mRNA_H-elongata_contig76722.15343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76722.15343.1
Unique NamemRNA_H-elongata_contig76722.15343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 6.120e-57
Identity = 133/260 (51.15%), Postives = 169/260 (65.00%), Query Frame = 1
Query:    4 SLRRARALGKAL-EAGD-VKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE--EERRLMYVGMTRAKARLFLSCRDERTEI-------TPTGLKRRGASPSRFIADIPKSIVRTIDR 750
            S+ R RAL +A  E GD ++GP+KAQ+ +L +FA LLC+LRV +ATQ +PEL R +++ T M+++V  TLSTTGP+EG DRW NV+ELERAA++ +FS      AL  FL E +L+  +D E                   G + S    P VK P IQ+MTVHASKGLEFDTVF+ G EEGTFPM +   DDE  EERRLMYVGMTRAKARLFL+ R +R            TG +   A  SRF+ DIP++IVRTID+
Sbjct:  693 SVLRVRALREAFSERGDEIEGPTKAQANKLRVFARLLCRLRVASATQTVPELLRTVLEETGMRKHVTETLSTTGPAEGEDRWQNVVELERAASNPKFSGTAGDGALVAFLNEVSLVGGDDPEXXXXXXXXXXXXXXXXXXXGGQASPV--PGVKPPMIQLMTVHASKGLEFDTVFVAGCEEGTFPM-KDTTDDEMDEERRLMYVGMTRAKARLFLTWRRKRMVFGQSWGKRDKTGAQIMDADRSRFLDDIPRNIVRTIDK 949          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A835Z3L0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.790e-27
Identity = 101/280 (36.07%), Postives = 141/280 (50.36%), Query Frame = 1
Query:    1 VSLRRARALGKALEAGDVKGPS-KAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLS------TTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLR--------------KDIDDEEERRLMYVGMTRAKARLFLSCRDERTEITPTG---------LKRRGASPSRFIADIPKS-IVRTID 747
            VSLRR  AL     A  +  P  K  +++LA FA LL  L+  +A   +  +   +V  TDM+EYV    S        G  +G +RW NV+EL R+A     + A  L+A   FL E ALM  ++A R                G G   S    P      +++MT+HASKGLEFDTVF+ G EEGT P+ R                +++ EERRLMYV +TRAK+RLF+S R   T ++  G         ++   A PSR++ D+PKS +V+ +D
Sbjct:  753 VSLRRVAAL----RASALTTPRLKPLTRKLADFASLLVSLKQRSAQGTVAAVLEHLVAITDMEEYVKRARSGDPDPKAGGLDKGEERWGNVVELVRSAERTSAAGAAGLAA---FLAEVALMGGDEAPRSG--------------GSGGPDSDSDSPAAVSEVVRLMTIHASKGLEFDTVFIVGCEEGTLPLERGGGYKNRGGXXXXXXXVEEAEERRLMYVAITRAKSRLFMSWRRTLTILSGAGADGDAGGGGMRCIDAYPSRYLEDLPKSGVVKHLD 1011          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A0F9I4L6_9ZZZZ (DNA helicase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9I4L6_9ZZZZ)

HSP 1 Score: 114 bits (285), Expect = 3.730e-24
Identity = 91/252 (36.11%), Postives = 125/252 (49.60%), Query Frame = 1
Query:   85 LAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRK-DIDD----EEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGAS--PSRFIADIPKSIVRTIDRR-TATMSRELGNRHPQGAAADRV 816
            L  F GLL +L  VA  + + EL   ++D T  +EY++G    + P +G +RW NV EL   A   ++ +     AL +FL++ AL++  D   E                             K   + ++T+HA+KGLEF TVF+ G+EEG  P +R  +  D    EEERRL YVGMTRAK  L+L  R  R     TG    G    PSRF+ADIP  ++   +R  T T+   L  RH  GAAA  V
