mRNA_H-elongata_contig7804.15475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7804.15475.1
Unique NamemRNA_H-elongata_contig7804.15475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A2J7ZRN6_9CHLO (Transmembrane protein 97 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZRN6_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.330e-21
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFGPGA 348
            LQ+H++TN D+ ++   + WF +L+  ETL  +PFF     GF+RR N +R+PCIIYGT  AT+++PI+ADIL   +  S  +R  L  IY P+L++PL LVL MA    PF   A
Sbjct:   44 LQWHIKTNEDHLVSTNPV-WFVSLVTCETLLQLPFFFVVAYGFIRRANWIRVPCIIYGTHVATTMVPILADILFGPD--SGPKRLTLFWIYFPYLLVPLLLVLRMALVDKPFAAAA 156          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A2K3E7Z2_CHLRE (EXPERA domain-containing protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E7Z2_CHLRE)

HSP 1 Score: 97.8 bits (242), Expect = 1.680e-20
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            LQ+H++TN D+ ++   + WF +L+W ET   +PFF  A   F++R N +R+PCIIYG   AT+++PI+ DIL S    +      L +IY P+L LPLALV+ MA    PFG
Sbjct:   44 LQWHIKTNGDHLVSTNPL-WFVSLVWCETALQLPFFFVAAYAFIKRANWIRVPCIIYGAHVATTMVPILTDILFSPA--AGSHSPALAAIYAPYLALPLALVIRMAVSAQPFG 153          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A813FG80_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FG80_POLGL)

HSP 1 Score: 96.3 bits (238), Expect = 6.750e-20
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRW---NAVRIPCIIYGTEAATSVIPIIADI-LASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPF 336
            LQ HVE N D+ MA P   W  +L+  E L  +PFF FA A F R     NA+R+PCIIYGT   T+ IPI+A I L +E+  S+  R+KL  +Y+P+L +PL L  +M A P PF
Sbjct:   51 LQIHVEANGDFLMASPP-SWLRSLLAAELLLQLPFFPFAAAAFWRASPADNAMRLPCIIYGTHVVTTQIPILAAIVLDTEHVKSESHRWKLFGMYVPYLAVPLLLTAVMLARPAPF 165          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A836BPG6_9CHLO (EXPERA domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BPG6_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 8.630e-20
Identity = 46/112 (41.07%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPF 336
            LQ+H++TN D+ ++   + WF +++W ET+  +PFF  A   F+++ N +RIPCIIYG+  AT+++PI+ DIL      S   ++ L +IY+P+LI+P+ LV+ MAA   P+
Sbjct:   45 LQWHIKTNGDHLVSSNPV-WFVSMVWCETVLQMPFFFVAAWAFIKKANWIRIPCIIYGSHVATTMVPILGDILFGPE--SGPNKHVLAAIYVPYLIVPVLLVIRMAAAEKPW 153          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A150GYU0_GONPE (EXPERA domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GYU0_GONPE)

HSP 1 Score: 94.4 bits (233), Expect = 3.050e-19
Identity = 50/114 (43.86%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAK-PTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            L++H+E N D+ ++K PT  WF +L+W E L+ +PFF  A   F++R N +R+P IIYG    T++IPI+ DIL   +  S  +R+ L +IY+P+LI+PL L++ MA    PFG
Sbjct:   45 LKWHIEMNGDHLVSKNPT--WFVSLVWGEVLYQLPFFFVASYAFIKRRNWIRVPSIIYGAHVVTTMIPILTDILFGPD--SGPKRHTLAAIYVPYLIVPLLLLVRMAVVEQPFG 154          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A8J4CRT1_9CHLO (EXPERA domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CRT1_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 7.600e-19
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            +Q+H++TN D+ +    + WF +L+  E    +PFF FA   F++R N +R+P I+YGT  ATS++PI+ DIL S +  S  +R  L  IYLP+LI+PL LV+ M     PFG
Sbjct:   45 IQWHIKTNGDHLVGTNPL-WFVSLVACECFIQLPFFFFATYAFIKRRNWIRMPSILYGTHVATSMVPILVDILLSPS--SGPKRVTLALIYLPYLIVPLLLVVRMVVTAQPFG 154          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: D8UHN3_VOLCA (EXPERA domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHN3_VOLCA)

