mRNA_H-elongata_contig78799.15548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78799.15548.1
Unique NamemRNA_H-elongata_contig78799.15548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 4.610e-60
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDN----------NSKVVLFPGNHGEY 345
            +GDRQV+VR YTAAFNL+G +Q+KLVG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDV+TLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFED            S+VV+F GNHGEY
Sbjct:  412 IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGXXXXXXAVKGESRVVVFQGNHGEY 536          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.780e-58
Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNN----------SKVVLFPGNHGEY 345
            +GDR+V+VR YTAAFNL+G +Q+KLVG MSGGERNRVHLAKVLK+GHNVLLLDEPTNDLDV+TLRSLEEAI+GFAGSVLIVSHDRWFLDRVCSHTIAFED            S+VV+F GNHGEY
Sbjct:  585 IGDRKVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQGHNVLLLDEPTNDLDVDTLRSLEEAINGFAGSVLIVSHDRWFLDRVCSHTIAFEDGGGGGDGNVKGESRVVVFQGNHGEY 709          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3M0ZDF0_9CHLR (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M0ZDF0_9CHLR)

HSP 1 Score: 161 bits (408), Expect = 6.190e-49
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G RQV+ R Y A FN  G  Q+KLVGN+SGGERNRVHLA++LK G NVLLLDEPTNDLDV TLR+LEE ++ FAG  LI+SHDRWFLDRV +H +AFE   S+VV FPG + EY
Sbjct:    6 LGGRQVNSRAYCARFNFSGSDQQKLVGNLSGGERNRVHLARILKSGANVLLLDEPTNDLDVHTLRALEEGLENFAGCALIISHDRWFLDRVATHILAFE-GESQVVWFPGTYSEY 119          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A2N2K314_9DELT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-10 TaxID=2013737 RepID=A0A2N2K314_9DELT)

HSP 1 Score: 161 bits (408), Expect = 1.020e-48
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G RQ++ R Y + FN  G  Q+K VG +SGGERNRVHLA++LKEG NVLLLDEPTNDLDV TLR+LE+A++ FAG V+++SHDRWFLDR+C+H +AFE   SKV+ F GN+ EY
Sbjct:   21 IGSRQINSRAYVSRFNFSGTDQQKKVGTLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTLRALEDALENFAGCVVVISHDRWFLDRICTHILAFE-GESKVLFFDGNYSEY 134          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7S3TQF7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TQF7_EMIHU)

HSP 1 Score: 159 bits (403), Expect = 1.760e-47
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G+R+VS+R Y AAFNL+G  QEKLV N+SGGER RVHLAK L+ G N+LLLDEPTNDLDV+TLRSLEEAI  FAGS +IVSHDRWFLDRVC HT+AF D       F G+  +Y
Sbjct:   63 VGEREVSMRAYVAAFNLRGTMQEKLVSNLSGGERGRVHLAKTLRRGCNLLLLDEPTNDLDVDTLRSLEEAIGAFAGSAVIVSHDRWFLDRVCDHTLAF-DAAGGADFFEGSISDY 176          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A1V4XR23_9DELT (Putative ABC transporter ATP-binding protein n=1 Tax=Syntrophus sp. PtaB.Bin001 TaxID=1811710 RepID=A0A1V4XR23_9DELT)

HSP 1 Score: 158 bits (399), Expect = 3.140e-47
Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G RQ++ R Y A FN  G  Q+K VG++SGGERNRVHLA++LKEG NVLLLDEPTNDLDV T+R+LEEA++ FAG  +++SHDRWFLDR+ +H +AFE   S+VV F GN+ EY
Sbjct:   30 LGSRQINSRAYVARFNFSGTDQQKKVGSLSGGERNRVHLARMLKEGANVLLLDEPTNDLDVNTMRALEEALENFAGCAVVISHDRWFLDRIATHILAFE-GESRVVWFEGNYSEY 143          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7X9JVD1_9DELT (ATP-binding cassette domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X9JVD1_9DELT)

HSP 1 Score: 159 bits (402), Expect = 6.600e-47
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G+RQ++ R Y A FN  G  Q+K VG +SGGERNRVHLA++LKEG N LLLDEPTNDLDV TLR+LE+A++ FAG V+++SHDRWFLDR+C+H +AFE  +SKV  F GN+ EY
Sbjct:   90 IGNRQINSRAYVARFNFSGTDQQKKVGALSGGERNRVHLARMLKEGGNGLLLDEPTNDLDVNTLRALEDALESFAGCVVVISHDRWFLDRICTHILAFE-GDSKVFFFDGNYSEY 203          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3C1GLT0_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3C1GLT0_9BACT)

