mRNA_H-elongata_contig78023.15473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78023.15473.1
Unique NamemRNA_H-elongata_contig78023.15473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A6H5L264_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L264_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 3.190e-125
Identity = 203/233 (87.12%), Postives = 211/233 (90.56%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDP-----SGLDEVARSTAGFSGAELANVINEAAMLAAR 684
            RSVSFAD+AGADEAK EL ELVDFL    ARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEA VPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLP+  GRR ILEVH +KVRM        + L+ +AR TAGFSGAELANV+NEAA+LAAR
Sbjct:   31 RSVSFADIAGADEAKVELKELVDFL-TFPARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPDAPGRRAILEVHCRKVRMQGGRQDTIAVLENIARVTAGFSGAELANVVNEAAILAAR 262          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.750e-123
Identity = 203/233 (87.12%), Postives = 212/233 (90.99%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRM-GDPSG----LDEVARSTAGFSGAELANVINEAAMLAAR 684
            RSVSFAD+AGADEAK EL ELVDFL    ARYAD+GARLPRGVLLSGPSGTGKTLLARAMAAEA VPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLP+  GRR ILEVH +KVRM G+       L+ +AR TAGFSGAELANV+NEAA+LAAR
Sbjct:  187 RSVSFADIAGADEAKVELKELVDFL-TFPARYADIGARLPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPDAPGRRAILEVHCRKVRMQGERQDTIAVLENIARVTAGFSGAELANVVNEAAILAAR 418          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A835Z9E9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9E9_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.080e-96
Identity = 161/226 (71.24%), Postives = 180/226 (79.65%), Query Frame = 1
Query:   49 ELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRS--------------VLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTAGFSGAELANVINEAAMLAAR 684
            ELAE+VDFL + A RY  +GARLPRG+LLSGPSGTGKTLLARA+AAE+ VPF SCSASDFVEMLVGRGA+RVRDLF+RG A+ P IIF+DELDALAK RGG+NSNDEREQTLNQLLTE+DGFDS   +                 +AATNRPEVLDPALTRPGRFDRHV VGLP+E GR  IL VH +KVR G    L  VAR TAGFSGAELAN++NEAA+LA R
Sbjct:   15 ELAEVVDFLRD-ARRYEAMGARLPRGILLSGPSGTGKTLLARAVAAESRVPFISCSASDFVEMLVGRGASRVRDLFKRGAAAAPCIIFVDELDALAKARGGLNSNDEREQTLNQLLTELDGFDSSVAASAXXXXXXXXXXXXXXXIAATNRPEVLDPALTRPGRFDRHVHVGLPDERGRVSILTVHMRKVRAGPDVDLRTVARETAGFSGAELANIVNEAALLAVR 239          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A4D9CR60_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR60_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.060e-93
Identity = 154/228 (67.54%), Postives = 182/228 (79.82%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTAGFSGAELANVINEAAMLAAR 684