HSP 1 Score: 93.2 bits (230), Expect = 7.990e-19
Identity = 48/113 (42.48%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            LQ+H++TN D+ ++   + WF +L+  E L  +PFF  A   F++R N +RIPCI+YG+  AT+++PI+++ L S    +  +R  LVSIYLP+L++P+ LV+ MA    PFG
Sbjct:   45 LQWHIKTNGDHLVSSNPL-WFVSLVACEILLQLPFFFVASYAFLKRRNWIRIPCIVYGSHVATTMVPILSEFLFSPE--AGPKRLTLVSIYLPYLVVPVLLVVRMAVVERPFG 154          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: C1EB28_MICCC (EXPERA domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EB28_MICCC)

HSP 1 Score: 91.3 bits (225), Expect = 3.870e-18
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSD-VQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            L FHV TN D  MA P   WF++ I  E LF +PFF      F  R N +RIP ++YG   AT++IPI+A+IL       D   R+KL  IYLP+L++P ++   +  D  PFG
Sbjct:   44 LDFHVRTNSDPLMADPPT-WFKSFILFELLFQLPFFFIGFKAFYERRNWIRIPGVVYGAHTATTLIPILAEILHPATVFPDEAARWKLFLIYLPYLLVPASMAYALGVDDKPFG 156          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A4D9D300_9STRA (EXPERA domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D300_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.710e-18
Identity = 48/117 (41.03%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFGPGAP 351
            L+++ ET  D+ MA P  PWF+A++  E +  +PFF  A  GF  + N +R+PCI+YG+  AT+++PI+ D  A   +LS  ++  L+ IY P+L++P+ LV+IM  +  PFG G P
Sbjct:   48 LRWYTETYGDFLMANPP-PWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPIL-DAFARAPHLSLDKKMTLIGIYSPYLLVPVMLVVIMWRNERPFGMGLP 162          
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Match: A0A836BQS8_9CHLO (EXPERA domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQS8_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 5.600e-18
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 LQFHVETNHDYFMAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAATSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPFG 339
            LQ+H++TN D+ +A   + WF++LI  E  F +PFF  A   F+ + N +RIPCIIYG+  AT+V+PI+ D L      +   +Y L SI  P+L++PL LV+ MA    P+G
Sbjct:   45 LQWHIKTNGDHLVATNPV-WFKSLICCELTFQLPFFFIATYAFITKANWIRIPCIIYGSHVATTVVPILGDFLFGPE--AGPNKYVLASINAPFLVIPLLLVIRMAMVEQPWG 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7804.15475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J7ZRN6_9CHLO3.330e-2145.69Transmembrane protein 97 n=1 Tax=Tetrabaena social... [more]
A0A2K3E7Z2_CHLRE1.680e-2044.25EXPERA domain-containing protein n=4 Tax=Chlamydom... [more]
A0A813FG80_POLGL6.750e-2047.41Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A836BPG6_9CHLO8.630e-2041.07EXPERA domain-containing protein n=1 Tax=Edaphochl... [more]
A0A150GYU0_GONPE3.050e-1943.86EXPERA domain-containing protein n=1 Tax=Gonium pe... [more]
A0A8J4CRT1_9CHLO7.600e-1943.36EXPERA domain-containing protein n=1 Tax=Volvox re... [more]
D8UHN3_VOLCA7.990e-1942.48EXPERA domain-containing protein n=1 Tax=Volvox ca... [more]
C1EB28_MICCC3.870e-1842.98EXPERA domain-containing protein n=2 Tax=Micromona... [more]
A0A4D9D300_9STRA4.710e-1841.03EXPERA domain-containing protein n=3 Tax=Monodopsi... [more]
A0A836BQS8_9CHLO5.600e-1842.48EXPERA domain-containing protein n=1 Tax=Edaphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7804contigH-elongata_contig7804:4715..6304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue4.6e-15
Seed eggNOG ortholog3055.EDP09977
EggNOG free text desc.Protein of unknown function (DUF2781)
EggNOG OGs2AJ2Z@1,2RZ62@2759,34M97@3041,37UMG@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size1243
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7804.15475.1prot_H-elongata_contig7804.15475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7804 4751..5439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.4176705-UTR-H-elongata_contig7804:4714..47501622931185.4176705-UTR-H-elongata_contig7804:4714..4750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7804 4715..4750 +
1691679732.9631593-UTR-H-elongata_contig7804:4714..47501691679732.9631593-UTR-H-elongata_contig7804:4714..4750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7804 4715..4750 +
1622931185.4706874-UTR-H-elongata_contig7804:5439..63041622931185.4706874-UTR-H-elongata_contig7804:5439..6304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7804 5440..6304 +
1691679732.9947984-UTR-H-elongata_contig7804:5439..63041691679732.9947984-UTR-H-elongata_contig7804:5439..6304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7804 5440..6304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.4337916-CDS-H-elongata_contig7804:4750..49851622931185.4337916-CDS-H-elongata_contig7804:4750..4985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7804 4751..4985 +
1691679732.9754143-CDS-H-elongata_contig7804:4750..49851691679732.9754143-CDS-H-elongata_contig7804:4750..4985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7804 4751..4985 +
1622931185.4497662-CDS-H-elongata_contig7804:5332..54391622931185.4497662-CDS-H-elongata_contig7804:5332..5439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7804 5333..5439 +
1691679732.9848447-CDS-H-elongata_contig7804:5332..54391691679732.9848447-CDS-H-elongata_contig7804:5332..5439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7804 5333..5439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7804.15475.1