Sbjct:  311 LLRFLGLLNELIAVAKKESLSELLDTVIDRTGYREYLLGEERGSLP-DGEERWENVQELRAVAA--QYDELKPEHALPSFLEDAALITDVDEYDE-----------------------------KADAVTLITLHAAKGLEFPTVFIAGLEEGLLPHMRSLESGDPAQLEEERRLCYVGMTRAKEHLYL-IRAFRRSFGRTGAGFGGGHNPPSRFLADIPPELIAQPERADTPTL---LPQRHRYGAAAQPV 526          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: UPI001AC16E27 (ATP-dependent DNA helicase PcrA n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC16E27)

HSP 1 Score: 114 bits (285), Expect = 6.000e-24
Identity = 94/261 (36.02%), Postives = 127/261 (48.66%), Query Frame = 1
Query:   79 KRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDD---EEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVR------TIDRRTATM----SRELGNRHPQGAAADRVWR 822
            K L  FA LL  LR V + + +P+L   I+  T   EY+       G  EG DRW NV EL RA    +F+ A T +AL  +L+E AL++  D  R+ ++                            P +  MT+H++KGLE+  VF+ G+EEG FP  R   D    EEERRL YVG+TRAK RL+L     RT    T        PSRF+ADIP+ ++       T DRR A+     +R++G       A  RV R
Sbjct:  473 KVLLAFAKLLDDLRAVQSEKNLPDLIDMIITRTAFDEYIRD-----GTEEGEDRWGNVQELRRAVK--KFAGAPTETALPQYLEEVALIADIDTLRDDQD---------------------------APAL--MTLHSAKGLEYAVVFIIGLEEGLFPHSRALEDPAQMEEERRLCYVGITRAKQRLYLVNAFRRT----TYGNSEANDPSRFLADIPRELLAAQSGRTTDDRRPASARARSARDMGEDFDDDVAPRRVSR 693          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7W6F8_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7W6F8_9CHLR)

HSP 1 Score: 113 bits (282), Expect = 1.600e-23
Identity = 99/280 (35.36%), Postives = 139/280 (49.64%), Query Frame = 1
Query:   46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTIDRRTATMSRELGNRHPQGAAADRVWRDLRSESPRRRRGGEWGEG 876
            G+V G        LA  A ++ +LR   AT  +PEL  A+   T ++ +    L++ GP EG +RW N+LEL   ++  RF +   L AL+ FL+ETAL++ +D    S E                             R+ ++T+HA+KGLE+ TVF++G+ EG FP  R  +D E   EERRL YVG+TRAK RL LS    R      G      +PSRF+ +IP  ++  ID    T + E G+       + RV R  RSE      GG W EG
Sbjct:  493 GEVPGLMPRAKSALASVAAIVDRLRDRVATLDLPELLDAVYGDTGLRAH----LASEGP-EGEERWQNLLELRGISS--RFLELAPLDALDRFLEETALVADQDQLDTSAE-----------------------------RVTLITLHAAKGLEWPTVFISGLSEGLFPHSRAIMDHEQMEEERRLCYVGITRAKRRLVLSYAIRR------GWGDGDGAPSRFLDEIPPELLE-ID----TDAAERGDGETSFGRS-RV-RGFRSERSALGGGGAWREG 723          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7W1W5_9CHLR (DNA helicase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7W1W5_9CHLR)

HSP 1 Score: 112 bits (279), Expect = 3.820e-23
Identity = 95/283 (33.57%), Postives = 138/283 (48.76%), Query Frame = 1