            R ++F DVAG D AK EL E+V+FL +  ARY  +GARLP+G+LLSG  GTGKTLLARA+A EAGV F SCSAS+F E+LVGRGAAR+RDLFQRG +S P IIFIDELDALAK RG  +SNDEREQTLNQLL EMDGF+ E   VLV+AATNRPEVLDPAL RPGRFDRH+ VGLP+  GRR IL+VHS+ V +     +  +A  + G+SGAEL+NV+NEAA+LA R
Sbjct:  106 RVITFKDVAGIDAAKLELVEVVNFLRD-RARYDAIGARLPKGILLSGAPGTGKTLLARAVANEAGVSFISCSASEFCELLVGRGAARMRDLFQRGFSSSPCIIFIDELDALAKTRGSFSSNDEREQTLNQLLCEMDGFEGEENCVLVIAATNRPEVLDPALIRPGRFDRHIAVGLPDTRGRRAILDVHSRHVCLAPGVDMQRIATRSKGYSGAELSNVVNEAALLAVR 332          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A024FZ62_9STRA (AAA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ62_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.520e-91
Identity = 155/232 (66.81%), Postives = 182/232 (78.45%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGF-DSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTAGF---SGAELANVINEAAMLAAR 684
            +SVSF D+ G D A+ EL E+VDFL     RY  +GAR+P+G+LL GPSGTGKTLLARA+AAEA V F  CSASDFVEMLVGRGAARVRDLF +       IIFIDE+DALAK RGGINSNDEREQTLNQLLTEMDGF  SE  SV+V+AATNRP+VLDPAL RPGRFDRHV VGLP+  GR  IL++H+++V++GD   L+ VA +       SGAELAN++NEAA+LA R
Sbjct:   63 QSVSFQDIGGIDSARKELEEIVDFL-HNPDRYRAIGARVPKGILLCGPSGTGKTLLARALAAEANVAFLFCSASDFVEMLVGRGAARVRDLFTQAATYDRCIIFIDEIDALAKARGGINSNDEREQTLNQLLTEMDGFAGSESNSVIVIAATNRPQVLDPALCRPGRFDRHVYVGLPDHKGRLDILKLHTRRVKLGDDVDLNRVAENCGIMGQQSGAELANLVNEAALLAVR 293          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A1V9YPE2_9STRA (Cell division protease ftsH n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE2_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.290e-91
Identity = 154/230 (66.96%), Postives = 183/230 (79.57%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTA--GFSGAELANVINEAAMLAAR 684
            + +SFADVAG D+AK EL E+VDFL +   RY  +GA++P+GVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDELDALAK RGG+NSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+ AGR  IL VH+K++R+G    L  +A+S    G+SGA+LA ++NEAA++A R
Sbjct:  171 KRISFADVAGIDKAKKELEEVVDFL-KHPERYEKIGAKIPKGVLLCGPSGTGKTLLARAVAAEAGVAFLYCSASDFVEMLVGRGASRVRDLFTQASQHPKCIIFIDELDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVIVIAATNRPHVLDPALCRPGRFDRHVYVGLPDAAGREAILSVHAKRIRLGTSVVLGALAKSPKLDGYSGAQLACLVNEAALMAVR 399          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A1W0A7G4_9STRA (Cell division protease ftsH n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7G4_9STRA)

HSP 1 Score: 280 bits (717), Expect = 5.540e-90
Identity = 151/230 (65.65%), Postives = 182/230 (79.13%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTA--GFSGAELANVINEAAMLAAR 684
            + +SFADVAG D+AK EL E+VDFL +   RY  +GA++P+GVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDELDALAK RGGINSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+  GR  IL+VH+ ++R+     + E+A++    G+SGA+LA ++NEAA++A R