>prot_H-elongata_contig7804.15475.1 ID=prot_H-elongata_contig7804.15475.1|Name=mRNA_H-elongata_contig7804.15475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MAKPTIPWFEALIWIETLFHVPFFAFAVAGFVRRWNAVRIPCIIYGTEAA
TSVIPIIADILASENNLSDVQRYKLVSIYLPWLILPLALVLIMAADPTPF
GPGAPDPMHSKRL*
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mRNA from alignment at H-elongata_contig7804:4715..6304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7804.15475.1 ID=mRNA_H-elongata_contig7804.15475.1|Name=mRNA_H-elongata_contig7804.15475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1590bp|location=Sequence derived from alignment at H-elongata_contig7804:4715..6304+ (Himanthalia elongata Himel1 dioecious)
TTGCAGTTCCATGTGGAAACGAATCACGACTATTTTATGGCGAAGCCCAC CATACCCTGGTTTGAAGCGTTGATCTGGATAGAGACCCTCTTCCACGTGC CGTTCTTCGCTTTCGCGGTTGCTGGATTTGTGAGACGATGGAATGCGGTG CGGATCCCATGCATCATTTATGGGACGGAGGCTGCTACATCCGTCATTCC AATTATAGCGGACATCCTAGCGTCGGAAAATAACCTCTCCGATGTGCAAC GGTACAAACTCGTCAGCATATGTGAGTTGCGCACGTCTTGGGATCACGGT TATGTAAACCCCTACGTGGTAAGCATTAAAAGGCTGCGACTTCTACCTCA AAGCATAACTTGACACGGTTCTTGATTAGCTCTGTTGGTCCGATTGCCTT ACGGAAAAGTCCAACACTATTTGACTGCAAAGAAAGGAACGACCTTTTCG GGCTAGGATCCTGAGAACTCTGAAGGAAACGTCTTGCGCTTTCTTATATC GCTTGGTCCTGGACCGTGTTCTGGCAAACCCATCCATTCACCAAGTACAC GTGACGTTAATGTTGCTGGTGTTTTTTTCTGTTCGCGCTTGCCGAAACCA CGGACGTGCCGCTCGCAGATCTACCATGGTTAATACTTCCCCTGGCGTTG GTACTTATCATGGCGGCGGACCCAACACCCTTCGGACCAGGTGCTCCAGA TCCGATGCATTCCAAGCGACTCTAGTTTAAGAGATGGGTTGATAGCCACA ACCTGGAGTTCACTAATATGTGCTGGTACGGTGGACAATGTGTCCTTGCT CATCCCTTAGCTCATGTCACTATGTGCCGGGCTTGGCCGCTCGGTTAGGT GTTTAAACTGGGTCGGAGCATCTTTGCTCATCGAAAAACGATGTACGACT TTCGCATTCAACGGAGGAAAACAAAATTGCCTACTATATTTACCACTGCT TTATCGATTCTGGTGTGCGAAGGTTGCCCTGCTTACCTTTCCTTTTCGTG CCAAGCGGTCACTGCTTTTTGAGGCCGCTAACTACCTGGATATCGGAGAT TGTCAAGTGACTTCGTTTCATCAAGGCAATATTCATGTTCACAGGTTGGC GAACTGGGATTAACTTAATTCTTAATTCGGGGTTATTAAATTCGCCTGTT CTTTGTTTCGATCGTGAATCCAAGTGGCAGAATCCTTTCGAAATCTGCAT CGATTAGCATTTTCGTAGCTCGAATAGAAGTTTCAGTGTTAAACAGGAGT GGTCAAAAATCTTATTAGTGCTTTCTCGCATGATGTCGCCATTTAACTCA GCGAAAGATACAGTGAGTGTACGATGGCGGGACGAGCTGGAAGTAGGACC AATTAATCAGATAAGATTACAACCTCAGCTCAGCTGTTTGTTCGTCCCGC CATTTTTTTCAAGGCTAGCTGTGAACACGATGAATGCCCACCCAAGCTCC AAAAGGGTTTTGATGAAGGCAAGTTTTTGTATAAGCTGCGCCTTTGAAAC CTTTCTGGTATGCGTCGTTTACCATTAAAGTAGATTGTAACAGAAAGTAG TTGACGCACACAGATGAATAACCACATTACAAACTCATTC
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Coding sequence (CDS) from alignment at H-elongata_contig7804:4715..6304+