Query:   46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTIDRRTATMSRELGNRHPQGAAADRVWRDLRSESPRRRRGGEWGEGGSD 885
            G+++G S      LA  A ++ +LR   A   +PEL  A+   T ++ +    L+  G  EG +RW N+LEL   A   RF + + L AL+ FL+ETAL++ +DA                               V L R+ ++T+HA+KGLE+  VF++G+ EG FP  R   D E   EERRL YVG+TRAKARL+LS    R+     G      +PSRF+ +IP+ ++ + +        E   R  + AA  R  R   +       GG W EG  D
Sbjct:  491 GELQGISPRARTALAGVAAIVERLRSRLALVDLPELLDAVYSETGLRAH----LAAEGV-EGEERWANLLELRGIAG--RFLELEPLDALDRFLEETALVADQDALE-----------------------------VDLDRVTLITLHAAKGLEWPAVFISGLTEGLFPHSRALEDREQMEEERRLCYVGITRAKARLYLSYALRRSWGAGDG------APSRFLEEIPEELLESAN--------EDDPRTGEAAAFGRGARGFAAARGGIGGGGAWREGSGD 723          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7VUJ6_9CHLR (DNA helicase n=1 Tax=Candidatus Aquidulcis sp. TaxID=2802963 RepID=A0A3L7VUJ6_9CHLR)

HSP 1 Score: 110 bits (274), Expect = 7.060e-23
Identity = 90/271 (33.21%), Postives = 137/271 (50.55%), Query Frame = 1
Query:   46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTI---DRRTATMSR----ELGNRHPQ-GAAADRVWRD 825
            G+V G +    K LA   G++ +LR   A   +PEL  A+   T ++ +    L++ G  +G +RW N+LEL   A   RF + + L AL+ F++ETAL++ +D+  +  E                             R+ ++T+HA+KGLE+ TVF++G+ EG FP  R  +D+E   EERRL YVG+TRAK RL L+    R      G+      PSRF+A+IP  ++      D RT   +R      G R  + G A+   WR+
Sbjct:   97 GEVLGAAPKARKALAEVDGMISRLRGRLALIELPELLDAVYSETGLRAH----LASEG-IDGEERWANLLELRGIAG--RFLELEPLDALDRFIEETALVADQDSIEDESE-----------------------------RVTLITMHAAKGLEWPTVFISGLTEGLFPHSRALMDEEQMEEERRLCYVGITRAKRRLTLTYAIRRGWGDGEGV------PSRFLAEIPDELLEVANDEDPRTDGTTRFGRGVAGYRSARSGFASGEAWRE 325          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A535RN30_9CHLR (DNA helicase n=2 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A535RN30_9CHLR)

HSP 1 Score: 110 bits (276), Expect = 8.750e-23
Identity = 95/281 (33.81%), Postives = 122/281 (43.42%), Query Frame = 1
Query:   73 QSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGT----LSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDEE---ERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSI--VRTIDRR----------TATMSRELGNRHPQG---AAADRVWRDLRSESPRR 849
            Q + L  FA LL  LR +A T  +  L   IV     + Y+ G       T G  EG +RW NVLEL   A    +S+      L  FL+E AL+S  D+ RE                               P + ++T+HA KGLEF  VFLTG+EEG FP  R    +EE   ERRL YVG+TRAK R +L+    RT    T       +PSRF+ ++P     VR   R+          T    RE   R  Q    A     WR    ++PRR
Sbjct:  456 QRQELRSFADLLDGLRALAPTVPLTTLVDRIVAAVGFESYLRGASRAGAPTPGSEEGEERWENVLELRGVA--EEYSELPPAEQLPRFLEEVALVSDVDSYREG-----------------------------APAVTLITLHAVKGLEFPVVFLTGMEEGVFPHARSSESEEELEEERRLCYVGITRAKDRCYLTYSSVRTLFGRT----TEMAPSRFLLELPTEQIDVRATPRQERNTWGELYETEPYERERQRRGRQDRALAGLSAAWRGAPDKAPRR 701          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A3L7YP49_9CHLR (DNA helicase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3L7YP49_9CHLR)

HSP 1 Score: 110 bits (274), Expect = 1.720e-22
Identity = 83/233 (35.62%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   46 GDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDE---EERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIV 735
            G+V G S      LA  A ++ +LR       +PEL  A+   T ++ +    L++ G  EG +RW N+LEL   A   RF + + L AL+ F++ETAL++ +D+  E                 GTE            R+ ++T+HA+KGLE+  VF++G+ EG FP  R  +D+E   EERRL YVG+TRAK RL LS    R      G       PSRF+A+IP+ ++
Sbjct:  494 GEVAGISSRARAALASVADVIARLRSRLTLIHLPELLDAVYSETGLRAH----LASEGV-EGEERWANLLELRGIAG--RFLELEPLDALDRFIEETALVADQDSLEE-----------------GTE------------RVTLITLHAAKGLEWPNVFISGLVEGLFPHSRALMDEEQMEEERRLCYVGITRAKRRLTLSYAIRR------GWGDGDGVPSRFLAEIPEELL 684          
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Match: A0A536S5M4_9CHLR (DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536S5M4_9CHLR)

HSP 1 Score: 109 bits (273), Expect = 2.130e-22
Identity = 79/236 (33.47%), Postives = 113/236 (47.88%), Query Frame = 1
Query:   43 AGDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPELFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDADTLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGPTVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRK-----DIDDEEERRLMYVGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIV 735
            AG++   +K Q++ L  FA L+ +LR  AA   +P L   + D T  + Y+       G  EG +RW NV EL   A    +S+      L  FL+E AL+S  D  ++++                             P   ++T+HA KGLEF  VF+TG+EEG FP  R      + + EEERRL YVG+TRAK R +L+    RT    T +      PSRF+ ++P   V
Sbjct:  450 AGEIASIAKRQAEALMGFARLVGRLRAAAARVDLPRLLDEVADATGYETYLKD-----GTEEGEERWANVQELRTLA--EEYSELPHEDQLPRFLEEIALVSDVDEYQDAK-----------------------------PAATLITMHAVKGLEFPIVFMTGMEEGVFPHARSIESGSEAELEEERRLCYVGITRAKDRCYLTWARRRTLFGHTNMN----PPSRFLRELPTQGV 645          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76722.15343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP3_ECTSI6.120e-5751.15DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z3L0_9STRA1.790e-2736.07DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A0F9I4L6_9ZZZZ3.730e-2436.11DNA helicase (Fragment) n=1 Tax=marine sediment me... [more]
UPI001AC16E276.000e-2436.02ATP-dependent DNA helicase PcrA n=1 Tax=Anaeroline... [more]
