mRNA_H-elongata_contig78799.15548.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI) HSP 1 Score: 201 bits (512), Expect = 4.610e-60 Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDN----------NSKVVLFPGNHGEY 345
+GDRQV+VR YTAAFNL+G +Q+KLVG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDV+TLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFED S+VV+F GNHGEY
Sbjct: 412 IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGXXXXXXAVKGESRVVVFQGNHGEY 536
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.780e-58 Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNN----------SKVVLFPGNHGEY 345
+GDR+V+VR YTAAFNL+G +Q+KLVG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDV+TLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFED S+VV+F GNHGEY
Sbjct: 585 IGDRKVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGGGGGDGNVKGESRVVVFQGNHGEY 709
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3M0ZDF0_9CHLR (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M0ZDF0_9CHLR) HSP 1 Score: 161 bits (408), Expect = 6.190e-49 Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G RQV+ R Y A FN G Q+KLVGN+SGGERNRVHLA++LK G NVLLLDEPTNDLDV TLR+LEE ++ FAG LI+SHDRWFLDRV +H +AFE S+VV FPG + EY
Sbjct: 6 LGGRQVNSRAYCARFNFSGSDQQKLVGNLSGGERNRVHLARILKSGANVLLLDEPTNDLDVHTLRALEEGLENFAGCALIISHDRWFLDRVATHILAFE-GESQVVWFPGTYSEY 119
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A2N2K314_9DELT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-10 TaxID=2013737 RepID=A0A2N2K314_9DELT) HSP 1 Score: 161 bits (408), Expect = 1.020e-48 Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G RQ++ R Y + FN G Q+K VG +SGGERNRVHLA++LKEG NVLLLDEPTNDLDV TLR+LE+A++ FAG V+++SHDRWFLDR+C+H +AFE SKV+ F GN+ EY
Sbjct: 21 IGSRQINSRAYVSRFNFSGTDQQKKVGTLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTLRALEDALENFAGCVVVISHDRWFLDRICTHILAFE-GESKVLFFDGNYSEY 134
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7S3TQF7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQF7_EMIHU) HSP 1 Score: 159 bits (403), Expect = 1.760e-47 Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G+R+VS+R Y AAFNL+G QEKLV N+SGGER RVHLAK L+ G N+LLLDEPTNDLDV+TLRSLEEAI FAGS +IVSHDRWFLDRVC HT+AF D F G+ +Y
Sbjct: 63 VGEREVSMRAYVAAFNLRGTMQEKLVSNLSGGERGRVHLAKTLRRGCNLLLLDEPTNDLDVDTLRSLEEAIGAFAGSAVIVSHDRWFLDRVCDHTLAF-DAAGGADFFEGSISDY 176
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A1V4XR23_9DELT (Putative ABC transporter ATP-binding protein n=1 Tax=Syntrophus sp. PtaB.Bin001 TaxID=1811710 RepID=A0A1V4XR23_9DELT) HSP 1 Score: 158 bits (399), Expect = 3.140e-47 Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G RQ++ R Y A FN G Q+K VG++SGGERNRVHLA++LKEG NVLLLDEPTNDLDV T+R+LEEA++ FAG +++SHDRWFLDR+ +H +AFE S+VV F GN+ EY
Sbjct: 30 LGSRQINSRAYVARFNFSGTDQQKKVGSLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTMRALEEALENFAGCAVVISHDRWFLDRIATHILAFE-GESRVVWFEGNYSEY 143
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7X9JVD1_9DELT (ATP-binding cassette domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X9JVD1_9DELT) HSP 1 Score: 159 bits (402), Expect = 6.600e-47 Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G+RQ++ R Y A FN G Q+K VG +SGGERNRVHLA++LKEG N LLLDEPTNDLDV TLR+LE+A++ FAG V+++SHDRWFLDR+C+H +AFE +SKV F GN+ EY
Sbjct: 90 IGNRQINSRAYVARFNFSGTDQQKKVGALSGGERNRVHLARMLKEGGNGLLLDEPTNDLDVNTLRALEDALESFAGCVVVISHDRWFLDRICTHILAFE-GDSKVFFFDGNYSEY 203
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3C1GLT0_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3C1GLT0_9BACT) HSP 1 Score: 157 bits (396), Expect = 8.980e-47 Identity = 73/115 (63.48%), Postives = 95/115 (82.61%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G RQ++ R Y A+FN KG Q+K VG++SGGERNRVHLAK+L+ NV LLDEPTNDLDV+TLR+LE+A+ GFAG VL++SHDRWFLDR+ +H +AFED+ S+VV F GN+ +Y
Sbjct: 30 LGTRQIASRAYVASFNFKGSDQQKRVGDLSGGERNRVHLAKMLQSAGNVFLLDEPTNDLDVDTLRALEDALLGFAGCVLVISHDRWFLDRIATHMLAFEDD-SQVVWFEGNYQDY 143
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7S2DH67_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DH67_9EUKA) HSP 1 Score: 158 bits (399), Expect = 1.220e-46 Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+G R+V+VR Y AAFNL+G QEK VG++SGGER RVHLAK L+EG N+LLLDEP+NDLDV+TLRSLEEA+ FAGS +++SHDRWFLDRVC+HT+AFE + V + G EY
Sbjct: 91 LGGREVNVRAYVAAFNLRGSMQEKSVGSLSGGERGRVHLAKTLREGCNLLLLDEPSNDLDVDTLRSLEEALTDFAGSAVVISHDRWFLDRVCTHTLAFE--HDAVQFYEGGVSEY 203
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3M1FV59_9CHLR (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FV59_9CHLR) HSP 1 Score: 155 bits (391), Expect = 2.180e-46 Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 1
Query: 1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
+GDR V+ R Y A F G Q+K VG +SGGERNRVHLAK+LK G NVLLLDEP+NDLDV TLR+LE+A++ FAG+ LI+SHDRWFLDR+ +H +AFE S+ V FPGN+ EY
Sbjct: 2 LGDRLVNSRAYVARFTFSGADQQKKVGALSGGERNRVHLAKMLKSGANVLLLDEPSNDLDVNTLRALEDALETFAGTALIISHDRWFLDRIATHILAFE-GESRAVWFPGNYSEY 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78799.15548.1 >prot_H-elongata_contig78799.15548.1 ID=prot_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLback to top mRNA from alignment at H-elongata_contig78799:1665..2855- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78799.15548.1 ID=mRNA_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-elongata_contig78799:1665..2855- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78799:1665..2855- >mRNA_H-elongata_contig78799.15548.1 ID=mRNA_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig78799:1665..2855- (Himanthalia elongata Himel1 dioecious)back to top |