mRNA_H-elongata_contig7740.15416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7740.15416.1
Unique NamemRNA_H-elongata_contig7740.15416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.930e-46
Identity = 89/214 (41.59%), Postives = 133/214 (62.15%), Query Frame = 3
Query:  327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLN 956
            EE+  +P+RE +G LMW A  TRP+IA+AAR V R+C +P   H +A + I+ Y++ T D G+T+G G   GL ME + D D+ +    RR V G  +M  +G ISW+SR Q+     T+EAEY++L + +KEV+FL Q   FM P   +  + VFEDN+GAI+LA    S   +++ +V+HH + +    +++ + YV S  Q AD LTK L+
Sbjct:   65 EEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALH 278          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.080e-45
Identity = 90/218 (41.28%), Postives = 133/218 (61.01%), Query Frame = 3
Query:  327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASGRT-RYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
            EE+  +P+RE +G LMW A  TRPDIA+A R V R+C +P   H +A + I+ Y++ T D G+T+  G   GL ME + D D+ +    RR V G ++M   G +SW+SR QK     T+EAEY++L + +KEV+FL Q   F+ P   +  + V EDN+GAI+LA    S  T ++I+V+HH +R+    +++ + +V S  Q AD LTK LN   F
Sbjct:   26 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDF 243          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.980e-45
Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 3
Query:  327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
            EE+  +P+RE +G LMW A  TRPDIA+A R V R+C +P   H +A + I+ Y++ T D G+T+  G   GL ME + D D+ +    RR V G ++M   G ISW+SR QK     T+EAEY++L + +KEV+FL Q   FM P   +  + VFEDN+GAI+LA    S   +++I+V+HH +R+    +++ + +V S  Q AD LTK L+   F
Sbjct:  210 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 8.710e-45
Identity = 109/305 (35.74%), Postives = 164/305 (53.77%), Query Frame = 3
Query:  150 DDILSHAKNQAKMDRFVTELGQMVRLKDMGD--------------ASSTSRRQARYRV---------------VPTLSKANEPRNPEKEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASGRT-RYINVKHHMVRDASDAQK-VRVAYVRSEDQLADLLTKPLNTK 962
            DDI S  + + + D+F  +L  MVR+K++GD              A +    Q  Y                 +P   K +E    + EE+  +P+RE +G LMW A  TRPDIA+A R V R+C +P   H +A + I+ Y++ T D G+T+  G   GL ME + D D+ +    RR V G ++M   G ISW+SR QK     T+EAEY++L + +KEV+FL Q   FM P   +  + VFEDN+GAI+LA    S    ++I+V+HH +R+    +K + + +V S  Q AD LT+ L ++
Sbjct:   24 DDIFSIGEEE-RYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMKLSE--FDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRALTSR 325          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3VC18_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VC18_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.850e-45
Identity = 89/219 (40.64%), Postives = 134/219 (61.19%), Query Frame = 3
Query:  315 NPEKEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSM-RVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKR 965
            N E+E MK  PYR  +G L++    TRPD+A     + RF ENPG  H KA +++++YL  TKD G+ Y      + +EAYTD D+G+ LD RR V G ++M+    + + S+ Q+  A  ++EAEY+ L    +EV++      +    +VGA  V+EDN+GAI LA+    + RT++++++HH +R+      V V YV +ED+LADLLTK L TKR
Sbjct:   54 NAEREAMKTKPYRSLIGCLLYITTRTRPDVAYIVTQLSRFVENPGHQHWKAAIRVLRYLKSTKDLGIIYNSNDGKVMLEAYTDADWGSNLDDRRSVCGIMIMIGGAPVVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIVTVDYVGTEDRLADLLTKALGTKR 272          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 8.170e-44
Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 3
Query:  327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
            EE+  +P+RE +G LMW A  TRPDIA+A R V R+C +P   H +A + I+ Y++ T D G+T+  G   GL ME + D D+ +    RR V G ++M   G ISW+SR QK     T+EAEY++L + +KEV+FL Q   FM P   +  + VFEDN+GAI+LA    S   +++I+V+HH +R+    +++ + +V S  Q AD LTK L+   F
Sbjct:  384 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.680e-43
Identity = 94/227 (41.41%), Postives = 142/227 (62.56%), Query Frame = 3
Query:  291 LSKANEPRNPE-KEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFME-PSMRVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTK 962
