mRNA_H-elongata_contig11999.1543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11999.1543.1
Unique NamemRNA_H-elongata_contig11999.1543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.750e-37
Identity = 125/232 (53.88%), Postives = 144/232 (62.07%), Query Frame = 1 
Query:  415 LKLRLGTGTPALRWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAALEELDLSFNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGKAGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLSSRKELSELVRLRFADAVMAP 1110
            L+  LG GTP L W+LLE LS+  CGLRELDPSLRLLPRVRRLS+A+N +  +++FQDC +LE LDLS NR                     XXXXXXXXXXXXXXXXXXXXXXXX     E +RLSTLP L RV   GNP+EAEE K YRV+VLSLLYQG  GEL+ A     A     +  G  GDG GR            + LDG+L SRKEL +L +L F  A   P
Sbjct:  541 LQSGLGMGTPMLHWSLLESLSICKCGLRELDPSLRLLPRVRRLSMAHNRLSRVDFFQDCGSLEVLDLSHNRLTSVENIHAVLGNLRSLKLRGXXXXXXXXXXXXXXXXXXXXXXXXIEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGWGGELKGA-----AGRVSTMFAGGSGDGSGRETG---------IALDGRLPSRKELVQLSQLCFPRAAEVP 758
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BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.390e-35
Identity = 136/240 (56.67%), Postives = 155/240 (64.58%), Query Frame = 1 
Query:  391 SDGEDLAGLKLRLGTGTPALRWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAALEELDLSFNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGKAGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLSSRKELSELVRLRFADAVMAP 1110
            S+   +  L+  LG GTP L W+LLE LSV  CGLRELD SLRLLPRVRRLSLA N    +++FQDC +LE LDLS NR           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E +RLSTLP L RV   GNP+EAEE K YRV+VLSLLYQG+ GEL+      +A     +  G  GDG  R            + LDG+L SRKEL +L +L F  A   P
Sbjct:  441 SERPGMGRLQSGLGMGTPMLHWSLLESLSVCKCGLRELDSSLRLLPRVRRLSLANNRFSRVDFFQDCGSLEVLDLSHNRLNSVENIHAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKEAARLSTLPMLRRVWLNGNPVEAEEGKDYRVSVLSLLYQGRGGELK-----GVAGRFSTMLAGGSGDGSRRETG---------IALDGRLPSRKELVQLSQLCFPRAAEVP 666
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11999.1543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI3.750e-3753.88Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE1.390e-3556.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11999contigH-elongata_contig11999:3431..6997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue3e-35
Seed eggNOG ortholog2880.D8LMA8
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1250
Cds size1248
