prot_H-elongata_contig11999.1543.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11999.1543.1
Unique Nameprot_H-elongata_contig11999.1543.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length416
Homology
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BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.750e-37
Identity = 125/232 (53.88%), Postives = 144/232 (62.07%), Query Frame = 0 
Query:  139 LKLRLGTGTPALRWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAALEELDLSFNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGKAGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLSSRKELSELVRLRFADAVMAP 370
            L+  LG GTP L W+LLE LS+  CGLRELDPSLRLLPRVRRLS+A+N +  +++FQDC +LE LDLS NR                     XXXXXXXXXXXXXXXXXXXXXXXX     E +RLSTLP L RV   GNP+EAEE K YRV+VLSLLYQG  GEL+ A     A     +  G  GDG GR            + LDG+L SRKEL +L +L F  A   P
Sbjct:  541 LQSGLGMGTPMLHWSLLESLSICKCGLRELDPSLRLLPRVRRLSMAHNRLSRVDFFQDCGSLEVLDLSHNRLTSVENIHAVLGNLRSLKLRGXXXXXXXXXXXXXXXXXXXXXXXXIEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGWGGELKGA-----AGRVSTMFAGGSGDGSGRETG---------IALDGRLPSRKELVQLSQLCFPRAAEVP 758
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BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.390e-35
Identity = 136/240 (56.67%), Postives = 155/240 (64.58%), Query Frame = 0 
Query:  131 SDGEDLAGLKLRLGTGTPALRWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAALEELDLSFNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGKAGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLSSRKELSELVRLRFADAVMAP 370
            S+   +  L+  LG GTP L W+LLE LSV  CGLRELD SLRLLPRVRRLSLA N    +++FQDC +LE LDLS NR           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E +RLSTLP L RV   GNP+EAEE K YRV+VLSLLYQG+ GEL+      +A     +  G  GDG  R            + LDG+L SRKEL +L +L F  A   P
Sbjct:  441 SERPGMGRLQSGLGMGTPMLHWSLLESLSVCKCGLRELDSSLRLLPRVRRLSLANNRFSRVDFFQDCGSLEVLDLSHNRLNSVENIHAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGRGGELK-----GVAGRFSTMLAGGSGDGSRRETG---------IALDGRLPSRKELVQLSQLCFPRAAEVP 666
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI3.750e-3753.88Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE1.390e-3556.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 175..196
e-value: 280.0
score: 3.8
coord: 220..241
e-value: 280.0
score: 3.8
coord: 242..263
e-value: 78.0
score: 8.3
coord: 197..218
e-value: 2.7
score: 17.0
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 148..303
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 153..284
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 244..256
e-value: 1.7
score: 8.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 155..210
e-value: 8.2E-8
score: 31.9
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 199..220
score: 7.689
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 154..175
score: 4.732
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 222..243
score: 7.119
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 177..198
score: 6.149
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 244..265
score: 8.536
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 154..306
e-value: 7.6E-30
score: 105.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11999contigH-elongata_contig11999:3433..6997 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11999.1543.1mRNA_H-elongata_contig11999.1543.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11999 3431..6997 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11999.1543.1 ID=prot_H-elongata_contig11999.1543.1|Name=mRNA_H-elongata_contig11999.1543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=416bp
ALLAPHAAPDDGWGVVAAAASLPSATQLTTARIPAFLMSAPSDRRSFDAV
VSSRASTRDGGRDGETVRGVVDGTVKSGIGGTVSDAELLVSDRREPVFSR
QGMARKRERQDVGDGGDRYLWRATASMEACSDGEDLAGLKLRLGTGTPAL
RWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAAL
EELDLSFNRIRSVENAHRVLGNLRSLNLQGNRLTRTLGLERVFSLEELDL
SRNGIRGLEEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGK
AGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLS
SRKELSELVRLRFADAVMAPPSKHLKHPRAPEREGRGLQQQQQQQQQQSG
GQRHGIPARAPPSLSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf