mRNA_H-elongata_contig78444.15514.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78444.15514.1
Unique NamemRNA_H-elongata_contig78444.15514.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: D8LGQ4_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.630e-62
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 SALPTHSTSSTQMWYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            SAL   +  + + WYP S+SMMPSPDDPPEVDPRRKDPD+P++ PPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDP+KDITLYINSPGGSVS+GMAIYDA+Q
Sbjct:   43 SALSMKAGPNPKTWYPHSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQ 165          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A835YSZ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.750e-52
Identity = 92/104 (88.46%), Postives = 100/104 (96.15%), Query Frame = 1
Query:   61 MMPSPDDPP-EVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            MMP+PDDPP EVDPRR+DPDKPS+ PPVRMPVVDVGG QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLA++DP+KDITLYINSPGGSVS+GMAIYD +Q
Sbjct:   60 MMPNPDDPPPEVDPRRRDPDKPSEIPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLASEDPSKDITLYINSPGGSVSAGMAIYDTMQ 163          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: F0YIP9_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP9_AURAN)

HSP 1 Score: 165 bits (418), Expect = 1.300e-48
Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = 1
Query:   61 MMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            MMPSPDDPPEVDPRR+DP+KPS  PPVRMP+VD G  QMDVISRLL+DRILLLG+ V+DEVANVLVAQLLYLANDDP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct:   47 MMPSPDDPPEVDPRRRDPEKPS-IPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQ 148          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S1D863_CYCTE (ATP-dependent Clp protease proteolytic subunit (Fragment) n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D863_CYCTE)

HSP 1 Score: 152 bits (383), Expect = 1.340e-44
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query:   73 PDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            PDDP PEVDPRRKDPD      PVRMPV+D G  QMDVISRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP KDIT+YINSPGGSVS+GMAIYD +Q
Sbjct:   51 PDDPQPEVDPRRKDPDDKPPPSPVRMPVIDTGDGQMDVISRLLKDRILLLGQSVDDEVANVLVAQLLYLANEDPGKDITMYINSPGGSVSAGMAIYDTMQ 150          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S3NLA1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.380e-44
Identity = 86/106 (81.13%), Postives = 93/106 (87.74%), Query Frame = 1
Query:   55 LSMMPSPDDPPEVDPRRKDPD-KPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            + MM  P+  PEVDPRR+DPD KP   PPVRMPVVD G  QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DP KDITLY+NSPGGSVS+GMAIYDA+Q
Sbjct:   38 IKMMSEPE--PEVDPRRRDPDTKP--VPPVRMPVVDSGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPTKDITLYVNSPGGSVSAGMAIYDAMQ 139          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S2UVQ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.220e-44
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1
Query:   76 DDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            ++PPEVDPRR++PD+    PP  MPVVDVG  QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct:   72 EEPPEVDPRRRNPDESPTRPPPLMPVVDVGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQ 169          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7R9ZQJ7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQJ7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.970e-43
Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   73 PDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQVL 375
            PD+P PE+DPRRKDPD+  + PPVRMPVVD    QMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP+KDITLYINSPGGSVS+GMAIYD +Q +
Sbjct:   43 PDEPAPEIDPRRKDPDERPNVPPVRMPVVDTEKGQMDVVSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPDKDITLYINSPGGSVSAGMAIYDTMQYI 144          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A6T5QFA7_HETAK (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QFA7_HETAK)

HSP 1 Score: 150 bits (380), Expect = 6.690e-43
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   40 WYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            W P+   MMP  ++PPE+DPRRK+PD+    PP  MPVVDVGG QMDVISRLL+DRILLLGQQVNDEVAN+LVAQLLYLA +DP KDITLYINSPGGSVS+G+AI+D +Q
Sbjct:   43 WSPK---MMPD-EEPPEIDPRRKNPDEAPVRPPPMMPVVDVGGGQMDVISRLLQDRILLLGQQVNDEVANLLVAQLLYLAQEDPTKDITLYINSPGGSVSAGLAIFDTMQ 148          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: K0SHF4_THAOC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHF4_THAOC)