HSP 1 Score: 157 bits (396), Expect = 8.980e-47
Identity = 73/115 (63.48%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G RQ++ R Y A+FN KG  Q+K VG++SGGERNRVHLAK+L+   NV LLDEPTNDLDV+TLR+LE+A+ GFAG VL++SHDRWFLDR+ +H +AFED+ S+VV F GN+ +Y
Sbjct:   30 LGTRQIASRAYVASFNFKGSDQQKRVGDLSGGERNRVHLAKMLQSAGNVFLLDEPTNDLDVDTLRALEDALLGFAGCVLVISHDRWFLDRIATHMLAFEDD-SQVVWFEGNYQDY 143          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A7S2DH67_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DH67_9EUKA)

HSP 1 Score: 158 bits (399), Expect = 1.220e-46
Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +G R+V+VR Y AAFNL+G  QEK VG++SGGER RVHLAK L+EG N+LLLDEP+NDLDV+TLRSLEEA+  FAGS +++SHDRWFLDRVC+HT+AFE  +  V  + G   EY
Sbjct:   91 LGGREVNVRAYVAAFNLRGSMQEKSVGSLSGGERGRVHLAKTLREGCNLLLLDEPSNDLDVDTLRSLEEALTDFAGSAVVISHDRWFLDRVCTHTLAFE--HDAVQFYEGGVSEY 203          
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Match: A0A3M1FV59_9CHLR (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1FV59_9CHLR)

HSP 1 Score: 155 bits (391), Expect = 2.180e-46
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVLLLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFEDNNSKVVLFPGNHGEY 345
            +GDR V+ R Y A F   G  Q+K VG +SGGERNRVHLAK+LK G NVLLLDEP+NDLDV TLR+LE+A++ FAG+ LI+SHDRWFLDR+ +H +AFE   S+ V FPGN+ EY
Sbjct:    2 LGDRLVNSRAYVARFTFSGADQQKKVGALSGGERNRVHLAKMLKSGANVLLLDEPSNDLDVNTLRALEDALETFAGTALIISHDRWFLDRIATHILAFE-GESRAVWFPGNYSEY 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78799.15548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX01_ECTSI4.610e-6079.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQX9_9PHAE2.780e-5878.40ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A3M0ZDF0_9CHLR6.190e-4966.96ATP-binding cassette domain-containing protein (Fr... [more]
A0A2N2K314_9DELT1.020e-4863.48Energy-dependent translational throttle protein Et... [more]
A0A7S3TQF7_EMIHU1.760e-4767.83Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A1V4XR23_9DELT3.140e-4762.61Putative ABC transporter ATP-binding protein n=1 T... [more]
A0A7X9JVD1_9DELT6.600e-4763.48ATP-binding cassette domain-containing protein n=1... [more]
A0A3C1GLT0_9BACT8.980e-4763.48Energy-dependent translational throttle protein Et... [more]
A0A7S2DH67_9EUKA1.220e-4665.22Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A3M1FV59_9CHLR2.180e-4663.48ATP-binding cassette domain-containing protein (Fr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78799contigH-elongata_contig78799:1665..2855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.9e-49
Seed eggNOG ortholog2880.D7FX01
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78799.15548.1prot_H-elongata_contig78799.15548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78799 1665..2855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.042744-CDS-H-elongata_contig78799:1664..17031622931193.042744-CDS-H-elongata_contig78799:1664..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 1665..1703 -
1691679736.0116546-CDS-H-elongata_contig78799:1664..17031691679736.0116546-CDS-H-elongata_contig78799:1664..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 1665..1703 -
1622931193.0630908-CDS-H-elongata_contig78799:1745..19281622931193.0630908-CDS-H-elongata_contig78799:1745..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 1746..1928 -
1691679736.0251994-CDS-H-elongata_contig78799:1745..19281691679736.0251994-CDS-H-elongata_contig78799:1745..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 1746..1928 -
1622931193.0816379-CDS-H-elongata_contig78799:2732..28551622931193.0816379-CDS-H-elongata_contig78799:2732..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 2733..2855 -
1691679736.0340452-CDS-H-elongata_contig78799:2732..28551691679736.0340452-CDS-H-elongata_contig78799:2732..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78799 2733..2855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78799.15548.1