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11999.1543.1prot_H-elongata_contig11999.1543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11999 3433..6997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.4971707-CDS-H-elongata_contig11999:3432..35761622929703.4971707-CDS-H-elongata_contig11999:3432..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 3433..3576 -
1691679125.1367877-CDS-H-elongata_contig11999:3432..35761691679125.1367877-CDS-H-elongata_contig11999:3432..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 3433..3576 -
1622929703.5142362-CDS-H-elongata_contig11999:4402..46581622929703.5142362-CDS-H-elongata_contig11999:4402..4658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 4403..4658 -
1691679125.1458209-CDS-H-elongata_contig11999:4402..46581691679125.1458209-CDS-H-elongata_contig11999:4402..4658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 4403..4658 -
1622929703.537993-CDS-H-elongata_contig11999:5339..55551622929703.537993-CDS-H-elongata_contig11999:5339..5555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 5340..5555 -
1691679125.153058-CDS-H-elongata_contig11999:5339..55551691679125.153058-CDS-H-elongata_contig11999:5339..5555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 5340..5555 -
1622929703.5509036-CDS-H-elongata_contig11999:5988..61441622929703.5509036-CDS-H-elongata_contig11999:5988..6144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 5989..6144 -
1691679125.160384-CDS-H-elongata_contig11999:5988..61441691679125.160384-CDS-H-elongata_contig11999:5988..6144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 5989..6144 -
1622929703.5680683-CDS-H-elongata_contig11999:6521..69971622929703.5680683-CDS-H-elongata_contig11999:6521..6997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 6522..6997 -
1691679125.1704965-CDS-H-elongata_contig11999:6521..69971691679125.1704965-CDS-H-elongata_contig11999:6521..6997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11999 6522..6997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11999.1543.1

>prot_H-elongata_contig11999.1543.1 ID=prot_H-elongata_contig11999.1543.1|Name=mRNA_H-elongata_contig11999.1543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=416bp
ALLAPHAAPDDGWGVVAAAASLPSATQLTTARIPAFLMSAPSDRRSFDAV
VSSRASTRDGGRDGETVRGVVDGTVKSGIGGTVSDAELLVSDRREPVFSR
QGMARKRERQDVGDGGDRYLWRATASMEACSDGEDLAGLKLRLGTGTPAL
RWALLEVLSVRCCGLRELDPSLRLLPRVRRLSLAYNCIPSIEYFQDCAAL