A0A3L7W6F8_9CHLR1.600e-2335.36DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A3L7W1W5_9CHLR3.820e-2333.57DNA helicase (Fragment) n=1 Tax=Chloroflexi bacter... [more]
A0A3L7VUJ6_9CHLR7.060e-2333.21DNA helicase n=1 Tax=Candidatus Aquidulcis sp. Tax... [more]
A0A535RN30_9CHLR8.750e-2333.81DNA helicase n=2 Tax=unclassified Chloroflexi TaxI... [more]
A0A3L7YP49_9CHLR1.720e-2235.62DNA helicase n=2 Tax=Chloroflexi TaxID=200795 RepI... [more]
A0A536S5M4_9CHLR2.130e-2233.47DNA helicase n=1 Tax=Chloroflexi bacterium TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76722contigH-elongata_contig76722:343..2529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue7.1e-52
Seed eggNOG ortholog2880.D7FLP3
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA helicase, UvrD-like, C-terminal
Ec32 orthologEc-17_000360.1
Exons3
Model size1142
Cds size1140
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76722.15343.1prot_H-elongata_contig76722.15343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76722 343..2528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.5615425-CDS-H-elongata_contig76722:342..5301622931171.5615425-CDS-H-elongata_contig76722:342..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 343..530 +
1691679727.6325421-CDS-H-elongata_contig76722:342..5301691679727.6325421-CDS-H-elongata_contig76722:342..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 343..530 +
1622931171.5723596-CDS-H-elongata_contig76722:1135..15431622931171.5723596-CDS-H-elongata_contig76722:1135..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 1136..1543 +
1691679727.6444588-CDS-H-elongata_contig76722:1135..15431691679727.6444588-CDS-H-elongata_contig76722:1135..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 1136..1543 +
1622931171.582528-CDS-H-elongata_contig76722:1984..25281622931171.582528-CDS-H-elongata_contig76722:1984..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 1985..2528 +
1691679727.6543021-CDS-H-elongata_contig76722:1984..25281691679727.6543021-CDS-H-elongata_contig76722:1984..2528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76722 1985..2528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76722.15343.1

>prot_H-elongata_contig76722.15343.1 ID=prot_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp
VSLRRARALGKALEAGDVKGPSKAQSKRLAMFAGLLCKLRVVAATQGMPE
LFRAIVDGTDMKEYVMGTLSTTGPSEGNDRWLNVLELERAATHHRFSDAD
TLSALETFLKETALMSSEDAERESREQEENGTGVAGEEGEGTEFSSGRGP
TVKLPRIQMMTVHASKGLEFDTVFLTGVEEGTFPMLRKDIDDEEERRLMY
VGMTRAKARLFLSCRDERTEITPTGLKRRGASPSRFIADIPKSIVRTIDR
RTATMSRELGNRHPQGAAADRVWRDLRSESPRRRRGGEWGEGGSDGEHGD
AERQYKPDAPSLDATTTRLFGDTDASPGSRTRRVAGGLPRRVGVGDACGG
