mRNA_H-elongata_contig78444.15514.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: D8LGQ4_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ4_ECTSI) HSP 1 Score: 200 bits (508), Expect = 5.630e-62 Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 SALPTHSTSSTQMWYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
SAL + + + WYP S+SMMPSPDDPPEVDPRRKDPD+P++ PPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDP+KDITLYINSPGGSVS+GMAIYDA+Q
Sbjct: 43 SALSMKAGPNPKTWYPHSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQ 165
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A835YSZ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ8_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.750e-52 Identity = 92/104 (88.46%), Postives = 100/104 (96.15%), Query Frame = 1
Query: 61 MMPSPDDPP-EVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
MMP+PDDPP EVDPRR+DPDKPS+ PPVRMPVVDVGG QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLA++DP+KDITLYINSPGGSVS+GMAIYD +Q
Sbjct: 60 MMPNPDDPPPEVDPRRRDPDKPSEIPPVRMPVVDVGGGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLASEDPSKDITLYINSPGGSVSAGMAIYDTMQ 163
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: F0YIP9_AURAN (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP9_AURAN) HSP 1 Score: 165 bits (418), Expect = 1.300e-48 Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = 1
Query: 61 MMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
MMPSPDDPPEVDPRR+DP+KPS PPVRMP+VD G QMDVISRLL+DRILLLG+ V+DEVANVLVAQLLYLANDDP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct: 47 MMPSPDDPPEVDPRRRDPEKPS-IPPVRMPMVDTGDGQMDVISRLLRDRILLLGRGVDDEVANVLVAQLLYLANDDPTKDITLYINSPGGSVSAGMAIYDTMQ 148
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S1D863_CYCTE (ATP-dependent Clp protease proteolytic subunit (Fragment) n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D863_CYCTE) HSP 1 Score: 152 bits (383), Expect = 1.340e-44 Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query: 73 PDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
PDDP PEVDPRRKDPD PVRMPV+D G QMDVISRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP KDIT+YINSPGGSVS+GMAIYD +Q
Sbjct: 51 PDDPQPEVDPRRKDPDDKPPPSPVRMPVIDTGDGQMDVISRLLKDRILLLGQSVDDEVANVLVAQLLYLANEDPGKDITMYINSPGGSVSAGMAIYDTMQ 150
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S3NLA1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA1_9STRA) HSP 1 Score: 154 bits (388), Expect = 3.380e-44 Identity = 86/106 (81.13%), Postives = 93/106 (87.74%), Query Frame = 1
Query: 55 LSMMPSPDDPPEVDPRRKDPD-KPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
+ MM P+ PEVDPRR+DPD KP PPVRMPVVD G QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DP KDITLY+NSPGGSVS+GMAIYDA+Q
Sbjct: 38 IKMMSEPE--PEVDPRRRDPDTKP--VPPVRMPVVDSGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPTKDITLYVNSPGGSVSAGMAIYDAMQ 139
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S2UVQ8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ8_9STRA) HSP 1 Score: 154 bits (388), Expect = 7.220e-44 Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1
Query: 76 DDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
++PPEVDPRR++PD+ PP MPVVDVG QMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct: 72 EEPPEVDPRRRNPDESPTRPPPLMPVVDVGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQ 169
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7R9ZQJ7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQJ7_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.970e-43 Identity = 80/102 (78.43%), Postives = 91/102 (89.22%), Query Frame = 1
Query: 73 PDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQVL 375
PD+P PE+DPRRKDPD+ + PPVRMPVVD QMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP+KDITLYINSPGGSVS+GMAIYD +Q +
Sbjct: 43 PDEPAPEIDPRRKDPDERPNVPPVRMPVVDTEKGQMDVVSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPDKDITLYINSPGGSVSAGMAIYDTMQYI 144
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A6T5QFA7_HETAK (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QFA7_HETAK) HSP 1 Score: 150 bits (380), Expect = 6.690e-43 Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 1
Query: 40 WYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
W P+ MMP ++PPE+DPRRK+PD+ PP MPVVDVGG QMDVISRLL+DRILLLGQQVNDEVAN+LVAQLLYLA +DP KDITLYINSPGGSVS+G+AI+D +Q
Sbjct: 43 WSPK---MMPD-EEPPEIDPRRKNPDEAPVRPPPMMPVVDVGGGQMDVISRLLQDRILLLGQQVNDEVANLLVAQLLYLAQEDPTKDITLYINSPGGSVSAGLAIFDTMQ 148
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: K0SHF4_THAOC (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHF4_THAOC) HSP 1 Score: 150 bits (379), Expect = 1.390e-42 Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 1
Query: 31 TQMWYPQSLSMMPSPDDP-PEVDPRRKDPDKPSDTPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
++M YP +MMP P DP PEVDPRRK+PD+ PVRMPVVD GSQ DVISRLL+DRI+LLGQ V+DE+ANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct: 54 SRMAYP---TMMPPPTDPDPEVDPRRKNPDEQPSRGPVRMPVVDSDGSQKDVISRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDTMQ 164
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Match: A0A7S2R2M4_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M4_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.010e-42 Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1
Query: 85 PEVDPRRKDPDKPSDTPPVRMPVVDVG-GSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPNKDITLYINSPGGSVSSGMAIYDAIQ 369
PEVDPRRK+PD PVRMPV+D+G G QMDV+SRLLKDRILLLGQ V+DEVANVLVAQLLYLAN+DP KDITLYINSPGGSVS+GMAIYD +Q
Sbjct: 34 PEVDPRRKNPDDQPPPAPVRMPVIDLGDGKQMDVVSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQ 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78444.15514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78444.15514.1 >prot_H-elongata_contig78444.15514.1 ID=prot_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp SALPTHSTSSTQMWYPQSLSMMPSPDDPPEVDPRRKDPDKPSDTPPVRMPback to top mRNA from alignment at H-elongata_contig78444:1541..2891+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78444.15514.1 ID=mRNA_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1351bp|location=Sequence derived from alignment at H-elongata_contig78444:1541..2891+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78444:1541..2891+ >mRNA_H-elongata_contig78444.15514.1 ID=mRNA_H-elongata_contig78444.15514.1|Name=mRNA_H-elongata_contig78444.15514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig78444:1541..2891+ (Himanthalia elongata Himel1 dioecious)back to top |