            L+KA+EP+  E K +MK  PYR  VG LM+ A  TRPDI+ A   + RF ENPG  H  A +K+++YLL TKD G+ Y G   G  +EAY+D D+    D RR V G +LML    + W S  QK  A  ++EAEY+ L + VKE +++ +   +  + +VGA  ++EDN+GA+ LA       RT++I++++H +R+   + +V + YV + +QLAD +TK L++K
Sbjct:   80 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 159 bits (401), Expect = 2.010e-43
Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = 3
Query:  345 PYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSMR-VGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
            PYREAVG LM+ A+  RPDIA A   V RF  N G  H  AV +IM+YL HTKD G+ Y        +  ++D D+ + +DTR+   G V  +A GAI+W SR Q+ T+  T+EAEY+   EA KE I+L     E S + +  V ++ DN+ AIKL        RT++I+V++H +++      +++ YVRSEDQLAD+LTKPL + +F
Sbjct:   36 PYREAVGSLMFAAITARPDIAFAVNVVSRFQNNQGAPHWNAVKRIMRYLKHTKDLGIRYTFSD--EPVHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKF 243          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3SPB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPB0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.290e-43
Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 3
Query:  291 LSKANEPRNPE-KEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFME-PSMRVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTK 962
            L+KA+EP+  E K +MK  PYR  VG LM+ A  TRPDI+ A   + RF ENPG  H  A +K+++YLL TKD G+ Y G   G  +EAY+D D+    D RR V G +LML    + W S  QK  A  ++E EY+ L + VKE +++ +  +   + +VGA  ++EDN+GA+ LA       RT++I++++H +R+   + +V + YV +++QLAD +TK L++K
Sbjct:   39 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEGEYMALSDCVKECVWMRRLLVGIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGLSSK 264          
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395)

HSP 1 Score: 158 bits (400), Expect = 2.910e-43
Identity = 87/205 (42.44%), Postives = 123/205 (60.00%), Query Frame = 3
Query:  342 FPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSMRVGAVNVFEDNKGAIKLATK-HASGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPL 953
             PYREAVG L++ A +TRPDI  A  TV +F +N    H  AV KI +YL+ T D G+ YG  G    +  YTD D+  C DTRR   G V ML    +SW S+ Q   +  T+EAEYI L   VKE I+L +   E  ++  +V +  DN+ AIKLA+      RT++I V++H +R+  +   + +AYV++++QLAD+ TKPL
Sbjct:   31 IPYREAVGSLLFAARVTRPDIEYAVNTVSQFVDNYNNTHWSAVKKIFRYLVGTIDCGIIYGASGSDESLVGYTDADYAGCPDTRRSRSGYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQFESVPMNVDNQSAIKLASNPEFHKRTKHIEVRYHFIREVVEKGTIVLAYVKTQEQLADIFTKPL 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE4.930e-4641.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE1.080e-4541.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE4.980e-4541.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE8.710e-4535.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3VC18_9STRA8.850e-4540.64Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A6H5KQB8_9PHAE8.170e-4441.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GI70_9STRA1.680e-4341.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1N3K4_PHOPY2.010e-4343.33Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A6A3SPB0_9STRA2.290e-4340.97Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
UPI001D00A3952.910e-4342.44secreted RxLR effector protein 161-like n=2 Tax=Co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7740contigH-elongata_contig7740:2203..3261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue5.4e-18
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size968
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7740.15416.1prot_H-elongata_contig7740.15416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7740 2572..3076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.6461987-UTR-H-elongata_contig7740:2202..25711622931179.6461987-UTR-H-elongata_contig7740:2202..2571Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7740 2203..2571 -
1691679730.8654008-UTR-H-elongata_contig7740:2202..25711691679730.8654008-UTR-H-elongata_contig7740:2202..2571Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7740 2203..2571 -
