mRNA_H-elongata_contig120017.1547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig120017.1547.1
Unique NamemRNA_H-elongata_contig120017.1547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.160e-56
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 288
            MGKVIRGQRKGKGGIF SHTRLRKG VK RKLDYAERHGYIKGV+KD+IHEPGRGAPLAK+QFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK ++
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASL 96
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.360e-48
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 279
            MGKVIRGQRKGKG +F SHT+ RKGAVKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA + F+NPY+FK+D EL+VAVEGMYSG FIYCGKK
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKK 93
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.360e-48
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 279
            MGKVIRG RKG+G +F SHTRLRKG VK RKLDYAERHGYIKGV+K+IIHEP RGAP+AKIQFQNPY++K+DNELIVA EGMY+G FIYCGKK
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKK 93
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A6G1SEE1_9ACAR (60S ribosomal protein L8 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SEE1_9ACAR)

HSP 1 Score: 155 bits (393), Expect = 3.440e-46
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 288
            MG+VIRGQRKG GGIFKSH + RKGA K R +DYAERHGYIKGV+K+IIH+PGRGAPLAK+ F++PYKF+ + EL +A EGMYSGQFIYCG+K  M
Sbjct:    1 MGRVIRGQRKGAGGIFKSHNKHRKGAAKLRPVDYAERHGYIKGVVKEIIHDPGRGAPLAKVDFRDPYKFRHNKELFIAAEGMYSGQFIYCGRKATM 96
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.140e-46
Identity = 69/93 (74.19%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 279
            MGKV+RG RKGKG +FKSHTRLRKG  K R+LD++ER GY+KG++K+I+HEPGRGAPLA+IQFQNPYK+++DNEL+V  EGMYSGQFI+CGKK
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKK 93
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A8B8QVU7_9MYRT (60S ribosomal protein L8-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QVU7_9MYRT)

HSP 1 Score: 155 bits (391), Expect = 4.060e-45
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 288
            MG+VIRGQRKG GGIFKSH + RKGA K R +D+AERHGYIKGVIK+IIH+PGRGAPLA++ F++PYKF+ + EL +A EGMYSGQFIYCG+K AM
Sbjct:    1 MGRVIRGQRKGAGGIFKSHNKHRKGAAKLRPVDFAERHGYIKGVIKEIIHDPGRGAPLARVDFRDPYKFRHNKELFIAAEGMYSGQFIYCGRKAAM 96
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: UPI0014259132 (60S ribosomal protein L8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259132)

HSP 1 Score: 154 bits (390), Expect = 5.440e-45
Identity = 67/96 (69.79%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 288
            MG+VIRGQRKG G +FKSH + RKG  + R +D+AERHGYIKG++KDIIH+PGRGAPLA++QF++PYKFK+ NEL++A EGMY+GQFIYCGKK A+
Sbjct:    1 MGRVIRGQRKGAGSVFKSHNKHRKGPARLRTIDFAERHGYIKGIVKDIIHDPGRGAPLARVQFRDPYKFKKRNELMIAAEGMYTGQFIYCGKKAAL 96
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A6S9KZ63_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9KZ63_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.590e-45
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAM 288
            MGK ++ QRKGKGGIFK+H R RKGAVK R LDYAE+HGYI+GVIK+IIH+PGRGAP+AK+QF N Y++KRD EL++A EGMY+GQFIYCGKK  +
Sbjct:    1 MGKYVQAQRKGKGGIFKAHIRTRKGAVKLRPLDYAEKHGYIRGVIKEIIHDPGRGAPVAKVQFLNAYRYKRDTELMIATEGMYTGQFIYCGKKATL 96
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.220e-44
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 279
            MGKV RGQRKGKG IFKSHTRLR G VK R LDYAER G+ KGVIKD +HEPGRGAP+AK+QF N Y++KRDN L VAVEGMY+GQF+YCGKK
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKK 112
[Close]
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Match: L8H292_ACACA (Ribosomal proteins l2, RNA binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H292_ACACA)