>prot_H-elongata_contig78799.15548.1 ID=prot_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MGDRQVSVRTYTAAFNLKGVAQEKLVGNMSGGERNRVHLAKVLKEGHNVL
LLDEPTNDLDVETLRSLEEAIDGFAGSVLIVSHDRWFLDRVCSHTIAFED
NNSKVVLFPGNHGEY
back to top

mRNA from alignment at H-elongata_contig78799:1665..2855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78799.15548.1 ID=mRNA_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-elongata_contig78799:1665..2855- (Himanthalia elongata Himel1 dioecious)
ATGGGCGACAGACAAGTTAGCGTGCGAACGTATACGGCTGCGTTCAATCT TAAGGGTGTGGCGCAAGAGAAATTGGTGGGCAACATGAGTGGGGGCGAGC GCAACAGGGTGCACCTCGCCAAGGTGAAGCGATGTCATTGATGACAAACG GGAGATTGGAAGGAGTAATCGGAAACGAGTAGAGTTTGACACCGTCGTGA CGCGCTTGTCCGGCGGTCGGGTGCTCGATAATGTTGCCGCGAGGCATGGC GAAAGACTACCGTGCCACCTTCGGTAGCTGCACCCAGCACAAGACTGTAC TATGCCCCCCTCCCCCCCCATCCCCCCTAAACTTAATGATTTCGTCAAAG ATCCCCCAAAAGTCTCGATGGAGCAAATTACGATCCAGATTTGCAACAAT ATTTCCACTTTTGGGGGGAGGTAAAAGGCGATCGATGCATTAGTTGTAAA ATTGGACTTGAGCTCAAACGATCCTCATTTGGGGAGAAGGTGGTGGGGGG ATCGGGGATTCTCATCGCTAATATCTGCAGACGATCGTCGCGCGTGCCCT ACTCACATCGTGGTCCAGAAAAATATTCGCGATGCTTTAATAATATTAAA ACGCAAGATCTTTCTCGCTCAGCTTTCGCGGTTCCTCTTTTAAGTCGGCA TTCTAAGAAATAATATAGGGTTTCCACATGTTACAAACAATGCACGAAAA ACATGCGTTAAAGTGAACAGGAACCTAAACTAGTCCGCCACTGAGAGACT ATTTTAGGTTCCTTTTCAATTTAGTGCATTTTTCTCATGCACTTTTTATA ACACGTGGAAACGTTATAATGAAACTCTAATAATAGCTTAACGCCGAACT CTAATACGGTAATAGAATACGCCGTGCACCAGCGAGCATCTGGCCCCACC CAAACGCGTCGTCACCCGATCCGTCAGGTCCTCAAGGAGGGGCACAATGT ACTATTGTTGGACGAGCCCACGAACGACCTCGACGTGGAAACCCTTCGAA GCCTCGAGGAGGCCATCGACGGCTTCGCGGGCAGCGTGCTCATCGTGTCG CACGACCGCTGGTTCCTCGACCGTGTCTGCTCCCACACGATCGCCTTCGA GGACAATAACGTCAAAGACGGCGGGGCTGGAAGCGGAGTCGTGAAGGCTG AGAGCAAGGTAGTGCTCTTCCCTGGTAACCACGGAGAGTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig78799:1665..2855-

>mRNA_H-elongata_contig78799.15548.1 ID=mRNA_H-elongata_contig78799.15548.1|Name=mRNA_H-elongata_contig78799.15548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig78799:1665..2855- (Himanthalia elongata Himel1 dioecious)
ATGGGCGACAGACAAGTTAGCGTGCGAACGTATACGGCTGCGTTCAATCT
TAAGGGTGTGGCGCAAGAGAAATTGGTGGGCAACATGAGTGGGGGCGAGC
GCAACAGGGTGCACCTCGCCAAGATGGGCGACAGACAAGTTAGCGTGCGA
ACGTATACGGCTGCGTTCAATCTTAAGGGTGTGGCGCAAGAGAAATTGGT
GGGCAACATGAGTGGGGGCGAGCGCAACAGGGTGCACCTCGCCAAGGTCC
TCAAGGAGGGGCACAATGTACTATTGTTGGACGAGCCCACGAACGACCTC
GACGTGGAAACCCTTCGAAGCCTCGAGGAGGCCATCGACGGCTTCGCGGG
CAGCGTGCTCATCGTGTCGCACGACCGCTGGTTCCTCGACCGTGTCTGCT
CCCACACGATCGCCTTCGAGGACAATAACGTCCTCAAGGAGGGGCACAAT
GTACTATTGTTGGACGAGCCCACGAACGACCTCGACGTGGAAACCCTTCG
AAGCCTCGAGGAGGCCATCGACGGCTTCGCGGGCAGCGTGCTCATCGTGT
CGCACGACCGCTGGTTCCTCGACCGTGTCTGCTCCCACACGATCGCCTTC
GAGGACAATAACAGCAAGGTAGTGCTCTTCCCTGGTAACCACGGAGAGTA
CAGCAAGGTAGTGCTCTTCCCTGGTAACCACGGAGAGTAC
back to top