EELDLSFNRIRSVENAHRVLGNLRSLNLQGNRLTRTLGLERVFSLEELDL
SRNGIRGLEEVSRLSTLPFLHRVAFAGNPLEAEERKQYRVTVLSLLYQGK
AGELERALALSIAQNGFILSTGVVGDGEGRAPRADSLGGAGTVVLDGKLS
SRKELSELVRLRFADAVMAPPSKHLKHPRAPEREGRGLQQQQQQQQQQSG
GQRHGIPARAPPSLSR
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mRNA from alignment at H-elongata_contig11999:3431..6997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11999.1543.1 ID=mRNA_H-elongata_contig11999.1543.1|Name=mRNA_H-elongata_contig11999.1543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3567bp|location=Sequence derived from alignment at H-elongata_contig11999:3431..6997- (Himanthalia elongata Himel1 dioecious)
GCCCTCCTGGCGCCTCACGCGGCTCCTGACGATGGCTGGGGCGTCGTAGC
CGCAGCGGCATCACTGCCGTCGGCGACGCAGCTAACGACCGCGCGGATCC
CGGCGTTTCTCATGAGCGCACCCAGCGATCGCCGCTCGTTCGATGCAGTG
GTCTCCTCTCGCGCGAGTACCCGCGATGGAGGCAGGGATGGCGAGACTGT
CCGTGGCGTTGTTGACGGGACTGTCAAAAGCGGTATAGGTGGGACTGTCA
GCGACGCCGAGCTTTTGGTATCGGATCGGCGCGAACCGGTGTTTTCACGT
CAAGGCATGGCACGAAAGAGAGAGCGGCAAGATGTAGGCGACGGTGGCGA
CAGATACCTTTGGAGAGCCACTGCATCGATGGAGGCGTGTTCGGACGGGG
AAGACCTCGCGGGCTTAAAGCTACGACTTGGCACTGGCACGCCAGCGCTC
CGCTGGGCTCTCCTTGAGGTGCTGAGGTGCGCGAGATATTAGTCGATTTT
AGGAATTAGTTTGTTTAGTTAGATGTCCAGAAGTATTTTTGGTGTTTCTT
ACTGACGTTTTGCCTTACTCGAGCATTTGCTTATTACCTGTGACTACGCC
CCGCTAAGGTATTCCGTAACGCCTCTTCGATTTTTGAGGTGTTCTGATCC
GCGGCGATCAAATCCGATCGCGATGGCCGTTTGTATGTAATCAGAACAAT
CTCTACGACGACGAGTCTTTCCTCCTCGAAGTTCTGACAATCAATAAATC
TTATCCATACTCCTCTTTTTCTCCACGATCTCTCCCCCTCCTCCTCCTTC
TCCTTCTTCTTCCCCACGACCCCCCCAAAAACCTCACGGACGTTCCAAAA
AAGTGTCCGTTGCTGCGGGCTTCGCGAGCTCGACCCCTCTCTTCGCCTCC
TCCCGAGAGTGCGGCGCCTGTCGCTAGCGTACAACTGCATCCCCTCGATC
GAATACTTCCAGGACTGCGCGGCCCTCGAGGAGCTAGACCTGAGTTTCAA
CAGAATCAGGTGAGATCGCAGAGAGGAAACATCCATCGGAGTAAGGAAAG
GAGAAAGCGCGAAGGGAAGAGGCCGGCGTTGTTTTGGGGGTTTTCTCGGA
ACGTTGCGGGAACGTTTTCGACCTTTCAAGGCTCCCCAAGTTCTCATGGT
TCTGAGGTTTTGTGCTTTCGCCCCCTGGGGACGGGTGATGTGGCTGTCGC
TTCCCCTGCTGTTACTGGTGCTGGACCTATCCCGCACCGACTATATCCCC
ACGAACGACTTAGAAAAGTAAATATTTTATTGTTTTACTGCAGTCGCAAT
GAACAGGAACGCTGCCGCGTGGGGGAGGTAGATAACGAAGGGAAGGAAGA
TGCCATAAATAACATGCTCCAAGTCGATTCTCCCTCACTCCCTCCCGATC
CCCCGACCCCCATGCGCGCGCGCGGACCCTGCGCTGGTGCAGATCTGTCG
AGAACGCTCATCGGGTGCTGGGCAATCTCCGCAGTCTCAACCTTCAAGGC
AACCGACTAACGAGGACGCTGGGACTCGAGCGCGTGTTTTCGCTGGAGGA
GCTCGATCTCTCGCGCAACGGAATCAGAGGACTCGAGGAAGTCTCGCGCC
TGTCGACGCTGCCGTTCCTGCACCGAGTAGCGTTCGCCGGAAACCCGCTC
GAGGCCGAGTAAGTGCGGGATTTTTTGGGGGGAGGGTGGAACGTTATTTT
GGGTTCTTCGTCTGGGAGCGGGTGCATCAATCTACCCACGGTTACGCGAT