Sbjct:  171 KRISFADVAGIDKAKKELEEVVDFL-KNPQRYEKIGAKIPKGVLLCGPSGTGKTLLARAVAAEAGVAFLYCSASDFVEMLVGRGASRVRDLFTQASQHPKCIIFIDELDALAKARGGINSNDEREQTLNQLLTEMDGFEGHTEGVIVIAATNRPHVLDPALCRPGRFDRHVYVGLPDANGREAILKVHANRIRLRPSLSIAEIAKNPKLNGYSGAQLACLVNEAALMAVR 399          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A6G0WHW9_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHW9_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.360e-89
Identity = 151/228 (66.23%), Postives = 178/228 (78.07%), Query Frame = 1
Query:    7 VSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVA--RSTAGFSGAELANVINEAAMLAAR 684
            +SFAD+AG D AK EL E+VDFL +   RY  +GA++P+GVLL GPSGTGKT+LARA+AAEAGVPF  CSASDFVEMLVGRGA+RVRDLF +       IIFIDE+DALAK RGG+NSNDEREQTLNQLLTEMDGF+     VLV+AATNRP VLDPAL RPGRFDRHV VGLP+  GR  IL VH K++R+     + E+A  R   G SGA+LA ++NEAA++A R
Sbjct:  171 ISFADIAGIDAAKQELEEIVDFL-KRPQRYEAIGAKIPKGVLLCGPSGTGKTMLARAVAAEAGVPFLFCSASDFVEMLVGRGASRVRDLFTQASQHAKCIIFIDEIDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVLVIAATNRPHVLDPALLRPGRFDRHVFVGLPDATGREAILRVHVKRIRLHSRVSIKELAVNRQLEGASGAQLACLVNEAALMAVR 397          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: A0A7S2RJG8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJG8_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.810e-89
Identity = 152/231 (65.80%), Postives = 185/231 (80.09%), Query Frame = 1
Query:    1 RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRG-GINSNDEREQTLNQLLTEMDGFDSEGRS--VLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTAGFSGAELANVINEAAMLAAR 684
            + V+F DVAG D AKAEL E+VDFL + + R+  +GAR+P+G+LL+GP+GTGKT+LARAMA E G PF   SAS+FVE LVGRGAARVRDLF+R     P+IIFIDE+D+L + RG  +NSN+EREQTLNQ+LTEMDGFDS G S  +LV+AATNRP+VLDPAL RPGRFDRHV VGLP+  GR  IL  H++++RM     L  VARSTAGFSGA+LANV+NEAA+LA R
Sbjct:  193 QGVTFNDVAGVDAAKAELLEVVDFLRD-SERFRKMGARMPKGLLLAGPAGTGKTMLARAMANEVGAPFLVVSASEFVETLVGRGAARVRDLFKRARDQAPAIIFIDEVDSLGRARGLSLNSNEEREQTLNQILTEMDGFDSSGSSAPILVIAATNRPQVLDPALLRPGRFDRHVYVGLPDVTGREAILASHARRIRMDSTVDLSAVARSTAGFSGADLANVVNEAALLAVR 422          
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Match: T0QP29_SAPDV (AAA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QP29_SAPDV)

HSP 1 Score: 279 bits (713), Expect = 2.040e-89
Identity = 153/228 (67.11%), Postives = 179/228 (78.51%), Query Frame = 1
Query:    7 VSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSGTGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQPSIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAATNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGLDEVARSTA--GFSGAELANVINEAAMLAAR 684
            +SFADVAG D+AK EL E+VDFL +   RY  +GA++P+GVLL GPSGTGKTLLARA+AAEAGV F  CSASDFVEMLVGRGA+RVRDLF +       IIFIDELDALAK RGG+NSNDEREQTLNQLLTEMDGF+     V+V+AATNRP VLDPAL RPGRFDRHV VGLP+ AGR  IL VH K++R G    +  +A++    G SGA+LA ++NEAA+LA R
