mRNA_H-elongata_contig7740.15416.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.930e-46 Identity = 89/214 (41.59%), Postives = 133/214 (62.15%), Query Frame = 3
Query: 327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLN 956
EE+ +P+RE +G LMW A TRP+IA+AAR V R+C +P H +A + I+ Y++ T D G+T+G G GL ME + D D+ + RR V G +M +G ISW+SR Q+ T+EAEY++L + +KEV+FL Q FM P + + VFEDN+GAI+LA S +++ +V+HH + + +++ + YV S Q AD LTK L+
Sbjct: 65 EEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALH 278
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.080e-45 Identity = 90/218 (41.28%), Postives = 133/218 (61.01%), Query Frame = 3
Query: 327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASGRT-RYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
EE+ +P+RE +G LMW A TRPDIA+A R V R+C +P H +A + I+ Y++ T D G+T+ G GL ME + D D+ + RR V G ++M G +SW+SR QK T+EAEY++L + +KEV+FL Q F+ P + + V EDN+GAI+LA S T ++I+V+HH +R+ +++ + +V S Q AD LTK LN F
Sbjct: 26 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDF 243
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 168 bits (425), Expect = 4.980e-45 Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 3
Query: 327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
EE+ +P+RE +G LMW A TRPDIA+A R V R+C +P H +A + I+ Y++ T D G+T+ G GL ME + D D+ + RR V G ++M G ISW+SR QK T+EAEY++L + +KEV+FL Q FM P + + VFEDN+GAI+LA S +++I+V+HH +R+ +++ + +V S Q AD LTK L+ F
Sbjct: 210 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 164 bits (416), Expect = 8.710e-45 Identity = 109/305 (35.74%), Postives = 164/305 (53.77%), Query Frame = 3
Query: 150 DDILSHAKNQAKMDRFVTELGQMVRLKDMGD--------------ASSTSRRQARYRV---------------VPTLSKANEPRNPEKEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASGRT-RYINVKHHMVRDASDAQK-VRVAYVRSEDQLADLLTKPLNTK 962
DDI S + + + D+F +L MVR+K++GD A + Q Y +P K +E + EE+ +P+RE +G LMW A TRPDIA+A R V R+C +P H +A + I+ Y++ T D G+T+ G GL ME + D D+ + RR V G ++M G ISW+SR QK T+EAEY++L + +KEV+FL Q FM P + + VFEDN+GAI+LA S ++I+V+HH +R+ +K + + +V S Q AD LT+ L ++
Sbjct: 24 DDIFSIGEEE-RYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMKLSE--FDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRALTSR 325
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3VC18_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VC18_9STRA) HSP 1 Score: 163 bits (413), Expect = 8.850e-45 Identity = 89/219 (40.64%), Postives = 134/219 (61.19%), Query Frame = 3
Query: 315 NPEKEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSM-RVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKR 965
N E+E MK PYR +G L++ TRPD+A + RF ENPG H KA +++++YL TKD G+ Y + +EAYTD D+G+ LD RR V G ++M+ + + S+ Q+ A ++EAEY+ L +EV++ + +VGA V+EDN+GAI LA+ + RT++++++HH +R+ V V YV +ED+LADLLTK L TKR
Sbjct: 54 NAEREAMKTKPYRSLIGCLLYITTRTRPDVAYIVTQLSRFVENPGHQHWKAAIRVLRYLKSTKDLGIIYNSNDGKVMLEAYTDADWGSNLDDRRSVCGIMIMIGGAPVVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRAMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRENVARDIVTVDYVGTEDRLADLLTKALGTKR 272
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 168 bits (425), Expect = 8.170e-44 Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 3
Query: 327 EEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYG-GQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*Q--EFMEPSMRVGAVNVFEDNKGAIKLATKHASG-RTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
EE+ +P+RE +G LMW A TRPDIA+A R V R+C +P H +A + I+ Y++ T D G+T+ G GL ME + D D+ + RR V G ++M G ISW+SR QK T+EAEY++L + +KEV+FL Q FM P + + VFEDN+GAI+LA S +++I+V+HH +R+ +++ + +V S Q AD LTK L+ F