TGATGTGGGTTTTCCTACAACCATGGGAGGGGGGGAGCGGCATTTTAGGG
CAAGCTTTTAACCCCGACGAATTATGTCCAAGAATTGAAAATATTTTTTT
GTCTGTTGTCGAGAAGGAATGGGAGAGATAGGGGATTCCTTCCCCGGCCT
GTGTGATATACTCTACTACAGTACACCCTGTCATATACGGTAGGAGGCAG
TTGGAGAGGGGGATGAATATATTCCGTCCCCGGCCTGTGTGATATACTCT
ACTACAGTATATCCTTTCATCTACGATAGGAGGCGGTAAGAAAGGGGGGA
TGAATATATTCCGTCCTCAGCCTGTGTGATATACTCTACTACAGTACACC
CTGTCATATACGGTAGGAGGCGGTAGGAGGGGGGGGGTGAAGAGATAGAG
GAACCGTAGCCCACTCCCACGTTCGTGGTGATACGTCCGTTTGGCCCATT
CAACATTGTGGCAAGCTGGAAGTTCTGCTCGCGCCGCCGCGGTTGTTGTT
ATCCCTAATTCTATCGGCGCATCGTTTTTGTTATCGCGTTAACCAACCTC
TGTGTCCCGCGCCCCCCTGCTTTGTCTTCGTCTTCCCAGAGAACGAAAAC
AATACCGCGTTACTGTGCTGAGCCTGTTGTACCAAGGGAAGGCCGGAGAA
CTAGAGAGGGCGCTCGCCCTCTCGATCGCACAAAACGGTTTCATCCTGAG
CACGGGCGTCGTTGGCGATGGCGAAGGTCGAGCCCCGAGGGCCGACTCGC
TAGGAGGAGCGGGGACCGTCGTGCTCGACGGGAAGCTCTCGTCTAGGAAG
GAGCTAAGCGAGCTAGTCCGCCTCCGTTTTGCTGACGCCGTGATGGTGAG
AATCGTCTGCGTTTTTTTCTTATTTTCTCTCCCATATTTTGCGATAGATA
GCAACCCCCACCAAGGGCCGTTGCGAAAAGTGAGGGTGGGGGTCTATCCG
GGAGTTCAAGGAGGGGGAGCGGGGGCTATCGAAGTAGCCCCTCATGGGAG
CGAGTGGTGTGATGCTCCGAATATATTTGATCCCTCCAGGGTTTTTTTAT
GAGATATTTCCGAAGAGACTATATTTTGCTAGTCTCCCCTGAACTCAGGA
GATAAATATCAGACATCCCCGCCTTTCGCTGAACGACTCAGAAAATATTG
AGGCGAGGTGAGGGACGGGGTGAGTGGGATGCTGATGATGTTAAAGAATT
TGACATTAAACGTACAGTAGCCAGATATAGTACTGAGCGGGAAGCGCGGT
GACCAGTTCGTGATCACAAAATCACACCTATGAAAGTGTACGTCCACTTG
AGCTATAGCTAGCTAGCTGCCTTTTGTTACATGAACAACTCCTACGTTCC
ATGGCGGGCGTCAGCGCCGGTGGTCATACAACTTCCTTCAGTCCTCCTCT
ATCCTCTCGTGCAGAGCTTGGTATGATTCGAGTATAGTTTCATTTAGCAT
AGCCCAGATAAGTTGGGTTGTTGCGGTGGCATATAGCCGCTTTTGGGCGT
GTCTAACGCCCAGCTAAAGCTTATCTATTCTCTGTACTCTATAAAACATA
CGAGGTGTAGATAGGAAGTTCTTATTTCTGGTGTACGAAACAGAGAGAAT
GATTCGGCGAGGCAAACGTTTACAGTGAAGGGGATCACGCCATGCACACT
CCTTCCTCATCCCTCCCGCAGGCACCCCCTTCCAAACACCTTAAACACCC
GAGGGCACCCGAAAGAGAAGGCCGAGGCCTGCAACAGCAGCAGCAGCAGC
AGCAGCAGCAGTCTGGGGGTCAGCGGCACGGTATCCCCGCTCGGGCTCCA
CCATCGCTTTCTCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig11999:3431..6997-

>mRNA_H-elongata_contig11999.1543.1 ID=mRNA_H-elongata_contig11999.1543.1|Name=mRNA_H-elongata_contig11999.1543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2496bp|location=Sequence derived from alignment at H-elongata_contig11999:3431..6997- (Himanthalia elongata Himel1 dioecious)
GCCCTCCTGGCGCCTCACGCGGCTCCTGACGATGGCTGGGGCGTCGTAGC
CGCAGCGGCATCACTGCCGTCGGCGACGCAGCTAACGACCGCGCGGATCC
CGGCGTTTCTCATGAGCGCACCCAGCGATCGCCGCTCGTTCGATGCAGTG
GTCTCCTCTCGCGCGAGTACCCGCGATGGAGGCAGGGATGGCGAGACTGT