Sbjct:  173 ISFADVAGIDKAKKELEEVVDFL-KRPQRYETIGAKIPKGVLLCGPSGTGKTLLARAVAAEAGVAFLYCSASDFVEMLVGRGASRVRDLFTQASQHPKCIIFIDELDALAKARGGLNSNDEREQTLNQLLTEMDGFEGHTEGVIVIAATNRPHVLDPALCRPGRFDRHVYVGLPDAAGREAILRVHMKRIRTGLTVSVTTIAKNPKLDGSSGAQLACLVNEAALLAVR 399          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78023.15473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L264_9PHAE3.190e-12587.12AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSS7_ECTSI1.750e-12387.12AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9E9_9STRA1.080e-9671.24P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9CR60_9STRA1.060e-9367.54AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A024FZ62_9STRA1.520e-9166.81AAA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A1V9YPE2_9STRA2.290e-9166.96Cell division protease ftsH n=1 Tax=Achlya hypogyn... [more]
A0A1W0A7G4_9STRA5.540e-9065.65Cell division protease ftsH n=1 Tax=Thraustotheca ... [more]
A0A6G0WHW9_9STRA1.360e-8966.23AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2RJG8_9STRA1.810e-8965.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0QP29_SAPDV2.040e-8967.11AAA domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78023contigH-elongata_contig78023:452..2777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.7e-99
Seed eggNOG ortholog2880.D8LSS7
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031967,GO:0031975,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, AAA-type, core
Ec32 orthologEc-15_002770.1
Exons4
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78023.15473.1prot_H-elongata_contig78023.15473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78023 452..2777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.161081-CDS-H-elongata_contig78023:451..7041622931185.161081-CDS-H-elongata_contig78023:451..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 452..704 +
1691679732.8812826-CDS-H-elongata_contig78023:451..7041691679732.8812826-CDS-H-elongata_contig78023:451..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 452..704 +
1622931185.1859503-CDS-H-elongata_contig78023:1376..15461622931185.1859503-CDS-H-elongata_contig78023:1376..1546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 1377..1546 +
1691679732.8941076-CDS-H-elongata_contig78023:1376..15461691679732.8941076-CDS-H-elongata_contig78023:1376..1546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 1377..1546 +
1622931185.2033982-CDS-H-elongata_contig78023:2347..24821622931185.2033982-CDS-H-elongata_contig78023:2347..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 2348..2482 +
