prot_H-elongata_contig120017.1547.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig120017.1547.1
Unique Name	prot_H-elongata_contig120017.1547.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	102

Homology

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.160e-56
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 96
            MGKVIRGQRKGKGGIF SHTRLRKG VK RKLDYAERHGYIKGV+KD+IHEPGRGAPLAK+QFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK ++
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASL 96

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.360e-48
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 93
            MGKVIRGQRKGKG +F SHT+ RKGAVKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA + F+NPY+FK+D EL+VAVEGMYSG FIYCGKK
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKK 93

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.360e-48
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 93
            MGKVIRG RKG+G +F SHTRLRKG VK RKLDYAERHGYIKGV+K+IIHEP RGAP+AKIQFQNPY++K+DNELIVA EGMY+G FIYCGKK
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKK 93

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A6G1SEE1_9ACAR (60S ribosomal protein L8 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SEE1_9ACAR)

HSP 1 Score: 155 bits (393), Expect = 3.440e-46
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 96
            MG+VIRGQRKG GGIFKSH + RKGA K R +DYAERHGYIKGV+K+IIH+PGRGAPLAK+ F++PYKF+ + EL +A EGMYSGQFIYCG+K  M
Sbjct:    1 MGRVIRGQRKGAGGIFKSHNKHRKGAAKLRPVDYAERHGYIKGVVKEIIHDPGRGAPLAKVDFRDPYKFRHNKELFIAAEGMYSGQFIYCGRKATM 96

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.140e-46
Identity = 69/93 (74.19%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 93
            MGKV+RG RKGKG +FKSHTRLRKG  K R+LD++ER GY+KG++K+I+HEPGRGAPLA+IQFQNPYK+++DNEL+V  EGMYSGQFI+CGKK
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKK 93

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A8B8QVU7_9MYRT (60S ribosomal protein L8-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QVU7_9MYRT)

HSP 1 Score: 155 bits (391), Expect = 4.060e-45
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 96
            MG+VIRGQRKG GGIFKSH + RKGA K R +D+AERHGYIKGVIK+IIH+PGRGAPLA++ F++PYKF+ + EL +A EGMYSGQFIYCG+K AM
Sbjct:    1 MGRVIRGQRKGAGGIFKSHNKHRKGAAKLRPVDFAERHGYIKGVIKEIIHDPGRGAPLARVDFRDPYKFRHNKELFIAAEGMYSGQFIYCGRKAAM 96

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: UPI0014259132 (60S ribosomal protein L8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259132)

HSP 1 Score: 154 bits (390), Expect = 5.440e-45
Identity = 67/96 (69.79%), Postives = 85/96 (88.54%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 96
            MG+VIRGQRKG G +FKSH + RKG  + R +D+AERHGYIKG++KDIIH+PGRGAPLA++QF++PYKFK+ NEL++A EGMY+GQFIYCGKK A+
Sbjct:    1 MGRVIRGQRKGAGSVFKSHNKHRKGPARLRTIDFAERHGYIKGIVKDIIHDPGRGAPLARVQFRDPYKFKKRNELMIAAEGMYTGQFIYCGKKAAL 96

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A6S9KZ63_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9KZ63_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.590e-45
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 96
            MGK ++ QRKGKGGIFK+H R RKGAVK R LDYAE+HGYI+GVIK+IIH+PGRGAP+AK+QF N Y++KRD EL++A EGMY+GQFIYCGKK  +
Sbjct:    1 MGKYVQAQRKGKGGIFKAHIRTRKGAVKLRPLDYAEKHGYIRGVIKEIIHDPGRGAPVAKVQFLNAYRYKRDTELMIATEGMYTGQFIYCGKKATL 96

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.220e-44
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 93
            MGKV RGQRKGKG IFKSHTRLR G VK R LDYAER G+ KGVIKD +HEPGRGAP+AK+QF N Y++KRDN L VAVEGMY+GQF+YCGKK
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKK 112

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BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: L8H292_ACACA (Ribosomal proteins l2, RNA binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H292_ACACA)

HSP 1 Score: 152 bits (384), Expect = 4.490e-44
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0

Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 93
            MG+VIRGQRKGKG +FKSHT  RKGA + RKLD+AER GYIKGV+KDIIH+PGRGAPLAK+QF+NPYK+  D EL VA EGM++GQF+YCGKK
Sbjct:    1 MGRVIRGQRKGKGSVFKSHTFHRKGAAQHRKLDFAERKGYIKGVVKDIIHDPGRGAPLAKVQFKNPYKYGLDKELFVAAEGMHTGQFVYCGKK 93

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot

BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8U3_ECTSI	1.160e-56	90.63	Ribosomal_L2_C domain-containing protein n=3 Tax=E...	[more]
A0A7S2V227_9STRA	1.360e-48	80.65	Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep...	[more]
A0A835ZD66_9STRA	1.360e-48	81.72	Translation protein SH3-like domain-containing pro...	[more]
A0A6G1SEE1_9ACAR	3.440e-46	72.92	60S ribosomal protein L8 (Fragment) n=1 Tax=Aceria...	[more]
A0A7R9UAP5_9STRA	7.140e-46	74.19	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A8B8QVU7_9MYRT	4.060e-45	72.92	60S ribosomal protein L8-like n=1 Tax=Rhodamnia ar...	[more]
UPI0014259132	5.440e-45	69.79	60S ribosomal protein L8 n=1 Tax=Anneissia japonic...	[more]
A0A6S9KZ63_9STRA	5.590e-45	71.88	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]
A0A7S2WUG0_9STRA	1.220e-44	77.42	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
L8H292_ACACA	4.490e-44	75.27	Ribosomal proteins l2, RNA binding domain containi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 11..90 e-value: 2.1E-31 score: 120.3
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..96
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 11..90 e-value: 4.7E-17 score: 61.7
None	No IPR available	GENE3D	2.40.50.140		coord: 1..86 e-value: 1.3E-41 score: 142.6
None	No IPR available	PANTHER	PTHR13691:SF47		coord: 1..96
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig120017	contig	H-elongata_contig120017:1421..1726 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig120017.1547.1	mRNA_H-elongata_contig120017.1547.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig120017 1421..1726 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig120017.1547.1 ID=prot_H-elongata_contig120017.1547.1|Name=mRNA_H-elongata_contig120017.1547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIH
EPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAMLLLA
ML

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR022666	Rbsml_prot_L2_RNA-bd_dom
IPR012340	NA-bd_OB-fold