TGVSSGRSSQGYGDGMRGPYGGDPRSHAAE
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mRNA from alignment at H-elongata_contig76722:343..2529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76722.15343.1 ID=mRNA_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-elongata_contig76722:343..2529+ (Himanthalia elongata Himel1 dioecious)
GTTTCCCTGCGCAGGGCGCGGGCGCTCGGTAAGGCGCTCGAAGCGGGGGA CGTAAAGGGCCCCTCGAAAGCGCAGTCCAAGAGGCTGGCGATGTTTGCCG GGTTGCTGTGCAAGCTTCGCGTGGTCGCGGCAACTCAGGGCATGCCGGAG TTATTTCGCGCGATCGTGGACGGGACCGACATGAAAGAGTGAGTGACGTC AAAGGAAGTGAGTGAGGTAGAAGGGAGTGGAGCTTGAAGCGATAGCGAGC GAGCTTAATTGAAGCCGTTCCTTCATTGGTGCATTGATTCATCTGTTTAT TTTATTGTTCGCTCATTGGTTTATTTATTCATTCATTCGTTGCTGTTTTC GTAACAGAGAAGTGGTGTGGCGAACAAGGTGCGTTTTTTTATTTGATCCT CTTTTGCACGTTGGTAAGACGAAGCTCATGGTGCGCGCTGAAGTTCTGTT CACTTGTCACCATCATGGCGCGGCTGAACTTGGATTGAATGGGATGGGAT GGAATCGGATTGGATTTGATTGGGTCGGGGAGGGTTTTGTTCCTTTTTAA ATATTTCTCCTTTTGAACTCATTCCAACCCTCCGAACATGCACGCCTTCT TAGCACCGTGAGAGGTGTAATCCAGAGGACCAACTATTGTCAGGTTCGAA TGTGTACACTACTACTATTTTTCTGCACGCCGCTGATCGACACGTAGTGC CCCCTTCCCCCGTCCCTATCCCCGAAGCCCCGAAAAACACGCCAACTTGT CTGTCTGTCACGACCTCCACCCTGATCCTTATGAACGCGAAAGGTACGTG ATGGGGACCCTGTCCACCACCGGCCCCTCGGAGGGGAACGACCGTTGGCT GAACGTCCTGGAGCTGGAGCGGGCGGCAACTCACCACCGGTTCTCGGACG CGGACACTCTAAGCGCTCTCGAGACATTCCTGAAGGAAACGGCACTCATG AGCTCCGAAGACGCGGAACGGGAGAGCCGAGAGCAAGAGGAGAACGGGAC TGGGGTGGCGGGTGAGGAGGGAGAAGGAACAGAATTTTCCTCTGGGAGGG GACCGACTGTTAAGCTGCCAAGGATCCAGATGATGACCGTCCACGCCTCG AAGGGGCTGGAGTTTGACACCGTGTTCCTGACGGGAGTTGAGGAAGGAAC GTTCCCGATGCTTCGAAAGGATATCGACGACGAAGAAGAGCGAAGGCTGA TGTAGGCCGTCTATTTTGTTTGTCTCCGCGGCCGCTTGATGTGGGAATTC TCTCATTGGTTCTCGGGCGGTTTTGTTTTTTAATGATAGGGCGCAAGGGG GGTGGGCGTTTCAGGAGCTGTTGATTTCTACGACCTGTCGTGTCGCTTGA GCAGGACAATTTACTTGCTTGCTTGTTACACACCCACGCGTGTGCGTCAT GTGAGGTGGTGGGGATGGTAAGCGACCTTTTTCCGTAAGCGTTCGATCTA TTTCTCTAATCTCTTTCGTTCCCACATGGAGCGCTCTTATTCGAGAGTAA GTATTTAAATATGCAGCATCCTCACTTAACCCCCGCGCGTGTTTCAAAGC TCCTTCCACGCCTCTCCCCCTCCTCCGTTCCGTTTTTACATTTTTCTGTC CTGCTGTCCCCCGTCCCCCGTCCCCTCCCCCACTCTCAAAAGGTATGTGG GAATGACGAGGGCGAAGGCGCGCCTATTCCTGAGCTGTCGAGACGAACGG ACCGAGATTACGCCCACCGGCCTTAAGCGACGAGGGGCCTCTCCCAGCCG GTTTATCGCCGACATCCCGAAGTCGATCGTGCGGACGATCGATAGGAGAA CCGCAACAATGAGCCGTGAGCTAGGCAACCGGCATCCCCAGGGAGCGGCG GCGGACAGAGTTTGGCGCGATCTTCGGAGCGAATCTCCGCGGCGTCGTCG CGGCGGGGAGTGGGGAGAAGGCGGGAGCGATGGTGAACACGGCGACGCCG AGAGGCAATATAAGCCCGACGCGCCCTCGCTCGATGCCACGACAACGCGG CTGTTCGGCGACACGGACGCTTCACCGGGCAGCCGCACCCGGAGGGTAGC GGGAGGACTCCCACGAAGAGTGGGCGTGGGCGACGCCTGCGGTGGGACCG GGGTCTCCAGCGGCCGTAGCAGTCAGGGGTACGGGGACGGAATGAGGGGG CCGTACGGAGGTGATCCCCGTTCTCATGCCGCCGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig76722:343..2529+