1691679732.904236-CDS-H-elongata_contig78023:2347..24821691679732.904236-CDS-H-elongata_contig78023:2347..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 2348..2482 +
1622931185.223599-CDS-H-elongata_contig78023:2651..27771622931185.223599-CDS-H-elongata_contig78023:2651..2777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 2652..2777 +
1691679732.91518-CDS-H-elongata_contig78023:2651..27771691679732.91518-CDS-H-elongata_contig78023:2651..2777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78023 2652..2777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78023.15473.1

>prot_H-elongata_contig78023.15473.1 ID=prot_H-elongata_contig78023.15473.1|Name=mRNA_H-elongata_contig78023.15473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
RSVSFADVAGADEAKAELAELVDFLGEGAARYADVGARLPRGVLLSGPSG
TGKTLLARAMAAEAGVPFFSCSASDFVEMLVGRGAARVRDLFQRGVASQP
SIIFIDELDALAKVRGGINSNDEREQTLNQLLTEMDGFDSEGRSVLVVAA
TNRPEVLDPALTRPGRFDRHVTVGLPNEAGRRGILEVHSKKVRMGDPSGL
DEVARSTAGFSGAELANVINEAAMLAAR
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mRNA from alignment at H-elongata_contig78023:452..2777+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78023.15473.1 ID=mRNA_H-elongata_contig78023.15473.1|Name=mRNA_H-elongata_contig78023.15473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2326bp|location=Sequence derived from alignment at H-elongata_contig78023:452..2777+ (Himanthalia elongata Himel1 dioecious)
AGGTCTGTGTCATTCGCCGACGTTGCTGGAGCCGACGAGGCCAAGGCCGA GCTCGCCGAGCTCGTTGACTTCCTCGGAGAAGGCGCCGCGAGGTACGCCG ACGTCGGCGCGCGGCTCCCGAGAGGCGTTTTACTGTCGGGACCGTCGGGG ACGGGAAAGACGCTGCTGGCCCGAGCCATGGCGGCGGAGGCGGGTGTTCC TTTTTTTTCGTGCTCGGCTAGCGATTTCGTGGAGATGCTGGTAGGCCGTG GAGGTGAGAGAGGTACAGAGGGGAGCGGGGACCACGCACTCTTCATGCGT GATCTGATACGTCGCCGAGAGGGGGCTAGGGAGCGGCGCCAAAAAGCTGT GGGCGACAGGAGACTGAGTAAATGACTCATTGTGTGTGTGTTTGTGTGTG TATGTCAGTCTATATTTTGATCACGTGTCTCCATGTGGCCCAGATGGTGT GTTCTAGTCAAACGAGGCAGCCCTTGGGCTACAGCCAGGGCTGCTACTGC TACTGCTGCTTCTGTGATTGTTTTTTGTTTCTGCATCTCTGTAGAAAAAA GAAGAAAAAACCCCTCTGGCAACAGCTTGTGACTATACAGGGGATCCTTT ATGCTTGTGTTTTATCAATGTGTTTTGGGCCCGGGGTTGGAGTTAGGGTT GGCGTTTCTGTTTGGCTAGACTACGGTAATCATGCCATTCTCGAGGGGGG TATGTCGCTCGTAGTCAATTTCGTGAGGGGTTCATGGTCCTGATACCGTA TCCCTCTTCTCCCTTCCGCTCCCCTTATTTAATGCTTCTGGCGGATGCCT CGTTTCTCGTGCGGCATTTCGATTTTTTCCTGTTTGGTCTCGGGGATTTA TTTTGCTGCTTTTTCATTTTTTCTTAAAAAATATATAAACTCATCCCAAC CCTTCCAACATTTACACCTTCTTAGCCGCGAGAGTGCGCGACTTGTTCCA GAGGGGCGTGGCGTCACAGCCGTCGATCATCTTCATCGACGAGCTCGACG CCTTGGCGAAGGTGCGAGGGGGGATAAACTCCAACGACGAGCGAGAGCAG ACCCTTAATCAGCTCCTCACGGAAATGGACGGCTTCGACAGCGAGGTGAT GGCCGCAGAGAAACGCTTCCGTTTGTAGGATGTTGACGCTCTAGAAATTC CGCCCAAAATTCGACGAAAATATGAAGCTCTAGTCTCTACAGCAGTAAGA ACGCTTGCTGAAATTCGCGTGATTTAGCGTGGGTCGACGTCTGTACGACG CAGCTTTGTGTTCCAAGGATACTTCCCGAGTTAACTGGCTTCAGCATTTC GCTTCTGGCGAACGTGGCAATAGTCCAATGGCGGCGATGGCCGGTCGACG