HSP 1 Score: 150 bits (379), Expect = 1.390e-42
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   31 TQMWYPQSLSMMPSPDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            ++M YP   +MMP P DP PEVDPRRK+PD+     PVRMPVVD  GSQ DVISRLL+DRI+LLGQ V+DE+ANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct:   54 SRMAYP---TMMPPPTDPDPEVDPRRKNPDEQPSRGPVRMPVVDSDGSQKDVISRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQ 164          
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S2R2M4_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.010e-42
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1
Query:   85 PEVDPRRKDPDKPSDTPPVRMPVVDVG-GSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
            PEVDPRRK+PD      PVRMPV+D+G G QMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct:   34 PEVDPRRKNPDDQPPPAPVRMPVIDLGDGKQMDVVSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQ 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGQ4_ECTSI5.630e-6284.55ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A835YSZ8_9STRA1.750e-5288.46ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YIP9_AURAN1.300e-4884.47ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A7S1D863_CYCTE1.340e-4481.00ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A7S3NLA1_9STRA3.380e-4481.13ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2UVQ8_9STRA7.220e-4481.63ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7R9ZQJ7_9STRA1.970e-4378.43ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6T5QFA7_HETAK6.690e-4373.64ATP-dependent Clp protease proteolytic subunit n=1... [more]
K0SHF4_THAOC1.390e-4273.68ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2R2M4_9STRA2.010e-4280.21ATP-dependent Clp protease proteolytic subunit (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78444contigH-elongata_contig78444:1541..2891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue8.3e-50
Seed eggNOG ortholog2880.D8LGQ4
Preferred nameCLPP4
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionchloroplast clp protease P
Ec32 orthologEc-07_005420.1
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78444.15514.1prot_H-elongata_contig78444.15514.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78444 1541..2891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931189.225382-CDS-H-elongata_contig78444:1540..16471622931189.225382-CDS-H-elongata_contig78444:1540..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 1541..1647 +
1691679734.3930717-CDS-H-elongata_contig78444:1540..16471691679734.3930717-CDS-H-elongata_contig78444:1540..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 1541..1647 +
1622931189.242247-CDS-H-elongata_contig78444:2043..21641622931189.242247-CDS-H-elongata_contig78444:2043..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 2044..2164 +
1691679734.4063709-CDS-H-elongata_contig78444:2043..21641691679734.4063709-CDS-H-elongata_contig78444:2043..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 2044..2164 +
1622931189.2587361-CDS-H-elongata_contig78444:2744..28911622931189.2587361-CDS-H-elongata_contig78444:2744..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 2745..2891 +
1691679734.421675-CDS-H-elongata_contig78444:2744..28911691679734.421675-CDS-H-elongata_contig78444:2744..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78444 2745..2891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78444.15514.1