HSP 1 Score: 152 bits (384), Expect = 4.490e-44
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIHEPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKK 279
            MG+VIRGQRKGKG +FKSHT  RKGA + RKLD+AER GYIKGV+KDIIH+PGRGAPLAK+QF+NPYK+  D EL VA EGM++GQF+YCGKK
Sbjct:    1 MGRVIRGQRKGKGSVFKSHTFHRKGAAQHRKLDFAERKGYIKGVVKDIIHDPGRGAPLAKVQFKNPYKYGLDKELFVAAEGMHTGQFVYCGKK 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120017.1547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI1.160e-5690.63Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S2V227_9STRA1.360e-4880.65Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835ZD66_9STRA1.360e-4881.72Translation protein SH3-like domain-containing pro... [more]
A0A6G1SEE1_9ACAR3.440e-4672.9260S ribosomal protein L8 (Fragment) n=1 Tax=Aceria... [more]
A0A7R9UAP5_9STRA7.140e-4674.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8B8QVU7_9MYRT4.060e-4572.9260S ribosomal protein L8-like n=1 Tax=Rhodamnia ar... [more]
UPI00142591325.440e-4569.7960S ribosomal protein L8 n=1 Tax=Anneissia japonic... [more]
A0A6S9KZ63_9STRA5.590e-4571.88Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2WUG0_9STRA1.220e-4477.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
L8H292_ACACA4.490e-4475.27Ribosomal proteins l2, RNA binding domain containi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig120017contigH-elongata_contig120017:1421..1726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.5e-44
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.793323-CDS-H-elongata_contig120017:1420..17261622929703.793323-CDS-H-elongata_contig120017:1420..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120017 1421..1726 +
1691679125.2452826-CDS-H-elongata_contig120017:1420..17261691679125.2452826-CDS-H-elongata_contig120017:1420..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig120017 1421..1726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig120017.1547.1prot_H-elongata_contig120017.1547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig120017 1421..1726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig120017.1547.1

>prot_H-elongata_contig120017.1547.1 ID=prot_H-elongata_contig120017.1547.1|Name=mRNA_H-elongata_contig120017.1547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGKVIRGQRKGKGGIFKSHTRLRKGAVKFRKLDYAERHGYIKGVIKDIIH
EPGRGAPLAKIQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKGAMLLLA
ML
back to top

mRNA from alignment at H-elongata_contig120017:1421..1726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig120017.1547.1 ID=mRNA_H-elongata_contig120017.1547.1|Name=mRNA_H-elongata_contig120017.1547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig120017:1421..1726+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAAGGTTATTCGTGGACAGAGGAAGGGTAAGGGAGGTATCTTCAA
ATCTCACACACGTCTCCGTAAGGGCGCGGTGAAGTTCCGTAAGCTTGACT
ACGCCGAGCGCCATGGCTACATCAAAGGTGTGATCAAGGACATCATCCAC
GAGCCTGGGAGAGGTGCGCCTCTTGCGAAGATCCAGTTCCAGAACCCCTA
CAAGTTCAAGCGCGACAACGAGCTTATCGTGGCGGTGGAGGGCATGTACT
CTGGACAGTTCATCTACTGCGGGAAGAAGGGTGCGATGCTGCTACTGGCG
ATGCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig120017:1421..1726+

>mRNA_H-elongata_contig120017.1547.1 ID=mRNA_H-elongata_contig120017.1547.1|Name=mRNA_H-elongata_contig120017.1547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig120017:1421..1726+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAAGGTTATTCGTGGACAGAGGAAGGGTAAGGGAGGTATCTTCAA
ATCTCACACACGTCTCCGTAAGGGCGCGGTGAAGTTCCGTAAGCTTGACT
ACGCCGAGCGCCATGGCTACATCAAAGGTGTGATCAAGGACATCATCCAC
GAGCCTGGGAGAGGTGCGCCTCTTGCGAAGATCCAGTTCCAGAACCCCTA
CAAGTTCAAGCGCGACAACGAGCTTATCGTGGCGGTGGAGGGCATGTACT
CTGGACAGTTCATCTACTGCGGGAAGAAGGGTGCGATGCTGCTACTGGCG
ATGCTGATGGGTAAGGTTATTCGTGGACAGAGGAAGGGTAAGGGAGGTAT
CTTCAAATCTCACACACGTCTCCGTAAGGGCGCGGTGAAGTTCCGTAAGC
TTGACTACGCCGAGCGCCATGGCTACATCAAAGGTGTGATCAAGGACATC
ATCCACGAGCCTGGGAGAGGTGCGCCTCTTGCGAAGATCCAGTTCCAGAA
CCCCTACAAGTTCAAGCGCGACAACGAGCTTATCGTGGCGGTGGAGGGCA
TGTACTCTGGACAGTTCATCTACTGCGGGAAGAAGGGTGCGATGCTGCTA
CTGGCGATGCTG
back to top