>mRNA_H-elongata_contig7804.15475.1 ID=mRNA_H-elongata_contig7804.15475.1|Name=mRNA_H-elongata_contig7804.15475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig7804:4715..6304+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAGCCCACCATACCCTGGTTTGAAGCGTTGATCTGGATAGAGAC
CCTCTTCCACGTGCCGTTCTTCGCTTTCGCGGTTGCTGGATTTGTGAGAC
GATGGAATGCGGTGCGGATCCCATGCATCATTTATGGGACGGAGGCTGCT
ACATCCGTCATTCCAATTATAGCGGACATCCTAGCGTCGGAAAATAACCT
CTCCGATGTGCAACGGTACAAACTCGTCAGCATATATGGCGAAGCCCACC
ATACCCTGGTTTGAAGCGTTGATCTGGATAGAGACCCTCTTCCACGTGCC
GTTCTTCGCTTTCGCGGTTGCTGGATTTGTGAGACGATGGAATGCGGTGC
GGATCCCATGCATCATTTATGGGACGGAGGCTGCTACATCCGTCATTCCA
ATTATAGCGGACATCCTAGCGTCGGAAAATAACCTCTCCGATGTGCAACG
GTACAAACTCGTCAGCATATATCTACCATGGTTAATACTTCCCCTGGCGT
TGGTACTTATCATGGCGGCGGACCCAACACCCTTCGGACCAGGTGCTCCA
GATCCGATGCATTCCAAGCGACTCTAGATCTACCATGGTTAATACTTCCC
CTGGCGTTGGTACTTATCATGGCGGCGGACCCAACACCCTTCGGACCAGG
TGCTCCAGATCCGATGCATTCCAAGCGACTCTAG
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