>mRNA_H-elongata_contig76722.15343.1 ID=mRNA_H-elongata_contig76722.15343.1|Name=mRNA_H-elongata_contig76722.15343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig76722:343..2529+ (Himanthalia elongata Himel1 dioecious)
GTTTCCCTGCGCAGGGCGCGGGCGCTCGGTAAGGCGCTCGAAGCGGGGGA
CGTAAAGGGCCCCTCGAAAGCGCAGTCCAAGAGGCTGGCGATGTTTGCCG
GGTTGCTGTGCAAGCTTCGCGTGGTCGCGGCAACTCAGGGCATGCCGGAG
TTATTTCGCGCGATCGTGGACGGGACCGACATGAAAGAGTTTCCCTGCGC
AGGGCGCGGGCGCTCGGTAAGGCGCTCGAAGCGGGGGACGTAAAGGGCCC
CTCGAAAGCGCAGTCCAAGAGGCTGGCGATGTTTGCCGGGTTGCTGTGCA
AGCTTCGCGTGGTCGCGGCAACTCAGGGCATGCCGGAGTTATTTCGCGCG
ATCGTGGACGGGACCGACATGAAAGAGTACGTGATGGGGACCCTGTCCAC
CACCGGCCCCTCGGAGGGGAACGACCGTTGGCTGAACGTCCTGGAGCTGG
AGCGGGCGGCAACTCACCACCGGTTCTCGGACGCGGACACTCTAAGCGCT
CTCGAGACATTCCTGAAGGAAACGGCACTCATGAGCTCCGAAGACGCGGA
ACGGGAGAGCCGAGAGCAAGAGGAGAACGGGACTGGGGTGGCGGGTGAGG
AGGGAGAAGGAACAGAATTTTCCTCTGGGAGGGGACCGACTGTTAAGCTG
CCAAGGATCCAGATGATGACCGTCCACGCCTCGAAGGGGCTGGAGTTTGA
CACCGTGTTCCTGACGGGAGTTGAGGAAGGAACGTTCCCGATGCTTCGAA
AGGATATCGACGACGAAGAAGAGCGAAGGCTGATGTACGTGATGGGGACC
CTGTCCACCACCGGCCCCTCGGAGGGGAACGACCGTTGGCTGAACGTCCT
GGAGCTGGAGCGGGCGGCAACTCACCACCGGTTCTCGGACGCGGACACTC
TAAGCGCTCTCGAGACATTCCTGAAGGAAACGGCACTCATGAGCTCCGAA
GACGCGGAACGGGAGAGCCGAGAGCAAGAGGAGAACGGGACTGGGGTGGC
GGGTGAGGAGGGAGAAGGAACAGAATTTTCCTCTGGGAGGGGACCGACTG
TTAAGCTGCCAAGGATCCAGATGATGACCGTCCACGCCTCGAAGGGGCTG
GAGTTTGACACCGTGTTCCTGACGGGAGTTGAGGAAGGAACGTTCCCGAT
GCTTCGAAAGGATATCGACGACGAAGAAGAGCGAAGGCTGATGTATGTGG
GAATGACGAGGGCGAAGGCGCGCCTATTCCTGAGCTGTCGAGACGAACGG
ACCGAGATTACGCCCACCGGCCTTAAGCGACGAGGGGCCTCTCCCAGCCG
GTTTATCGCCGACATCCCGAAGTCGATCGTGCGGACGATCGATAGGAGAA
CCGCAACAATGAGCCGTGAGCTAGGCAACCGGCATCCCCAGGGAGCGGCG
GCGGACAGAGTTTGGCGCGATCTTCGGAGCGAATCTCCGCGGCGTCGTCG
CGGCGGGGAGTGGGGAGAAGGCGGGAGCGATGGTGAACACGGCGACGCCG
AGAGGCAATATAAGCCCGACGCGCCCTCGCTCGATGCCACGACAACGCGG
CTGTTCGGCGACACGGACGCTTCACCGGGCAGCCGCACCCGGAGGGTAGC
GGGAGGACTCCCACGAAGAGTGGGCGTGGGCGACGCCTGCGGTGGGACCG
GGGTCTCCAGCGGCCGTAGCAGTCAGGGGTACGGGGACGGAATGAGGGGG
CCGTACGGAGGTGATCCCCGTTCTCATGCCGCCGAAGTATGTGGGAATGA
CGAGGGCGAAGGCGCGCCTATTCCTGAGCTGTCGAGACGAACGGACCGAG
ATTACGCCCACCGGCCTTAAGCGACGAGGGGCCTCTCCCAGCCGGTTTAT
CGCCGACATCCCGAAGTCGATCGTGCGGACGATCGATAGGAGAACCGCAA
CAATGAGCCGTGAGCTAGGCAACCGGCATCCCCAGGGAGCGGCGGCGGAC
AGAGTTTGGCGCGATCTTCGGAGCGAATCTCCGCGGCGTCGTCGCGGCGG
GGAGTGGGGAGAAGGCGGGAGCGATGGTGAACACGGCGACGCCGAGAGGC
AATATAAGCCCGACGCGCCCTCGCTCGATGCCACGACAACGCGGCTGTTC
GGCGACACGGACGCTTCACCGGGCAGCCGCACCCGGAGGGTAGCGGGAGG
ACTCCCACGAAGAGTGGGCGTGGGCGACGCCTGCGGTGGGACCGGGGTCT
CCAGCGGCCGTAGCAGTCAGGGGTACGGGGACGGAATGAGGGGGCCGTAC
GGAGGTGATCCCCGTTCTCATGCCGCCGAA
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