CCATGTTTTCGTAAAGTCATTCATATGGTCAAGACCGCGCTGGCCGCGCT CATAGATTAGTATCGCTTGCCATTGGCGTCCTCTTCAGCGTCTTCCGTTT GGGCTTGTCGAGTAACTGGGGGGCGTGCCAAGCCCAGACGGCGCATTTTT GCGGGACATACAAGAAATATAATACATGTTTCTCTCACTGCATATCTCCA CGAGAGCGCGTATTGTAAAAAAAAACGTCATTTTTGTCGGTTTGTCACCC AGGACGGTACTCAGTGAATCAAACATATCCTCGATTCCCTCCACGATGGC CAGCTTTTTCGTCAGCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCTCC CACCCCACCCCCACATCTACCACACCCCAATCACCACATACATAATGACT GCANNNNNNNNNNTTCGTCAGCCCCCCTCCCACATCCCCCCATAACGTCT TATCCCACCCCCCACCCCAGTTGATGTACGGAACTTATCGCTAATCGATG GCTCCCGGTGTTCCTACCTCGTCCTGCGATACGTTTCTTCTCGAAGGGAC GGAGCGTTTTGGTCGTAGCGGCGACTAACCGTCCGGAGGTGCTCGACCCG GCGCTGACTCGTCCGGGGCGATTCGACCGGCATGTCACGGTGGGGTTACC CAATGAGGCCGGGAGACGGGGTATTCTGGAGGTATTAAGAAAAATAGACT CGTTTCTTGATGCTATTGTGTGTGTGTGGATACCTCGAGTGTTTTGTGTA TGTATCCGACGTCCGCATGCTCCCGTGTGAGGGTTTCTTGAACCGCAAAA GGCGTCGAATGAATGTTTTGATCATCCCAGCCCGACCCCGCCGTGGTCAG GTGCACAGCAAAAAAGTGCGCATGGGGGACCCCTCGGGGCTGGACGAAGT CGCACGATCCACAGCGGGATTTTCTGGCGCCGAGCTGGCAAACGTGATCA ACGAGGCTGCCATGCTTGCCGCGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig78023:452..2777+

>mRNA_H-elongata_contig78023.15473.1 ID=mRNA_H-elongata_contig78023.15473.1|Name=mRNA_H-elongata_contig78023.15473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig78023:452..2777+ (Himanthalia elongata Himel1 dioecious)
AGGTCTGTGTCATTCGCCGACGTTGCTGGAGCCGACGAGGCCAAGGCCGA
GCTCGCCGAGCTCGTTGACTTCCTCGGAGAAGGCGCCGCGAGGTACGCCG
ACGTCGGCGCGCGGCTCCCGAGAGGCGTTTTACTGTCGGGACCGTCGGGG
ACGGGAAAGACGCTGCTGGCCCGAGCCATGGCGGCGGAGGCGGGTGTTCC
TTTTTTTTCGTGCTCGGCTAGCGATTTCGTGGAGATGCTGGTAGGCCGTG
GAGAGGTCTGTGTCATTCGCCGACGTTGCTGGAGCCGACGAGGCCAAGGC
CGAGCTCGCCGAGCTCGTTGACTTCCTCGGAGAAGGCGCCGCGAGGTACG
CCGACGTCGGCGCGCGGCTCCCGAGAGGCGTTTTACTGTCGGGACCGTCG
GGGACGGGAAAGACGCTGCTGGCCCGAGCCATGGCGGCGGAGGCGGGTGT
TCCTTTTTTTTCGTGCTCGGCTAGCGATTTCGTGGAGATGCTGGTAGGCC
GTGGAGCCGCGAGAGTGCGCGACTTGTTCCAGAGGGGCGTGGCGTCACAG
CCGTCGATCATCTTCATCGACGAGCTCGACGCCTTGGCGAAGGTGCGAGG
GGGGATAAACTCCAACGACGAGCGAGAGCAGACCCTTAATCAGCTCCTCA
CGGAAATGGACGGCTTCGACAGCGAGCCGCGAGAGTGCGCGACTTGTTCC
AGAGGGGCGTGGCGTCACAGCCGTCGATCATCTTCATCGACGAGCTCGAC
GCCTTGGCGAAGGTGCGAGGGGGGATAAACTCCAACGACGAGCGAGAGCA
GACCCTTAATCAGCTCCTCACGGAAATGGACGGCTTCGACAGCGAGGGAC
GGAGCGTTTTGGTCGTAGCGGCGACTAACCGTCCGGAGGTGCTCGACCCG
GCGCTGACTCGTCCGGGGCGATTCGACCGGCATGTCACGGTGGGGTTACC
CAATGAGGCCGGGAGACGGGGTATTCTGGAGGGACGGAGCGTTTTGGTCG
TAGCGGCGACTAACCGTCCGGAGGTGCTCGACCCGGCGCTGACTCGTCCG
GGGCGATTCGACCGGCATGTCACGGTGGGGTTACCCAATGAGGCCGGGAG
ACGGGGTATTCTGGAGGTGCACAGCAAAAAAGTGCGCATGGGGGACCCCT
CGGGGCTGGACGAAGTCGCACGATCCACAGCGGGATTTTCTGGCGCCGAG
CTGGCAAACGTGATCAACGAGGCTGCCATGCTTGCCGCGAGGGTGCACAG
CAAAAAAGTGCGCATGGGGGACCCCTCGGGGCTGGACGAAGTCGCACGAT
CCACAGCGGGATTTTCTGGCGCCGAGCTGGCAAACGTGATCAACGAGGCT
GCCATGCTTGCCGCGAGG
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