>prot_H-elongata_contig78444.15514.1 ID=prot_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
SALPTHSTSSTQMWYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMP
VVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKD
ITLYINSPGGSVSSGMAIYDAIQVL
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mRNA from alignment at H-elongata_contig78444:1541..2891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78444.15514.1 ID=mRNA_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1351bp|location=Sequence derived from alignment at H-elongata_contig78444:1541..2891+ (Himanthalia elongata Himel1 dioecious)
TCTGCTCTCCCCACACACTCTACCTCGTCGACCCAGATGTGGTACCCGCA ATCGTTGTCCATGATGCCCAGCCCGGACGATCCTCCTGAGGTGGACCCTC GCCGCAAGTGAGCCGCTTTCCTCGTCGGCCATACGCTTTAAACCGTTGGT GCGTTAGACCATTCCGCTGGCAAATTATACCTAAGCGCCAAAAAAATAAA AAATTAGGAAACCACACGGCGCGAGATGTACGTATTAGTTTTTCCTGTGA CACTACCGGAATGACCTAGCGCTGTGGCAGGATCAATATGTAGGGGAGGG TGCCACCTCCCCGAACAATTTCCACGCCTCGTGCCGCGCCGCGCCGGTCG CATGGGTAAAAAAACGCGCTAGGCGAAAGCCCGCCGCTGTGCACTGTATC TCTCGTTCTCTTTCTCTTTAGCAGGCGCTCTCTTCGAATGACGAACACAA TGTTTTTTGCGTGTTGGGGGGGGGGCTATTTTTCGTCTCTTCAAATATTT CAGGGATCCAGACAAGCCATCAGACACCCCCCCGGTGCGAATGCCCGTAG TGGACGTGGGGGGGAGCCAGATGGACGTCATCTCGAGACTGTTGAAGGAC CGTATCCTCCTACTGGGACAACAGGTAGGAGCAAGTGGGAGGGCACACGA ACTCGACACGCCGGCGCGTGTACTGCTGCGCTTGTCGGCGTAAGAAAACG GTGATAAAAAATGTGCTGTACGAGGTGTTGTCTCTGTTGAAAACAAAAAC AAAATGAGAAAACATTTCGCGGGGGCTGAGAACGAATAAAAACAAAACTG CACCAGCGAAAGTAAAATATAGTGTAGTGTTTCGCGACGCCGCTGCGTCA GGGGTGCGATGTTTCGCCGTGTTGATCGAAGCGCGCCAATTCAAAGCTCA CGATGCATACCTACGCACCAGGTGCTGTTCTCTGGACAGACACCAACGCC GCGTGACAGGATTGAATACCCCCACGGGGGATAATCGATTAGTGTGCCCT CCTCGTGTTGTTCTATAACGACGCACATAGCAGCAATCACAACGGCATAT CCTCTTGGAGATATGGCTGTACGATTCCCAACGCCTAGGGTAGCTTGCAA CGCTTCTATTTTTCTGTCTTGCCGATATAAACGGGGAGCGATATTCTCAT CCTTGGGTCACCTGGCGCGTGGCCACTGATGTGGCGTGAGTTTCCTTCAA TCAGGTTAATGATGAGGTCGCCAACGTGTTGGTGGCACAGCTACTTTACC TCGCTAACGACGATCCCAACAAGGACATCACATTGTACATCAACTCTCCC GGCGGCTCCGTGTCGTCGGGAATGGCGATCTACGATGCCATACAGGTGCT T
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Coding sequence (CDS) from alignment at H-elongata_contig78444:1541..2891+

>mRNA_H-elongata_contig78444.15514.1 ID=mRNA_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig78444:1541..2891+ (Himanthalia elongata Himel1 dioecious)
TCTGCTCTCCCCACACACTCTACCTCGTCGACCCAGATGTGGTACCCGCA
ATCGTTGTCCATGATGCCCAGCCCGGACGATCCTCCTGAGGTGGACCCTC
GCCGCAATCTGCTCTCCCCACACACTCTACCTCGTCGACCCAGATGTGGT
ACCCGCAATCGTTGTCCATGATGCCCAGCCCGGACGATCCTCCTGAGGTG
GACCCTCGCCGCAAGGATCCAGACAAGCCATCAGACACCCCCCCGGTGCG
AATGCCCGTAGTGGACGTGGGGGGGAGCCAGATGGACGTCATCTCGAGAC
TGTTGAAGGACCGTATCCTCCTACTGGGACAACAGGGATCCAGACAAGCC
ATCAGACACCCCCCCGGTGCGAATGCCCGTAGTGGACGTGGGGGGGAGCC
AGATGGACGTCATCTCGAGACTGTTGAAGGACCGTATCCTCCTACTGGGA
CAACAGGTTAATGATGAGGTCGCCAACGTGTTGGTGGCACAGCTACTTTA
CCTCGCTAACGACGATCCCAACAAGGACATCACATTGTACATCAACTCTC
CCGGCGGCTCCGTGTCGTCGGGAATGGCGATCTACGATGCCATACAGGTG
CTTGTTAATGATGAGGTCGCCAACGTGTTGGTGGCACAGCTACTTTACCT
CGCTAACGACGATCCCAACAAGGACATCACATTGTACATCAACTCTCCCG
GCGGCTCCGTGTCGTCGGGAATGGCGATCTACGATGCCATACAGGTGCTT
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