1622931179.6960764-UTR-H-elongata_contig7740:3076..32611622931179.6960764-UTR-H-elongata_contig7740:3076..3261Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7740 3077..3261 -
1691679730.9017625-UTR-H-elongata_contig7740:3076..32611691679730.9017625-UTR-H-elongata_contig7740:3076..3261Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7740 3077..3261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.6670146-CDS-H-elongata_contig7740:2571..29231622931179.6670146-CDS-H-elongata_contig7740:2571..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7740 2572..2923 -
1691679730.8768709-CDS-H-elongata_contig7740:2571..29231691679730.8768709-CDS-H-elongata_contig7740:2571..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7740 2572..2923 -
1622931179.682726-CDS-H-elongata_contig7740:3014..30761622931179.682726-CDS-H-elongata_contig7740:3014..3076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7740 3015..3076 -
1691679730.8873951-CDS-H-elongata_contig7740:3014..30761691679730.8873951-CDS-H-elongata_contig7740:3014..3076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7740 3015..3076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7740.15416.1

>prot_H-elongata_contig7740.15416.1 ID=prot_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MDRFVTELGQMVRLKDMGDASSTSRRQARYRVVPTLSKANEPRNPEKEEM
KKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQ
YLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*
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mRNA from alignment at H-elongata_contig7740:2203..3261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7740.15416.1 ID=mRNA_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1059bp|location=Sequence derived from alignment at H-elongata_contig7740:2203..3261- (Himanthalia elongata Himel1 dioecious)
CTGAACAAGGCCATTTACGGATTCGTACAGGCAGGGAGGTGCTGGAACAA CAAGTTTTGCGACGCCATGACGACGATTGGATTCAAGCAGGCAAAGGCGG ATCCGTGCGTGTTCCACAAGGTCGTTGACTGCGAGGCGGAAGTGGTGGTG ACGATATTCTTTCCCACGCCAAAAACCAAGCGAAGATGGATAGATTCGTG ACTGAGCTTGGACAGATGGTCAGATTGAAGGACATGGGCGACGCCAGGTA CTACATGAGCTGTCACAATACTAGGAACCGCAAGGCACGCGAGTTGAAGA TCGATCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACATCAAG AAGGCAAGCAAGATACCGAGTGGTGCCAACACTTTCAAAGGCGAACGAAC CGCGGAATCCAGAGAAGGAGGAAATGAAGAAGTTTCCATACCGAGAGGCA GTAGGGGTGCTTATGTGGACGGCGATGATGACACGGCCGGACATTGCGAG CGCAGCACGGACTGTGGTCAGGTTCTGCGAAAACCCTGGGCCGGCGCATA AGAAGGCCGTGATGAAAATCATGCAGTATCTCCTTCACACGAAGGATTGG GGGGTTACATATGGTGGACAGGGCTGTGGACTCTGCATGGAGGCATATAC GGACCCGGATTTCGGGGCCTGCCTGGATACGAGGCGCTAGGTTGTTGGTG CGGTGTTGATGCTGGCGAAAGGGGCGATCAGCTGGTACTCAAGGATGCAA AAAGGGACAGCATCGGGTACCTCGGAGGCAGAGTACATTACGTTATAAGA GGCGGTAAAGGAGGTTATATTTTTATGACAGGAGTTCATGGAACCGTCGA TGAGGGTTGGTGCAGTGAATGTGTTCGAGGACAATAAGGGGGCCATCAAG CTGGCCACCAAGCATGCTAGTGGTAGGACAAGGTACATTAATGTGAAACA CCATATGGTGAGGGACGCGTCTGACGCGCAAAAGGTTAGAGTAGCGTATG TGAGGTCAGAAGATCAGCTCGCGGACTTGCTCACCAAGCCGCTAAACACG AAGAGATTT
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Coding sequence (CDS) from alignment at H-elongata_contig7740:2203..3261-

>mRNA_H-elongata_contig7740.15416.1 ID=mRNA_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig7740:2203..3261- (Himanthalia elongata Himel1 dioecious)
ATGGATAGATTCGTGACTGAGCTTGGACAGATGGTCAGATTGAAGGACAT
GGGCGACGCCAGATGGATAGATTCGTGACTGAGCTTGGACAGATGGTCAG
ATTGAAGGACATGGGCGACGCCAGTTCGACATCAAGAAGGCAAGCAAGAT
ACCGAGTGGTGCCAACACTTTCAAAGGCGAACGAACCGCGGAATCCAGAG
AAGGAGGAAATGAAGAAGTTTCCATACCGAGAGGCAGTAGGGGTGCTTAT
GTGGACGGCGATGATGACACGGCCGGACATTGCGAGCGCAGCACGGACTG
TGGTCAGGTTCTGCGAAAACCCTGGGCCGGCGCATAAGAAGGCCGTGATG
AAAATCATGCAGTATCTCCTTCACACGAAGGATTGGGGGGTTACATATGG
TGGACAGGGCTGTGGACTCTGCATGGAGGCATATACGGACCCGGATTTCG
GGGCCTGCCTGGATACGAGGCGCTAGTTCGACATCAAGAAGGCAAGCAAG
ATACCGAGTGGTGCCAACACTTTCAAAGGCGAACGAACCGCGGAATCCAG
AGAAGGAGGAAATGAAGAAGTTTCCATACCGAGAGGCAGTAGGGGTGCTT
ATGTGGACGGCGATGATGACACGGCCGGACATTGCGAGCGCAGCACGGAC
TGTGGTCAGGTTCTGCGAAAACCCTGGGCCGGCGCATAAGAAGGCCGTGA
TGAAAATCATGCAGTATCTCCTTCACACGAAGGATTGGGGGGTTACATAT
GGTGGACAGGGCTGTGGACTCTGCATGGAGGCATATACGGACCCGGATTT
CGGGGCCTGCCTGGATACGAGGCGCTAG
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