prot_H-elongata_contig7914.15570.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7914.15570.1
Unique Nameprot_H-elongata_contig7914.15570.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 3.110e-80
Identity = 116/131 (88.55%), Postives = 124/131 (94.66%), Query Frame = 0
Query:    1 MPEEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEP 131
            M +E +PKRNVY+GGLEEQVNEE+LHAAFVPFGDIVEVN+PKDHVANTHRGFGFVEFE E DAKAA++NMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDD AKLAGDELE  D+LEP
Sbjct:    1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADSLEP 131          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.220e-52
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 0
Query:    7 PKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVKAS 135
            P+  +Y+GGLEE VNEE+LHAAF+PFGD+VEV IP++  + T+RGFGFVE+E E DA AA+ENMDGAEL G+VLRVN AKP+KHKLGA  AVWSAD+W+KN + EGD+   +  D++   D LEPV AS
Sbjct:    7 PRCTLYVGGLEENVNEELLHAAFIPFGDLVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKN-MAEGDETINMTADDMPQPDALEPVAAS 134          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.700e-47
Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = 0
Query:    3 EEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 113
            E+P  K+ VY+GGL+E+V EEVLHAAF+PFGDIVEVNIP+D   + +RGFGFV+FEDE+DA AA+ENMDGAEL+G+VLR N A+P+KH+LGA   VWSA+DW+++ + +G+
Sbjct:    8 EKPNKKKVVYVGGLDEKVVEEVLHAAFIPFGDIVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGE 118          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC)

HSP 1 Score: 153 bits (387), Expect = 1.620e-45
Identity = 77/127 (60.63%), Postives = 95/127 (74.80%), Query Frame = 0
Query:    1 MPEEPKPKRN---VYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELE 124
            M  +PKPK +   VY+GGL+EQ  EE+LHAAF+PFGDIVEVNIPKD   NT RGFGFV FE   DA AA++NM+GAEL G+VL+ N A+PM+HKLGA+  VWS D+W+K+ L E  D     GD+LE
Sbjct:    1 MDPKPKPKADKSIVYVGGLDEQCTEEMLHAAFIPFGDIVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLAEDKDL----GDQLE 123          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.630e-44
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 0
Query:    8 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVKAS 135
            KR++Y+GGLEE+  EE+LHAAF+PFG++VEV IPKD   N +RGFGFVEF+++ DA  A++NMDG+EL G+VLRVN AKP+ HKLGA  AVWS+D+W+K  L E  D A    D     D+L P+ A+
Sbjct:    8 KRSLYVGGLEEEATEELLHAAFIPFGNVVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLADAQDD----TDSLVPMDAA 131          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.890e-42
Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 0
Query:    8 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVK 133
            KR +Y+GGLEEQV+EE+LHAAF+PFG+I EV IPKD   NT+RGFGF+E+ ++ DA  A++NMDGAEL G+VLRVN AKPMK KLGA   VWS ++W +N+L E     +   D  E  D L P++
Sbjct:   15 KRTLYVGGLEEQVDEELLHAAFIPFGNINEVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQNSLKED----QALADAQEDADDLTPME 136          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI)

HSP 1 Score: 136 bits (343), Expect = 3.910e-39
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 0
Query:   11 VYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 113
            VY+GGL+  VNEE LHAAF+PFGDI EVNIPKD   N HRGFGFV+FED  DA AA+ENM+GAEL+GKVL+ N AKPM  KL    AVW+A++W  N+L   D
Sbjct:    1 VYVGGLDSGVNEETLHAAFIPFGDIREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWLSNSLKTDD 102          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A397G7Y2_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G7Y2_9GLOM)

HSP 1 Score: 130 bits (328), Expect = 1.400e-36
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 0
Query:    8 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVA-NTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDAAKLAGDELE 124
            K  +Y+GGL++QVNE++LHAAFVPFGDIVE+ IP D  + N HRGFGF+EFE+  DA+ A++NM+ +ELYGKV++VN A+PM+ K G+  AVWS D W +   ++  D  K++ DE E
Sbjct:   11 KTTIYVGGLDDQVNEKILHAAFVPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQEAIDNMNLSELYGKVIKVNLARPMRIKEGSVRAVWSEDAWLQKYALKSADP-KVSYDEYE 127          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A5J4Y598_9CHLO (Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y598_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 1.910e-36
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 0
Query:    7 PKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLG----AHTAVWS-ADDWYKNTLVE 111
            PK  +Y+GGLEE VNE +LH+AF+PFGDI +VNIP DH    HRGFGF+E+E + DA  A++NM  AELYG+VLR N A+PMK K G    +H AVW+ ADDWY+    E
Sbjct:   20 PKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDHATGKHRGFGFIEYEAKDDAADAIDNMHNAELYGRVLRTNYAQPMKIKGGDKGFSHQAVWADADDWYERAEAE 129          
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Match: A0A397TW91_9GLOM (RRM domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397TW91_9GLOM)

HSP 1 Score: 131 bits (329), Expect = 2.200e-36
Identity = 60/108 (55.56%), Postives = 84/108 (77.78%), Query Frame = 0
Query:    8 KRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVA-NTHRGFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDD 114
            K  +Y+GGL++QVNE++LHAAF+PFGDIVE+ IP D  + N HRGFGF+EFE+  DA+AA++NM+ +ELYGKV++VN A+PM+ K G+  AVWS D W +   ++  D
Sbjct:   11 KTTIYVGGLDDQVNEQILHAAFIPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQAAIDNMNLSELYGKVIKVNLARPMRIKEGSMRAVWSEDAWLQKYALQSAD 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7914.15570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWM4_9PHAE3.110e-8088.55RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z2R3_9STRA1.220e-5263.57Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib... [more]
A0A7S2V6A5_9STRA6.700e-4763.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CRH6_NANGC1.620e-4560.63RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2H1G4_9STRA2.630e-4457.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C0W9_9STRA2.890e-4257.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812XSP9_SYMMI3.910e-3965.05PPIE protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A397G7Y2_9GLOM1.400e-3654.24RRM domain-containing protein n=1 Tax=Diversispora... [more]
A0A5J4Y598_9CHLO1.910e-3658.18Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax... [more]
A0A397TW91_9GLOM2.200e-3655.56RRM domain-containing protein n=2 Tax=Gigaspora Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..83
e-value: 6.0E-25
score: 98.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..81
e-value: 4.6E-22
score: 77.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..87
score: 20.423
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..97
e-value: 1.2E-28
score: 101.7
NoneNo IPR availablePANTHERPTHR13798:SF11coord: 10..87
NoneNo IPR availablePANTHERPTHR13798RNA BINDING MOTIF RBM PROTEIN -RELATEDcoord: 10..87
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7914contigH-elongata_contig7914:1621..3394 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7914.15570.1mRNA_H-elongata_contig7914.15570.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7914 1621..3394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7914.15570.1 ID=prot_H-elongata_contig7914.15570.1|Name=mRNA_H-elongata_contig7914.15570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MPEEPKPKRNVYIGGLEEQVNEEVLHAAFVPFGDIVEVNIPKDHVANTHR
GFGFVEFEDERDAKAAVENMDGAELYGKVLRVNAAKPMKHKLGAHTAVWS
ADDWYKNTLVEGDDAAKLAGDELEAVDTLEPVKAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf