mRNA_H-elongata_contig10181.155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10181.155.1
Unique NamemRNA_H-elongata_contig10181.155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.930e-21
Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECT---LSTNGSTS--FSSGGSSPLALSDDSSRISFCVNPSDPCYN 384
             ENNNE C YDGGDCC CT ++     YS   +A   C+DPSA C D + V +      G +  +G+G CD++NNNEGC YD GDCCECT   L T+  T   F +G  +  A          C++P+ PC N
Sbjct:   68 QENNNEICGYDGGDCCECTCVNAWDDDYS--CAANSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFA----------CIDPNAPCVN 188          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.720e-17
Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISF-CVNPSDPCYN 384
            M+NNNE C YDGGDCC CT  +D P+      S+F  C+DP+A C D ++  +           IG+G CD DNNNE C YD GDCCECT  +             L   D + R +F CV+P+ PC +
Sbjct:  226 MDNNNEACAYDGGDCCECT-CEDTPNNRCGRWSSFA-CIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCES-------------LEDDDWACRNNFACVDPNAPCVD 339          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.980e-17
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    7 NNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQS--TCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISFCVNPSDPCYN 384
            NNNE C YDGGDCC CT + D  + +     A   C+DP+A C D + V   +   C+   IE +GDG CD  NNNE C YD GDCCECT  ++         S+ + +  D S    C++P+  C++
Sbjct:  220 NNNEQCGYDGGDCCECTCVVDWSAEFGCTEFA---CIDPTAPCVDDDDVTADALENCM---IEYLGDGYCDTYNNNEICDYDGGDCCECTCGSD---------STDVLVGSDCSDF-VCIDPTASCFD 331          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.130e-15
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    7 NNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQS--TCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISFCVNPSDPCYN 384
            NNNE C YDGGDCC CT + D  + +     A   C+DP+A C D + V   +   C+   +E +GDG CD  NN E C YD GDCCECT           G  S   L         C++P+  C++
Sbjct:   71 NNNEQCGYDGGDCCECTCVVDWSAEFGCTEFA---CIDPTAPCVDDDDVTADALENCM---MEYLGDGYCDTYNNIEICDYDGGDCCECTC----------GSDSTDVLDXXXXXXXXCIDPTASCFD 182          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 3
Query:  390 NLGNGICDEENNNDGCDYDKGDCCPCTCV----SGNYPCG-SHGFSCLDPNVTSLE 542
            ++G+GICDEENNN+ C YD GDCC CTCV    +G Y     +GF+C+DPN +  +
Sbjct:   15 SVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNASCFD 70          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-10
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3
Query:  393 LGNGICDEENNNDGCDYDKGDCCPCTCVSGNYPCGSHGFSCLDPNVTS 536
            +G+G CD  NNN+ CD+D GDCC CTCVSG Y CG + F C DP+V++
Sbjct:  318 IGDGHCDYYNNNEECDWDGGDCCACTCVSGYYTCGYYTFDCEDPSVST 365          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9
Identity = 46/140 (32.86%), Postives = 61/140 (43.57%), Query Frame = 1
Query:    4 ENNNEGCLYDGGDCCVCTRID----------DGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFSSGGSSPLALSDDSSRISF-CVNPSDPCYNLE 390
            +NN E C +DGGDCCV + +D          D   P S   +  L C+DP              TC    +EDIG+GRCD + NNE C +D GDCC                 +P  L +      + C +P+ P Y LE
Sbjct:  180 DNNVEECSFDGGDCCVDSCVDAKYTCGVTYRDQCDPQSSDCNLRLICLDPVYKTPAPTPTLFNRTCP---VEDIGNGRCDDEYNNEFCLFDGGDCC-----------------APSCLGESCGAYEYDCKDPNTPEYGLE 299          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-9
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  363 PKRPLLQS*NLGNGICDEENNNDGCDYDKGDCCPCTC-VSGNYPCGSHGFSCLDPNVTSLE 542
            P   L     +G+G+CD++NNN+ C +D GDCC CTC  +  Y CG++ + CLDP+ T+ E
Sbjct:  323 PSLSLCDDLRIGDGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLDPSGTTCE 383          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 9.930e-9
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREAVALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECT 270
            + NN+  C YDGGDCC C+ ID GP  Y   S  F  C+DP   C +    A ++T  +     + DG CD  NN   C YD GDCCEC+
Sbjct:   99 LVNNHPSCDYDGGDCCECSCID-GPD-YGCGSIGFA-CLDPD--CGNTTETAPENTTCEESW--MNDGYCDSSNNYPSCDYDGGDCCECS 181          
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  393 LGNGICDEENNNDGCDYDKGDCCPCTCVSG---NYPCGS-HG-FSCLDPNVT 533
            +GNG CDEENNN+ C YD GDCC CTC S    +Y C S HG F+C DPN +
Sbjct:   11 MGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNAS 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10181.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G0S4_ECTSI2.930e-2142.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE3.720e-1741.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE6.980e-1739.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI1.130e-1538.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI82_ECTSI1.100e-1051.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP4_9PHAE2.070e-1058.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB5_9PHAE1.110e-932.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G136_ECTSI1.160e-944.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI9.930e-943.33Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FL19_ECTSI1.050e-859.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10181contigH-elongata_contig10181:1073..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.9e-09
Seed eggNOG ortholog2880.D7FTI5
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size581
Cds size579
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.4534845-CDS-H-elongata_contig10181:1072..14621622929557.4534845-CDS-H-elongata_contig10181:1072..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10181 1073..1462 +
1691679069.150956-CDS-H-elongata_contig10181:1072..14621691679069.150956-CDS-H-elongata_contig10181:1072..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10181 1073..1462 +
1622929557.468534-CDS-H-elongata_contig10181:1718..19071622929557.468534-CDS-H-elongata_contig10181:1718..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10181 1719..1907 +
1691679069.1610818-CDS-H-elongata_contig10181:1718..19071691679069.1610818-CDS-H-elongata_contig10181:1718..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10181 1719..1907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10181.155.1prot_H-elongata_contig10181.155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10181 1073..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10181.155.1

>prot_H-elongata_contig10181.155.1 ID=prot_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MENNNEGCLYDGGDCCVCTRIDDGPSPYSDISSAFLFCVDPSASCYDREA
VALQSTCIDGDIEDIGDGRCDKDNNNEGCQYDDGDCCECTLSTNGSTSFS
SGGSSPLALSDDSSRISFCVNPSDPCYNLETLETVSAMKKTTTTGVTTTR
VTAAPAHASLETILVVVTGFLAWTQTLPAWNHISAWNHRPITR
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mRNA from alignment at H-elongata_contig10181:1073..1907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10181.155.1 ID=mRNA_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at H-elongata_contig10181:1073..1907+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAACAATAATGAAGGGTGTCTTTATGACGGCGGAGATTGCTGTGT GTGCACCCGCATCGACGATGGACCTTCTCCGTACAGCGACATCAGCTCAG CCTTCCTATTCTGTGTAGACCCGAGCGCCTCGTGTTACGATCGCGAAGCA GTCGCCTTACAATCGACATGTATCGATGGGGATATTGAAGATATTGGAGA CGGTCGTTGTGATAAAGACAACAACAACGAGGGGTGTCAATATGACGATG GTGATTGCTGTGAATGTACTCTTAGCACGAATGGGTCTACATCATTTTCC AGTGGTGGTTCCTCTCCCCTCGCACTCTCTGATGATAGTTCCCGCATATC ATTTTGCGTTAACCCAAGCGACCCTTGTTACAATCTTGAAGCAGTCAACT TGCAATCGACCTGCAAGAGCGAAAATATTGACTGGATACAGAATGGTATC TGCAATGATGCGAACAACAACGAAGAGTGCCTCTATGATGGAGGGGATTG TTGTGAGTGTACCCGCTATGACGATGAGGCTTCTTCCGATAGCGACCCCA GGGCATCCTTCTACTTCTGCGTTGACCCAAGCGCCTCATGCTACGATGGC GCCGCGGTCGCCTTACAATCAAAATGCATCGATGGGGATTTTGAAGACCT TGGAAACGGTATCTGCGATGAAGAAAACAACAACGACGGGTGTGACTACG ACAAGGGTGACTGCTGCCCCTGCACATGCGTCTCTGGAAACTATCCTTGT GGTAGTCACGGGTTTTCTTGCTTGGACCCAAACGTTACCAGCTTGGAACC ATATATCTGCGTGGAATCACCGCCCAATAACGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig10181:1073..1907+

>mRNA_H-elongata_contig10181.155.1 ID=mRNA_H-elongata_contig10181.155.1|Name=mRNA_H-elongata_contig10181.155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig10181:1073..1907+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAACAATAATGAAGGGTGTCTTTATGACGGCGGAGATTGCTGTGT
GTGCACCCGCATCGACGATGGACCTTCTCCGTACAGCGACATCAGCTCAG
CCTTCCTATTCTGTGTAGACCCGAGCGCCTCGTGTTACGATCGCGAAGCA
GTCGCCTTACAATCGACATGTATCGATGGGGATATTGAAGATATTGGAGA
CGGTCGTTGTGATAAAGACAACAACAACGAGGGGTGTCAATATGACGATG
GTGATTGCTGTGAATGTACTCTTAGCACGAATGGGTCTACATCATTTTCC
AGTGGTGGTTCCTCTCCCCTCGCACTCTCTGATGATAGTTCCCGCATATC
ATTTTGCGTTAACCCAAGCGACCCTTGTTACAATCTTGAAATGGAGAACA
ATAATGAAGGGTGTCTTTATGACGGCGGAGATTGCTGTGTGTGCACCCGC
ATCGACGATGGACCTTCTCCGTACAGCGACATCAGCTCAGCCTTCCTATT
CTGTGTAGACCCGAGCGCCTCGTGTTACGATCGCGAAGCAGTCGCCTTAC
AATCGACATGTATCGATGGGGATATTGAAGATATTGGAGACGGTCGTTGT
GATAAAGACAACAACAACGAGGGGTGTCAATATGACGATGGTGATTGCTG
TGAATGTACTCTTAGCACGAATGGGTCTACATCATTTTCCAGTGGTGGTT
CCTCTCCCCTCGCACTCTCTGATGATAGTTCCCGCATATCATTTTGCGTT
AACCCAAGCGACCCTTGTTACAATCTTGAAACCTTGGAAACGGTATCTGC
GATGAAGAAAACAACAACGACGGGTGTGACTACGACAAGGGTGACTGCTG
CCCCTGCACATGCGTCTCTGGAAACTATCCTTGTGGTAGTCACGGGTTTT
CTTGCTTGGACCCAAACGTTACCAGCTTGGAACCATATATCTGCGTGGAA
TCACCGCCCAATAACGCGTACCTTGGAAACGGTATCTGCGATGAAGAAAA
CAACAACGACGGGTGTGACTACGACAAGGGTGACTGCTGCCCCTGCACAT
GCGTCTCTGGAAACTATCCTTGTGGTAGTCACGGGTTTTCTTGCTTGGAC
CCAAACGTTACCAGCTTGGAACCATATATCTGCGTGGAATCACCGCCCAA
TAACGCGT
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