CCGTGGCGTTGTTGACGGGACTGTCAAAAGCGGTATAGGTGGGACTGTCA
GCGACGCCGAGCTTTTGGTATCGGATCGGCGCGAACCGGTGTTTTCACGT
CAAGGCATGGCACGAAAGAGAGAGCGGCAAGATGTAGGCGACGGTGGCGA
CAGATACCTTTGGAGAGCCACTGCATCGATGGAGGCGTGTTCGGACGGGG
AAGACCTCGCGGGCTTAAAGCTACGACTTGGCACTGGCACGCCAGCGCTC
CGCTGGGCTCTCCTTGAGGTGCTGAGGCCCTCCTGGCGCCTCACGCGGCT
CCTGACGATGGCTGGGGCGTCGTAGCCGCAGCGGCATCACTGCCGTCGGC
GACGCAGCTAACGACCGCGCGGATCCCGGCGTTTCTCATGAGCGCACCCA
GCGATCGCCGCTCGTTCGATGCAGTGGTCTCCTCTCGCGCGAGTACCCGC
GATGGAGGCAGGGATGGCGAGACTGTCCGTGGCGTTGTTGACGGGACTGT
CAAAAGCGGTATAGGTGGGACTGTCAGCGACGCCGAGCTTTTGGTATCGG
ATCGGCGCGAACCGGTGTTTTCACGTCAAGGCATGGCACGAAAGAGAGAG
CGGCAAGATGTAGGCGACGGTGGCGACAGATACCTTTGGAGAGCCACTGC
ATCGATGGAGGCGTGTTCGGACGGGGAAGACCTCGCGGGCTTAAAGCTAC
GACTTGGCACTGGCACGCCAGCGCTCCGCTGGGCTCTCCTTGAGGTGCTG
AGTGTCCGTTGCTGCGGGCTTCGCGAGCTCGACCCCTCTCTTCGCCTCCT
CCCGAGAGTGCGGCGCCTGTCGCTAGCGTACAACTGCATCCCCTCGATCG
AATACTTCCAGGACTGCGCGGCCCTCGAGGAGCTAGACCTGAGTTTCAAC
AGAATCAGTGTCCGTTGCTGCGGGCTTCGCGAGCTCGACCCCTCTCTTCG
CCTCCTCCCGAGAGTGCGGCGCCTGTCGCTAGCGTACAACTGCATCCCCT
CGATCGAATACTTCCAGGACTGCGCGGCCCTCGAGGAGCTAGACCTGAGT
TTCAACAGAATCAGATCTGTCGAGAACGCTCATCGGGTGCTGGGCAATCT
CCGCAGTCTCAACCTTCAAGGCAACCGACTAACGAGGACGCTGGGACTCG
AGCGCGTGTTTTCGCTGGAGGAGCTCGATCTCTCGCGCAACGGAATCAGA
GGACTCGAGGAAGTCTCGCGCCTGTCGACGCTGCCGTTCCTGCACCGAGT
AGCGTTCGCCGGAAACCCGCTCGAGGCCGAATCTGTCGAGAACGCTCATC
GGGTGCTGGGCAATCTCCGCAGTCTCAACCTTCAAGGCAACCGACTAACG
AGGACGCTGGGACTCGAGCGCGTGTTTTCGCTGGAGGAGCTCGATCTCTC
GCGCAACGGAATCAGAGGACTCGAGGAAGTCTCGCGCCTGTCGACGCTGC
CGTTCCTGCACCGAGTAGCGTTCGCCGGAAACCCGCTCGAGGCCGAAGAA
CGAAAACAATACCGCGTTACTGTGCTGAGCCTGTTGTACCAAGGGAAGGC
CGGAGAACTAGAGAGGGCGCTCGCCCTCTCGATCGCACAAAACGGTTTCA
TCCTGAGCACGGGCGTCGTTGGCGATGGCGAAGGTCGAGCCCCGAGGGCC
GACTCGCTAGGAGGAGCGGGGACCGTCGTGCTCGACGGGAAGCTCTCGTC
TAGGAAGGAGCTAAGCGAGCTAGTCCGCCTCCGTTTTGCTGACGCCGTGA
TGAGAACGAAAACAATACCGCGTTACTGTGCTGAGCCTGTTGTACCAAGG
GAAGGCCGGAGAACTAGAGAGGGCGCTCGCCCTCTCGATCGCACAAAACG
GTTTCATCCTGAGCACGGGCGTCGTTGGCGATGGCGAAGGTCGAGCCCCG
AGGGCCGACTCGCTAGGAGGAGCGGGGACCGTCGTGCTCGACGGGAAGCT
CTCGTCTAGGAAGGAGCTAAGCGAGCTAGTCCGCCTCCGTTTTGCTGACG
CCGTGATGGCACCCCCTTCCAAACACCTTAAACACCCGAGGGCACCCGAA
AGAGAAGGCCGAGGCCTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGTC
TGGGGGTCAGCGGCACGGTATCCCCGCTCGGGCTCCACCATCGCTTTCTC
GGGCACCCCCTTCCAAACACCTTAAACACCCGAGGGCACCCGAAAGAGAA
GGCCGAGGCCTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGTCTGGGGG
TCAGCGGCACGGTATCCCCGCTCGGGCTCCACCATCGCTTTCTCGG
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