Sbjct: 384 EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.680e-43 Identity = 94/227 (41.41%), Postives = 142/227 (62.56%), Query Frame = 3
Query: 291 LSKANEPRNPE-KEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFME-PSMRVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTK 962
L+KA+EP+ E K +MK PYR VG LM+ A TRPDI+ A + RF ENPG H A +K+++YLL TKD G+ Y G G +EAY+D D+ D RR V G +LML + W S QK A ++EAEY+ L + VKE +++ + + + +VGA ++EDN+GA+ LA RT++I++++H +R+ + +V + YV + +QLAD +TK L++K
Sbjct: 80 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 159 bits (401), Expect = 2.010e-43 Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = 3
Query: 345 PYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSMR-VGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTKRF 968
PYREAVG LM+ A+ RPDIA A V RF N G H AV +IM+YL HTKD G+ Y + ++D D+ + +DTR+ G V +A GAI+W SR Q+ T+ T+EAEY+ EA KE I+L E S + + V ++ DN+ AIKL RT++I+V++H +++ +++ YVRSEDQLAD+LTKPL + +F
Sbjct: 36 PYREAVGSLMFAAITARPDIAFAVNVVSRFQNNQGAPHWNAVKRIMRYLKHTKDLGIRYTFSD--EPVHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKF 243
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: A0A6A3SPB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPB0_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.290e-43 Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 3
Query: 291 LSKANEPRNPE-KEEMKKFPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFME-PSMRVGAVNVFEDNKGAIKLATKHA-SGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPLNTK 962
L+KA+EP+ E K +MK PYR VG LM+ A TRPDI+ A + RF ENPG H A +K+++YLL TKD G+ Y G G +EAY+D D+ D RR V G +LML + W S QK A ++E EY+ L + VKE +++ + + + +VGA ++EDN+GA+ LA RT++I++++H +R+ + +V + YV +++QLAD +TK L++K
Sbjct: 39 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEGEYMALSDCVKECVWMRRLLVGIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGLSSK 264
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Match: UPI001D00A395 (secreted RxLR effector protein 161-like n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D00A395) HSP 1 Score: 158 bits (400), Expect = 2.910e-43 Identity = 87/205 (42.44%), Postives = 123/205 (60.00%), Query Frame = 3
Query: 342 FPYREAVGVLMWTAMMTRPDIASAARTVVRFCENPGPAHKKAVMKIMQYLLHTKDWGVTYGGQGCGLCMEAYTDPDFGACLDTRR*VVGAVLMLAKGAISWYSRMQKGTASGTSEAEYITL*EAVKEVIFL*QEFMEPSMRVGAVNVFEDNKGAIKLATK-HASGRTRYINVKHHMVRDASDAQKVRVAYVRSEDQLADLLTKPL 953
PYREAVG L++ A +TRPDI A TV +F +N H AV KI +YL+ T D G+ YG G + YTD D+ C DTRR G V ML +SW S+ Q + T+EAEYI L VKE I+L + E ++ +V + DN+ AIKLA+ RT++I V++H +R+ + + +AYV++++QLAD+ TKPL
Sbjct: 31 IPYREAVGSLLFAARVTRPDIEYAVNTVSQFVDNYNNTHWSAVKKIFRYLVGTIDCGIIYGASGSDESLVGYTDADYAGCPDTRRSRSGYVFMLNNAPVSWCSKKQNIVSLSTTEAEYIALGHGVKEAIWLKRMLKELGIQFESVPMNVDNQSAIKLASNPEFHKRTKHIEVRYHFIREVVEKGTIVLAYVKTQEQLADIFTKPL 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7740.15416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7740.15416.1 >prot_H-elongata_contig7740.15416.1 ID=prot_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MDRFVTELGQMVRLKDMGDASSTSRRQARYRVVPTLSKANEPRNPEKEEMback to top mRNA from alignment at H-elongata_contig7740:2203..3261- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7740.15416.1 ID=mRNA_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1059bp|location=Sequence derived from alignment at H-elongata_contig7740:2203..3261- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7740:2203..3261- >mRNA_H-elongata_contig7740.15416.1 ID=mRNA_H-elongata_contig7740.15416.1|Name=mRNA_H-elongata_contig7740.15416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig7740:2203..3261- (Himanthalia elongata Himel1 dioecious)back to top |