+
Sbjct: 8 KRSLYVGGLEEEATEELLHAAFIPFGNVVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLADAQDD----TDSLVPMDAA 131
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.890e-42 Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 22 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVK 399
KR +Y+GGLEEQV+EE+LHAAF+PFG+I EV IPKD NT+RGFGF+E+ ++ DA A++NMDGAEL G+VLRVN AKPMK KLGA VWS ++W +N+L E + D E D L P++
Sbjct: 15 KRTLYVGGLEEQVDEELLHAAFIPFGNINEVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQNSLKED----QALADAQEDADDLTPME 136
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI) HSP 1 Score: 136 bits (343), Expect = 3.910e-39 Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 31 VYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 339
VY+GGL+ VNEE LHAAF+PFGDI EVNIPKD N HRGFGFV+FED DA AA+ENM+GAEL+GKVL+ N AKPM KL AVW+A++W N+L D
Sbjct: 1 VYVGGLDSGVNEETLHAAFIPFGDIREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWLSNSLKTDD 102
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A397G7Y2_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G7Y2_9GLOM) HSP 1 Score: 130 bits (328), Expect = 1.400e-36 Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 22 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVA-NTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELE 372
K +Y+GGL++QVNE++LHAAFVPFGDIVE+ IP D + N HRGFGF+EFE+ DA+ A++NM+ +ELYGKV++VN A+PM+ K G+ AVWS D W + ++ D K++ DE E
Sbjct: 11 KTTIYVGGLDDQVNEKILHAAFVPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQEAIDNMNLSELYGKVIKVNLARPMRIKEGSVRAVWSEDAWLQKYALKSADP-KVSYDEYE 127
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A5J4Y598_9CHLO (Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y598_9CHLO) HSP 1 Score: 131 bits (330), Expect = 1.910e-36 Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 19 PKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLG----AHTAVWS-ADDWYKNTLVE 333
PK +Y+GGLEE VNE +LH+AF+PFGDI +VNIP DH HRGFGF+E+E + DA A++NM AELYG+VLR N A+PMK K G +H AVW+ ADDWY+ E
Sbjct: 20 PKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDHATGKHRGFGFIEYEAKDDAADAIDNMHNAELYGRVLRTNYAQPMKIKGGDKGFSHQAVWADADDWYERAEAE 129
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A397TW91_9GLOM (RRM domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397TW91_9GLOM) HSP 1 Score: 131 bits (329), Expect = 2.200e-36 Identity = 60/108 (55.56%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 22 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVA-NTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDD 342
K +Y+GGL++QVNE++LHAAF+PFGDIVE+ IP D + N HRGFGF+EFE+ DA+AA++NM+ +ELYGKV++VN A+PM+ K G+ AVWS D W + ++ D
Sbjct: 11 KTTIYVGGLDDQVNEQILHAAFIPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQAAIDNMNLSELYGKVIKVNLARPMRIKEGSMRAVWSEDAWLQKYALQSAD 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7914.15570.1 >prot_H-elongata_contig7914.15570.1 ID=prot_H-elongata_contig7914.15570.1|Name=mRNA_H-elongata_contig7914.15570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MPEEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRback to top mRNA from alignment at H-elongata_contig7914:1621..3394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7914.15570.1 ID=mRNA_H-elongata_contig7914.15570.1|Name=mRNA_H-elongata_contig7914.15570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1774bp|location=Sequence derived from alignment at H-elongata_contig7914:1621..3394+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7914:1621..3394+ >mRNA_H-elongata_contig7914.15570.1 ID=mRNA_H-elongata_contig7914.15570.1|Name=mRNA_H-elongata_contig7914.15570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig7914:1621..3394+ (Himanthalia elongata Himel1 dioecious)back to top |